genome.fa.s2.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  175  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54346498--54346552	22	2.5	22	96	0	101	23	16	30	29	1.96
54348104--54348159	15	3.7	15	86	9	87	60	10	16	12	1.58
54350907--54351014	39	2.7	40	84	2	128	26	24	28	20	1.99
54350864--54351030	40	4.2	40	75	7	160	24	21	28	25	1.99
54354298--54354473	46	3.8	46	79	10	214	29	28	19	21	1.98
54354305--54354476	93	1.8	93	94	0	308	28	29	20	22	1.98
54357049--54357178	40	3.2	40	82	4	165	23	24	28	23	2.00
54359740--54359924	47	3.9	46	79	12	187	25	28	17	27	1.98
54362761--54362865	20	5.2	20	70	12	81	42	21	22	12	1.86
54366612--54366655	23	1.9	23	95	0	79	54	11	11	22	1.68
54373169--54373276	54	2.0	54	98	0	207	34	9	25	31	1.87
54373190--54373275	27	3.2	27	63	12	68	34	10	24	30	1.89
54377880--54378031	40	3.8	40	81	6	173	27	22	26	23	1.99
54377880--54378030	80	1.9	80	85	0	212	27	21	26	23	1.99
54377880--54378087	40	5.2	40	80	2	166	27	23	26	22	1.99
54377884--54378066	80	2.3	80	80	0	204	28	23	26	21	1.99
54380378--54380468	30	3.0	30	86	1	110	29	16	18	35	1.93
54388765--54388834	28	2.5	28	90	4	106	32	27	12	27	1.93
54391685--54391766	29	2.9	29	94	1	148	18	17	29	35	1.93
54395945--54395972	5	5.6	5	100	0	56	35	0	0	64	0.94
54398087--54398208	40	3.0	40	91	0	190	11	29	18	40	1.86
54398087--54398192	20	5.3	20	74	8	99	11	29	18	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54398109--54398208	20	5.0	20	75	9	105	11	30	20	39	1.87
54398541--54398568	13	2.2	13	100	0	56	21	0	14	64	1.29
54407748--54407860	42	2.8	40	86	5	154	18	29	17	34	1.94
54407754--54407879	42	3.1	40	84	5	135	19	30	16	33	1.94
54417339--54417396	22	2.7	22	78	5	66	17	32	25	24	1.96
54418639--54418672	12	2.8	12	90	0	50	41	14	26	17	1.88
54421943--54421986	19	2.4	19	85	7	56	50	0	9	40	1.34
54423759--54423827	28	2.5	28	95	2	122	43	27	10	18	1.82
54430146--54430296	40	3.8	39	84	2	151	23	27	22	26	2.00
54430146--54430296	80	1.9	79	83	6	198	23	27	22	26	2.00
54431115--54431160	17	2.5	19	74	22	53	34	23	17	23	1.96
54438121--54438287	40	4.2	40	82	2	185	24	26	22	26	2.00
54439106--54439151	17	2.5	19	74	22	53	34	23	17	23	1.96
54441403--54441431	10	2.9	10	100	0	58	37	0	10	51	1.36
54448609--54448678	27	2.5	28	95	2	124	28	14	27	30	1.95
54448609--54448690	27	3.0	27	85	8	78	29	15	24	30	1.96
54456636--54456705	27	2.5	28	95	2	124	28	14	27	30	1.95
54456636--54456717	27	3.0	27	85	8	78	29	15	24	30	1.96
54468877--54468905	14	2.1	14	100	0	58	34	0	13	51	1.42
54468894--54468934	20	2.0	20	90	0	64	36	4	7	51	1.51
54470045--54470133	21	4.1	21	84	5	90	12	23	10	53	1.68
54470065--54470133	21	3.3	21	87	2	95	11	24	8	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54476229--54476276	25	1.9	25	91	0	78	35	25	14	25	1.94
54476315--54476371	9	5.9	9	73	15	51	35	8	21	35	1.84
54476313--54476383	20	3.5	20	94	0	124	35	11	21	32	1.89
54476324--54476378	11	5.4	11	70	16	55	36	12	20	30	1.90
54476430--54476572	23	6.1	23	88	3	214	28	22	21	27	1.99
54476428--54476574	47	3.1	47	94	0	249	29	22	21	26	1.99
54477364--54477459	47	2.0	47	100	0	192	23	12	34	29	1.92
54484278--54484314	19	1.9	20	88	5	58	51	2	13	32	1.55
54486071--54486124	25	2.2	25	96	0	99	20	25	38	14	1.91
54491955--54492103	40	3.7	40	89	5	230	26	27	22	24	2.00
54499060--54499223	40	4.1	40	82	6	188	25	20	28	26	1.99
54499060--54499237	80	2.2	80	83	4	209	25	20	27	25	1.99
54504964--54505144	39	4.6	41	84	5	221	23	22	27	27	1.99
54504960--54505162	79	2.6	79	84	3	248	25	21	26	26	2.00
54506613--54506761	40	3.7	40	86	3	219	26	26	21	25	1.99
54510545--54510575	2	15.5	2	93	0	53	54	0	0	45	0.99
54531912--54532030	58	2.1	58	90	0	184	34	11	13	40	1.81
54532014--54532047	17	2.0	17	94	0	59	26	23	8	41	1.83
54531958--54532103	73	2.0	75	90	2	233	33	11	11	43	1.77
54532035--54532162	58	2.2	57	88	2	195	32	8	13	45	1.74
54532190--54532443	69	3.7	69	77	10	243	19	21	22	35	1.96
54544764--54544950	40	4.7	39	88	4	223	25	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54544764--54544963	80	2.5	80	81	3	249	24	21	28	26	1.99
54552909--54553115	40	5.2	39	82	6	220	25	21	28	25	1.99
54561471--54561507	19	1.9	19	94	0	65	56	13	8	21	1.63
54564424--54564463	10	3.9	10	87	6	62	25	0	10	65	1.24
54567715--54567754	5	7.8	5	84	15	55	80	0	2	17	0.83
54567711--54567754	16	2.8	16	86	3	63	79	0	2	18	0.83
54573681--54573711	14	2.1	15	94	5	55	51	12	6	29	1.65
54574779--54574815	16	2.3	16	100	0	74	35	27	18	18	1.95
54575699--54575735	19	1.9	19	94	0	65	56	13	8	21	1.63
54577367--54577421	21	2.8	19	81	10	65	65	5	1	27	1.25
54577625--54577670	18	2.7	18	86	6	60	69	13	2	15	1.28
54581758--54581794	15	2.3	17	86	9	51	78	0	5	16	0.93
54586324--54586373	19	2.6	19	81	9	57	40	8	28	24	1.83
54589129--54589293	40	4.1	39	79	6	154	27	27	20	24	1.99
54598156--54598221	25	2.6	25	78	4	80	34	22	21	21	1.96
54600052--54600111	27	2.2	27	84	0	75	16	20	20	43	1.88
54605969--54606158	29	6.6	29	94	0	317	26	14	32	26	1.95
54607704--54607771	31	2.2	32	94	2	120	50	13	16	20	1.78
54608174--54608342	27	6.3	27	86	2	241	24	20	19	34	1.96
54608178--54608369	54	3.6	54	86	2	253	26	19	18	35	1.95
54608324--54608493	27	6.3	27	82	0	142	31	7	23	37	1.82
54608189--54608396	81	2.6	80	82	6	249	26	17	20	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54608324--54608971	54	12.0	54	78	4	204	32	8	22	36	1.84
54608326--54608964	81	7.9	81	76	7	393	32	8	22	36	1.84
54608445--54608614	27	6.3	27	90	0	268	37	7	24	30	1.83
54608626--54608964	27	12.6	27	82	6	366	30	8	21	39	1.83
54608605--54608964	135	2.7	133	89	6	553	30	8	21	39	1.84
54609810--54609862	25	2.2	24	86	3	70	16	20	20	41	1.90
54609976--54610028	25	2.1	25	89	0	79	24	20	18	35	1.95
54612995--54613098	52	2.0	52	98	0	199	35	20	25	19	1.95
54614479--54614647	43	3.9	43	72	9	155	24	17	27	30	1.97
54619589--54619623	14	2.6	14	90	4	54	34	25	11	28	1.91
54623196--54623226	16	1.9	16	93	0	53	35	22	0	41	1.54
54623193--54623232	20	2.0	20	85	0	53	37	22	0	40	1.54
54625420--54625537	46	2.6	46	83	6	159	23	29	17	28	1.97
54625860--54625942	30	2.8	30	90	0	130	31	26	9	32	1.88
54627239--54627263	11	2.3	11	100	0	50	28	0	0	72	0.86
54629611--54629657	19	2.6	18	81	15	53	63	12	2	21	1.39
54633297--54633329	16	1.9	18	88	11	52	51	18	12	18	1.76
54633874--54633977	43	2.4	43	95	0	190	22	28	22	26	1.99
54640421--54640510	44	2.0	44	100	0	180	41	16	17	24	1.90
54641903--54642110	48	4.3	47	80	6	204	26	25	19	27	1.99
54641903--54642127	96	2.3	96	81	5	267	27	25	19	28	1.99
54645357--54645627	47	5.7	47	71	13	196	27	16	30	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54647383--54647413	13	2.4	13	94	0	53	16	25	25	32	1.96
54651803--54652014	86	2.4	87	81	2	228	36	16	21	25	1.94
54653296--54653337	15	2.8	15	92	0	66	57	4	0	38	1.20
54658446--54658665	48	4.6	47	78	6	212	23	30	17	28	1.97
54658446--54658665	96	2.3	95	83	8	252	23	30	17	28	1.97
54665162--54665305	37	3.9	37	92	1	227	26	29	18	25	1.98
54665162--54665305	73	2.0	74	90	1	227	26	29	18	25	1.98
54665451--54665580	46	2.8	46	79	8	131	25	30	10	33	1.89
54665515--54665896	47	8.0	47	90	2	566	26	31	12	30	1.92
54665515--54665896	192	2.0	188	91	2	620	26	31	12	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318