genome.fa.s2.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  133  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40707602--40707709	40	2.7	38	85	8	128	21	29	25	23	1.99
40709657--40709692	17	2.2	17	90	9	58	5	25	0	69	1.10
40710683--40710716	15	2.3	15	90	10	52	29	0	26	44	1.55
40711649--40711747	50	2.0	50	89	0	153	41	7	13	38	1.71
40720296--40720408	28	4.1	28	83	10	144	37	21	23	18	1.94
40721638--40721692	18	3.2	17	75	10	58	60	0	32	7	1.24
40728243--40728332	28	3.3	27	84	7	119	36	22	24	16	1.94
40728592--40728630	18	2.2	18	95	0	69	12	38	17	30	1.88
40729582--40729632	18	2.8	18	79	8	68	60	0	35	3	1.15
40729582--40729638	18	3.2	18	78	7	62	63	0	33	3	1.12
40735866--40736083	40	5.5	40	86	4	266	26	28	22	22	1.99
40743311--40743422	43	2.6	43	85	2	145	33	24	16	26	1.96
40745708--40745752	19	2.4	19	92	0	72	35	24	15	24	1.94
40745716--40745753	19	2.0	19	100	0	76	36	26	15	21	1.93
40747100--40747159	27	2.3	26	85	2	75	36	20	21	21	1.95
40751769--40751821	26	2.0	26	96	0	97	37	18	16	26	1.93
40754382--40754430	26	1.9	25	83	4	62	34	22	24	18	1.96
40759506--40759555	25	2.0	25	100	0	100	28	28	24	20	1.99
40760894--40761064	93	1.8	93	94	2	308	28	29	21	21	1.98
40760889--40761061	46	3.7	47	80	13	223	29	28	20	21	1.98
40761483--40761542	30	2.0	30	90	0	93	30	25	8	36	1.85
40768439--40768613	46	3.8	49	78	15	183	28	28	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40769032--40769091	30	2.0	30	90	0	93	30	25	8	36	1.85
40776375--40776523	67	2.2	67	81	9	171	32	17	28	21	1.96
40776399--40776581	63	2.8	63	77	11	183	30	17	29	22	1.97
40780312--40780555	27	9.0	27	85	0	308	31	20	22	25	1.98
40780698--40780755	27	2.1	27	80	0	62	24	17	20	37	1.93
40780945--40781030	33	2.8	30	78	15	79	24	24	27	23	2.00
40784587--40784803	27	8.1	27	83	3	233	34	18	21	25	1.96
40784593--40784803	78	2.6	80	84	5	293	34	18	21	26	1.96
40784943--40785024	27	3.0	26	80	7	92	21	21	19	36	1.95
40786715--40786833	39	3.1	39	86	0	166	28	19	23	28	1.98
40787911--40788320	203	2.0	203	97	0	766	31	15	18	34	1.92
40795042--40795197	77	2.0	77	90	2	242	27	21	25	26	1.99
40795047--40795216	77	2.2	76	84	9	227	26	21	25	26	1.99
40795042--40795197	38	4.1	39	89	3	235	27	21	25	26	1.99
40801281--40801322	21	2.0	21	85	0	57	21	16	42	19	1.89
40806358--40806400	16	2.7	16	92	0	68	48	16	23	11	1.78
40806615--40806715	28	3.6	28	85	4	114	28	16	28	25	1.97
40813943--40813985	16	2.7	16	96	0	77	48	20	23	6	1.73
40813943--40813985	8	5.4	8	82	0	59	48	20	23	6	1.73
40814199--40814274	29	2.7	27	84	6	89	28	14	25	31	1.95
40814199--40814280	28	2.9	28	78	5	85	28	15	24	31	1.96
40816326--40816426	28	3.5	29	86	6	125	29	27	13	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40827699--40827882	40	4.6	39	75	6	138	26	23	27	22	2.00
40827739--40827927	80	2.4	81	77	4	186	23	24	29	22	1.99
40831484--40831512	2	14.5	2	100	0	58	51	0	0	48	1.00
40832909--40833089	48	3.9	47	76	10	156	27	17	23	31	1.97
40848584--40848713	46	2.8	47	84	10	144	30	30	19	20	1.97
40866034--40866163	46	2.8	47	84	10	144	30	30	19	20	1.97
40876968--40877213	49	5.0	49	83	3	321	29	26	18	25	1.98
40877861--40877920	30	2.0	30	83	6	77	28	28	8	35	1.86
40879699--40879809	27	4.1	27	87	5	145	38	22	23	15	1.92
40881672--40881889	40	5.5	40	87	4	275	25	28	22	22	1.99
40890850--40890994	40	3.6	40	85	4	193	25	24	26	23	2.00
40893016--40893233	40	5.5	40	87	4	275	25	28	22	22	1.99
40895916--40895969	24	2.2	24	90	0	81	20	44	3	31	1.69
40902237--40902347	27	4.1	27	87	5	145	38	22	23	15	1.92
40903776--40903852	24	3.2	24	90	0	118	20	41	3	33	1.71
40905891--40905952	21	3.0	20	79	11	63	3	14	4	77	1.06
40911362--40911462	28	3.5	28	86	6	114	29	26	13	29	1.94
40913972--40914070	28	3.5	28	76	15	123	28	15	28	28	1.96
40913972--40914088	56	2.1	56	95	0	207	26	15	29	28	1.96
40914000--40914088	28	3.2	27	70	17	74	24	14	32	28	1.95
40916948--40917119	40	4.2	40	79	10	161	26	28	21	23	1.99
40924939--40925142	40	5.2	40	90	2	297	27	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40933112--40933250	40	3.5	40	83	2	120	27	23	27	22	1.99
40933148--40933276	40	3.2	39	84	6	152	24	22	27	25	2.00
40941110--40941276	40	4.2	40	79	6	169	26	22	26	24	2.00
40942852--40943000	48	3.1	48	79	0	163	30	26	17	25	1.97
40948633--40948721	30	3.0	31	81	4	103	29	23	16	30	1.97
40951317--40951373	5	11.0	5	75	20	55	75	1	19	3	1.04
40951442--40951466	12	2.1	12	100	0	50	76	0	16	8	1.02
40951433--40951486	18	3.0	18	77	0	54	64	1	20	12	1.36
40951459--40951503	24	2.0	22	82	8	54	53	0	31	15	1.43
40953245--40953342	30	3.3	30	72	4	90	27	26	16	29	1.97
40954970--40955003	12	2.8	12	100	0	68	70	5	8	14	1.31
40955921--40955977	16	3.7	15	79	13	62	77	3	15	3	1.05
40955910--40955975	21	3.1	20	79	14	62	77	4	15	3	1.06
40955921--40955959	15	2.6	14	84	15	51	79	2	17	0	0.84
40956025--40956055	12	2.6	12	94	0	53	45	9	16	29	1.79
40956058--40956082	12	2.1	12	100	0	50	76	0	16	8	1.02
40956052--40956107	18	3.1	18	76	5	51	69	3	19	7	1.27
40956058--40956139	30	2.7	31	81	5	105	64	1	21	12	1.33
40958341--40958438	30	3.3	30	72	4	90	27	26	16	29	1.97
40960330--40960402	26	2.8	26	85	0	110	26	24	24	24	2.00
40960624--40960688	32	2.0	32	90	0	103	36	16	23	23	1.94
40963484--40963541	29	2.0	29	100	0	116	34	13	6	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40963973--40964102	28	4.7	27	83	11	129	28	26	16	29	1.97
40963939--40964102	84	1.9	85	93	2	285	29	28	15	27	1.96
40977628--40977758	71	1.9	70	82	7	169	21	28	16	33	1.95
40979549--40979717	40	4.2	40	83	1	187	24	26	22	26	2.00
40987532--40987699	40	4.2	40	82	1	185	24	26	22	26	2.00
40990346--40990390	23	2.0	23	86	0	63	13	24	35	26	1.92
40995998--40996047	21	2.4	22	83	10	68	26	30	8	36	1.85
40996019--40996199	41	4.4	40	82	1	209	23	27	13	35	1.92
40996019--40996197	82	2.2	81	88	1	259	23	27	13	35	1.92
40996182--40996217	18	2.0	18	100	0	72	33	22	16	27	1.95
40996142--40996256	59	2.0	58	87	5	169	23	27	16	32	1.96
40996066--40996321	140	1.8	141	84	2	354	22	27	15	34	1.94
40996207--40996351	41	3.5	41	84	0	182	23	28	15	33	1.95
40996224--40996290	20	3.3	20	62	4	53	16	29	19	34	1.94
40996101--40996306	100	2.1	99	84	2	272	22	27	15	33	1.95
40999367--40999513	64	2.2	65	83	7	170	32	18	27	21	1.96
41002340--41002391	27	1.9	27	88	0	77	32	15	15	36	1.89
41005848--41006001	56	2.8	53	79	12	134	31	35	15	18	1.92
41011625--41011673	25	2.0	25	87	0	71	32	22	18	26	1.97
41011806--41011851	25	1.9	24	82	8	58	26	21	23	28	1.99
41028020--41028078	27	2.2	27	85	8	77	32	11	16	38	1.86
41028030--41028143	27	4.2	27	86	2	149	30	8	20	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41028030--41028210	54	3.4	53	77	4	166	30	7	20	40	1.81
41028150--41028237	27	3.3	26	82	7	104	34	5	22	37	1.78
41028162--41028321	54	3.0	54	84	0	149	40	6	21	31	1.79
41028189--41028322	27	5.0	27	92	0	187	40	7	22	29	1.81
41028163--41028321	81	2.0	81	82	0	192	39	6	21	32	1.80
41028189--41028344	54	2.9	54	86	0	204	39	7	21	30	1.82
41028189--41028344	27	5.8	27	91	0	168	39	7	21	30	1.82
41028189--41028337	81	1.8	81	82	0	190	40	8	20	30	1.81
41030547--41030640	25	3.8	25	92	1	154	26	22	25	25	2.00
41030534--41030640	50	2.2	50	85	6	139	26	22	23	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318