genome.fa.s2.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  219  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68896336--68896472	68	2.0	68	97	0	256	45	13	18	23	1.84
68896607--68896678	3	25.0	3	73	10	53	2	25	2	69	1.15
68897651--68897686	2	18.0	2	100	0	72	50	0	0	50	1.00
68897703--68897736	18	1.9	17	88	5	50	50	8	0	41	1.34
68899357--68899407	18	2.8	18	74	14	50	66	5	3	23	1.30
68901813--68902403	176	3.4	175	86	3	742	27	25	16	31	1.96
68902253--68902334	43	1.9	43	84	0	110	29	25	10	34	1.90
68904065--68904134	27	2.5	28	95	2	124	28	14	27	30	1.95
68904065--68904146	27	3.0	27	85	8	78	29	15	24	30	1.96
68912058--68912127	27	2.5	28	95	2	124	28	14	27	30	1.95
68912058--68912139	27	3.0	27	85	8	78	29	15	24	30	1.96
68915553--68915698	37	3.9	37	97	0	256	26	31	19	23	1.98
68915844--68916028	48	3.8	48	89	4	282	31	26	5	36	1.81
68915844--68916027	98	1.9	97	89	4	291	30	26	5	36	1.81
68915998--68916191	47	4.1	47	89	0	271	27	28	10	33	1.90
68920142--68920366	40	5.6	40	92	0	360	25	28	22	24	1.99
68921640--68921784	37	3.9	37	92	0	236	26	30	19	24	1.98
68921930--68922114	48	3.8	48	87	4	264	30	25	7	36	1.83
68921909--68922119	98	2.1	99	83	7	277	30	27	7	34	1.85
68922085--68922189	47	2.2	47	86	0	138	26	30	13	29	1.94
68922154--68922223	34	2.1	34	94	0	122	30	30	11	28	1.92
68922106--68922264	81	2.0	81	87	0	228	28	30	10	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68925054--68925292	50	4.7	51	93	2	410	13	20	19	46	1.83
68925038--68925292	103	2.5	103	92	5	412	13	18	18	49	1.80
68936436--68936486	18	2.8	18	74	14	50	66	5	3	23	1.30
68939346--68939388	20	2.2	20	100	0	86	20	6	30	41	1.79
68940399--68940461	31	2.0	31	100	0	126	31	19	20	28	1.97
68941106--68941161	20	2.9	20	87	10	73	26	3	1	67	1.16
68942092--68942134	22	2.0	22	95	0	77	30	6	4	58	1.45
68942477--68942551	23	3.2	23	75	18	66	28	9	9	53	1.64
68944337--68944763	110	3.9	109	79	3	403	25	16	26	31	1.96
68945001--68945039	13	2.9	13	92	3	60	38	10	17	33	1.84
68945996--68946049	21	2.6	21	93	0	90	31	25	20	22	1.98
68948139--68948214	39	1.9	39	91	0	125	26	3	21	48	1.67
68949873--68949906	15	2.3	15	94	0	59	47	11	17	23	1.81
68950068--68950124	29	2.0	29	85	0	78	24	19	22	33	1.97
68950072--68950140	29	2.4	29	80	4	77	23	18	23	34	1.96
68951966--68952013	18	2.5	19	76	6	53	52	12	2	33	1.51
68954213--68954254	21	2.0	21	95	0	75	28	7	19	45	1.76
68955205--68955248	20	2.2	20	84	8	54	40	6	0	52	1.28
68955660--68955693	5	6.8	5	93	0	59	23	0	35	41	1.55
68962351--68962462	48	2.3	47	83	11	138	36	8	4	50	1.54
68962351--68962485	48	2.8	45	80	14	137	32	8	5	52	1.57
68963447--68963478	14	2.3	14	94	0	55	25	0	15	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68964061--68964095	18	1.9	18	94	0	61	28	28	2	40	1.71
68967591--68967972	126	3.0	126	92	1	649	26	21	19	33	1.97
68980431--68980795	48	7.6	48	77	4	351	24	28	18	27	1.98
68980431--68980806	96	3.9	96	86	2	486	25	28	18	27	1.98
68983134--68983172	16	2.4	16	95	0	69	25	10	30	33	1.89
68984113--68984235	50	2.5	50	85	2	169	31	23	17	27	1.97
68985938--68985991	27	2.0	27	85	0	72	22	25	18	33	1.97
68985832--68986045	94	2.3	94	82	3	250	27	21	16	34	1.95
68989552--68989652	49	2.1	49	90	0	157	31	8	12	46	1.73
69000167--69000197	16	1.9	16	93	0	53	41	0	22	35	1.54
69001904--69001957	27	2.0	27	100	0	108	66	3	0	29	1.09
69001907--69001951	14	3.3	14	72	27	51	68	4	0	26	1.08
69003631--69003720	42	2.2	42	87	2	128	26	12	18	42	1.86
69007386--69007476	37	2.5	37	87	3	130	27	21	16	34	1.95
69010146--69010195	21	2.4	20	78	18	57	16	36	26	22	1.94
69012883--69013034	42	3.6	42	83	1	187	28	26	15	28	1.96
69014954--69015005	24	2.2	24	96	0	95	48	1	3	46	1.31
69025333--69025372	5	7.8	5	83	5	53	5	17	0	77	0.94
69025335--69025376	10	4.2	10	88	8	59	7	16	0	76	1.00
69025338--69025373	11	3.4	11	92	3	56	5	16	0	77	0.94
69026097--69026156	19	2.9	20	74	20	61	51	6	0	41	1.28
69029664--69029836	46	3.7	46	78	13	201	21	20	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69029661--69029831	93	1.8	93	93	0	297	21	21	28	28	1.98
69036021--69036086	33	2.0	33	93	0	114	31	25	19	22	1.98
69038538--69038686	80	1.9	80	81	2	183	22	30	24	22	1.99
69038579--69038686	40	2.7	38	85	8	128	21	29	25	23	1.99
69046653--69046801	80	1.9	80	81	2	183	22	30	24	22	1.99
69046694--69046801	40	2.7	38	85	8	128	21	29	25	23	1.99
69053363--69053678	46	6.7	47	76	10	229	27	18	30	23	1.98
69060449--69060628	40	4.5	40	80	8	188	26	23	26	23	2.00
69060451--69060600	80	1.9	81	87	4	223	25	22	27	24	2.00
69060450--69060668	80	2.7	78	79	5	213	26	24	26	22	2.00
69060450--69060654	40	5.1	41	78	10	138	26	24	26	22	2.00
69065296--69065534	40	6.0	40	93	0	388	20	22	30	27	1.98
69065698--69065748	25	2.0	25	81	7	59	35	13	29	21	1.92
69068843--69069315	48	9.9	48	97	0	865	34	6	28	30	1.83
69069456--69069558	37	2.8	37	95	0	179	23	19	32	25	1.98
69070664--69070764	49	2.1	48	86	1	139	24	23	20	30	1.99
69071367--69071421	27	2.0	27	96	0	101	45	21	16	16	1.85
69083251--69083354	53	2.0	52	83	5	129	38	14	24	23	1.92
69086640--69086723	42	2.0	41	90	2	132	30	19	4	45	1.71
69086655--69086726	21	3.4	21	65	5	56	33	18	4	44	1.69
69091335--69091404	27	2.5	28	95	2	124	28	14	27	30	1.95
69091335--69091416	27	3.0	27	85	8	78	29	15	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69101648--69101717	27	2.5	28	95	2	124	28	14	27	30	1.95
69101648--69101729	27	3.0	27	85	8	78	29	15	24	30	1.96
69106514--69106598	26	3.3	25	80	6	91	31	15	20	32	1.93
69118486--69118637	40	3.8	40	80	5	155	23	26	23	26	2.00
69121552--69121736	79	2.3	81	82	7	218	23	27	24	24	2.00
69121552--69121736	40	4.7	40	78	6	180	23	27	24	24	2.00
69127377--69127500	39	3.2	39	94	1	203	22	18	32	26	1.97
69137782--69137918	39	3.5	39	81	9	154	22	28	23	25	1.99
69137782--69137971	40	4.8	39	78	10	138	24	28	22	24	1.99
69137789--69137969	78	2.3	78	80	7	188	24	28	22	24	2.00
69137782--69137971	39	4.8	38	75	7	139	24	28	22	24	1.99
69148639--69148691	24	2.2	25	83	10	65	67	1	3	26	1.17
69151076--69151135	30	2.0	31	84	15	81	48	3	1	46	1.28
69152895--69152936	13	2.9	14	80	13	50	54	0	0	45	0.99
69152899--69152935	16	2.3	16	86	13	58	59	0	0	40	0.97
69154051--69154077	2	13.5	2	100	0	54	48	0	0	51	1.00
69157516--69157559	16	2.9	15	83	12	54	47	0	0	52	1.00
69158704--69158804	24	4.2	24	90	0	139	33	2	38	24	1.71
69159773--69159803	8	3.9	8	100	0	62	38	25	25	9	1.86
69160226--69160337	27	4.1	27	75	12	95	18	22	21	37	1.94
69160226--69160337	54	2.1	54	83	6	138	18	22	21	37	1.94
69161880--69162103	40	5.6	40	84	3	272	26	27	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69161880--69162103	81	2.8	80	86	4	281	26	27	21	23	1.99
69161910--69162104	81	2.4	80	88	2	282	26	28	22	23	1.99
69166775--69166877	29	3.6	27	81	5	98	29	33	16	21	1.95
69173952--69174054	29	3.6	28	81	5	116	21	16	33	29	1.95
69175882--69175984	29	3.6	27	81	5	98	29	33	16	21	1.95
69182156--69182270	40	2.8	40	92	1	176	29	26	20	23	1.99
69198859--69198956	28	3.5	28	84	4	108	29	16	24	29	1.96
69206526--69206623	28	3.5	28	84	4	108	29	16	24	29	1.96
69208098--69208198	28	3.5	28	86	6	114	29	26	13	29	1.94
69216020--69216120	28	3.5	28	86	6	114	29	26	13	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318