genome.fa.s2.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  122  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37439320--37439486	40	4.2	40	82	2	185	24	26	22	26	2.00
37456753--37456935	79	2.3	80	84	7	230	26	27	21	24	1.99
37456732--37456935	40	5.1	40	81	8	238	25	27	21	24	1.99
37460504--37460635	29	4.6	29	91	0	201	25	32	15	26	1.95
37468552--37468683	29	4.6	29	91	0	201	25	32	15	26	1.95
37476164--37476346	79	2.3	81	85	7	241	25	27	22	24	2.00
37476143--37476346	40	5.1	40	83	8	247	25	27	22	24	1.99
37488690--37488778	22	4.1	22	73	2	72	14	24	24	35	1.93
37493433--37493472	21	1.9	21	94	0	71	22	27	10	40	1.86
37496661--37496686	2	13.0	2	100	0	52	50	0	0	50	1.00
37497137--37497367	24	9.6	24	97	0	417	21	18	25	35	1.96
37504479--37504709	24	9.6	24	95	0	381	21	18	25	35	1.96
37506701--37506770	27	2.5	28	90	2	106	28	14	28	28	1.95
37514702--37514771	27	2.5	28	90	2	106	28	14	28	28	1.95
37521158--37521346	40	4.8	40	87	2	258	25	27	22	24	2.00
37522248--37522312	21	3.2	21	60	8	53	36	27	1	33	1.67
37522250--37522337	40	2.2	40	100	0	176	35	27	2	35	1.70
37523063--37523267	47	4.3	47	88	3	268	29	30	7	32	1.86
37523113--37523240	22	5.3	25	62	22	67	32	30	5	32	1.80
37530706--37530888	40	4.6	40	90	3	271	21	22	28	26	1.99
37530706--37530922	80	2.7	80	86	6	273	22	21	29	26	1.99
37539108--37539177	27	2.6	27	77	4	70	37	22	22	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37542192--37542217	2	13.0	2	100	0	52	50	0	0	50	1.00
37542750--37542908	43	3.7	45	77	7	132	32	24	15	27	1.96
37550423--37550677	47	5.5	47	90	2	399	35	10	27	25	1.89
37550423--37550677	138	1.8	140	89	2	406	35	10	27	25	1.89
37550423--37550677	91	2.8	92	93	1	422	35	10	27	25	1.89
37550676--37550841	46	3.6	46	94	0	269	34	9	31	24	1.87
37552321--37552455	40	3.4	40	95	0	243	26	21	25	26	1.99
37552544--37552614	28	2.5	28	95	0	124	19	19	28	32	1.97
37558082--37558184	29	3.6	29	90	0	152	26	15	33	25	1.95
37559648--37559685	20	1.9	20	88	0	58	34	2	10	52	1.50
37561312--37561380	28	2.5	28	95	2	122	43	27	10	18	1.82
37567651--37567688	20	1.9	20	88	0	58	34	2	10	52	1.50
37569314--37569381	27	2.5	28	92	4	113	42	27	10	19	1.83
37570598--37570976	47	8.1	47	93	0	589	33	11	29	26	1.91
37572728--37572778	16	3.1	16	72	25	52	19	13	31	35	1.91
37577664--37577776	44	2.6	43	78	17	126	31	29	15	23	1.95
37580538--37580703	42	3.9	42	78	4	156	30	24	15	29	1.95
37584433--37584535	29	3.6	27	78	5	89	28	32	16	23	1.96
37585757--37585793	19	2.1	18	85	14	51	8	16	0	75	1.02
37597007--37597170	40	4.1	40	75	6	127	27	27	22	22	1.99
37598900--37599075	46	3.8	46	79	12	216	20	21	29	28	1.98
37598897--37599068	93	1.8	93	96	0	317	20	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37607069--37607299	49	4.7	50	78	3	252	25	18	27	28	1.98
37607077--37607299	100	2.2	100	85	3	299	25	18	26	28	1.98
37609675--37609850	46	3.8	46	79	12	216	20	21	29	28	1.98
37609672--37609843	93	1.8	93	96	0	317	20	21	29	27	1.98
37617181--37617354	46	3.8	46	78	13	205	20	20	29	28	1.98
37625308--37625414	27	3.9	27	82	9	128	37	21	24	16	1.94
37626829--37626879	24	2.1	24	88	0	75	23	37	1	37	1.66
37631824--37631894	27	2.7	26	85	12	92	30	26	12	29	1.93
37637035--37637244	40	5.2	40	88	2	305	21	28	24	25	1.99
37645170--37645379	40	5.2	40	88	2	305	21	28	24	25	1.99
37647468--37647537	30	2.3	30	80	5	77	24	18	5	51	1.68
37648487--37648551	34	1.9	34	87	0	94	38	10	12	38	1.78
37654593--37654816	49	4.5	49	86	3	288	29	28	16	25	1.97
37654580--37654834	98	2.6	98	82	4	318	29	27	17	25	1.97
37656957--37657018	15	4.2	14	78	15	63	58	16	16	9	1.63
37656955--37657013	29	2.0	29	87	9	84	57	16	16	8	1.63
37659989--37660175	49	3.8	48	87	2	230	28	26	18	25	1.98
37659989--37660175	48	3.8	48	87	2	221	28	26	18	25	1.98
37659989--37660175	97	1.9	97	85	2	257	28	26	18	25	1.98
37662312--37662370	15	4.0	15	78	12	68	57	18	15	8	1.63
37665353--37665528	50	3.5	49	80	9	167	29	27	17	25	1.97
37668231--37668381	43	3.5	44	82	4	182	25	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37671875--37672015	47	3.0	47	98	0	273	8	29	2	60	1.38
37673231--37673361	46	2.9	46	77	4	140	28	17	20	33	1.95
37680245--37680424	40	4.5	40	79	6	152	25	23	27	23	2.00
37680245--37680426	79	2.3	81	81	7	203	25	23	27	24	2.00
37683320--37683366	22	2.1	22	84	7	60	31	27	27	12	1.93
37683616--37683685	27	2.6	27	88	4	97	32	17	14	35	1.90
37683909--37683951	17	2.4	18	85	14	54	23	44	23	9	1.82
37683914--37683951	19	2.0	19	90	10	60	23	44	21	10	1.83
37686259--37686301	20	2.2	20	100	0	86	27	34	27	9	1.88
37697192--37697241	21	2.4	21	86	6	66	6	16	0	78	0.95
37699525--37699639	44	2.7	43	76	14	119	29	26	17	26	1.97
37702889--37702937	17	2.8	18	74	22	50	24	18	22	34	1.96
37703760--37703926	40	4.2	40	79	6	169	25	21	27	25	1.99
37710897--37710945	17	2.8	18	74	22	50	24	18	22	34	1.96
37718567--37718726	29	5.5	29	82	4	180	26	16	31	25	1.97
37728077--37728566	27	18.2	27	77	10	206	36	20	9	33	1.84
37728077--37728261	53	3.5	52	79	10	212	38	19	9	31	1.84
37728071--37728300	106	2.1	108	81	7	281	37	19	9	33	1.84
37728118--37728498	81	4.7	81	77	2	257	36	21	8	33	1.84
37728359--37728541	81	2.2	80	83	7	235	39	21	7	31	1.81
37728373--37728525	81	1.9	82	89	5	240	41	22	7	28	1.80
37728077--37728566	54	9.1	53	77	6	292	36	20	9	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37728571--37728838	27	10.0	27	89	0	376	36	19	20	23	1.95
37729043--37729137	25	3.8	25	95	0	163	26	26	22	25	2.00
37731029--37731053	9	2.8	9	100	0	50	12	0	20	68	1.21
37732001--37732198	46	4.2	47	77	14	155	26	18	31	23	1.97
37735799--37735832	2	17.0	2	93	0	59	50	2	0	47	1.16
37737802--37737930	46	2.8	46	95	0	222	29	29	21	19	1.98
37737810--37737949	46	3.0	45	88	4	140	28	29	21	20	1.98
37745330--37745417	46	1.9	46	88	0	122	27	30	22	19	1.98
37754625--37754697	36	2.0	36	94	0	128	43	8	19	28	1.79
37758293--37758460	40	4.2	40	84	5	198	26	27	22	23	1.99
37758293--37758460	80	2.1	80	86	4	232	26	27	22	23	1.99
37769562--37769597	18	2.0	18	94	0	63	16	2	16	63	1.42
37771629--37771659	16	1.9	16	100	0	62	32	22	19	25	1.97
37772550--37772640	19	4.9	19	89	8	152	38	10	14	36	1.81
37772550--37772647	36	2.7	38	84	12	143	38	10	15	35	1.81
37772550--37772663	19	5.8	22	85	10	87	37	9	14	37	1.80
37772929--37772968	19	2.1	19	86	9	55	32	2	0	65	1.06
37778326--37778493	40	4.2	40	82	1	185	24	26	22	26	2.00
37784982--37785015	2	17.0	2	93	0	59	50	2	0	47	1.16
37785649--37785747	29	3.5	28	83	5	119	29	16	26	28	1.97
37788420--37788453	11	2.8	12	91	8	52	23	11	2	61	1.43
37790001--37790051	26	2.0	26	100	0	102	21	23	11	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37791771--37791816	21	2.3	20	85	7	58	32	0	17	50	1.47
37795952--37796036	17	5.1	17	71	16	70	45	10	18	24	1.81
37795953--37796036	33	2.5	33	94	0	141	45	10	19	25	1.82
37795952--37796038	16	5.3	16	76	4	84	44	11	18	25	1.83
37801052--37801283	40	5.8	39	79	7	232	24	23	28	24	2.00
37801052--37801312	80	3.3	80	82	4	287	25	22	27	24	2.00
37804380--37804568	58	3.3	58	77	3	175	23	32	16	26	1.96
37804380--37804569	29	6.6	29	83	2	159	24	32	16	26	1.96
37811585--37811773	58	3.3	58	77	3	175	23	32	16	26	1.96
37811585--37811774	29	6.6	29	83	2	159	24	32	16	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318