genome.fa.s2.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  177  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54962914--54962972	20	3.0	20	92	0	100	35	11	20	32	1.89
54963023--54963188	24	7.0	24	91	4	248	28	22	22	26	1.99
54963023--54963188	47	3.5	47	90	5	246	28	22	22	26	1.99
54963380--54963474	31	3.1	31	98	0	181	38	15	22	23	1.92
54966280--54966458	27	6.7	27	88	1	245	41	20	7	30	1.79
54966280--54966530	27	9.3	27	83	3	215	40	20	7	30	1.81
54966508--54966745	27	8.8	27	89	1	282	29	23	7	39	1.81
54966481--54966756	81	3.4	81	80	4	277	31	23	7	38	1.82
54966724--54966809	27	3.2	27	74	0	73	37	25	8	29	1.85
54967983--54968030	25	1.9	25	86	0	69	33	25	16	25	1.96
54968074--54968132	20	3.0	20	92	0	100	35	11	20	32	1.89
54968183--54968348	24	7.0	24	91	4	248	28	22	22	26	1.99
54968183--54968348	47	3.5	47	90	5	246	28	22	22	26	1.99
54968540--54968634	31	3.1	31	96	0	172	40	14	22	23	1.91
54972723--54972914	80	2.4	80	89	1	287	26	29	22	20	1.99
54972697--54972914	120	1.8	119	85	4	305	26	28	22	22	1.99
54972723--54972913	40	4.8	39	89	2	256	26	29	22	20	1.99
54977027--54977067	14	3.1	14	82	10	50	58	14	0	26	1.37
54979215--54979359	23	6.3	23	73	6	87	35	24	11	28	1.91
54979249--54979361	46	2.5	46	77	2	120	36	22	11	30	1.89
54979231--54979383	23	6.7	23	74	5	76	33	20	12	32	1.90
54979489--54979580	37	2.5	38	85	3	116	22	28	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54979704--54979753	22	2.3	22	80	13	66	38	12	20	30	1.88
54980408--54980455	18	2.7	18	87	3	71	20	8	18	52	1.71
54980408--54980466	18	3.3	18	79	11	68	20	10	20	49	1.77
54980372--54980472	34	2.9	34	75	4	85	26	8	13	50	1.71
54984006--54984157	43	3.6	41	78	9	144	32	22	17	27	1.96
54987424--54987457	2	17.0	2	100	0	68	50	0	0	50	1.00
54988193--54988306	27	4.3	27	83	2	142	27	20	16	35	1.94
54990318--54990494	40	4.5	40	83	4	180	23	25	22	28	1.99
54998350--54998518	40	4.2	40	80	4	173	23	26	21	28	1.99
55001763--55001986	78	2.8	80	80	9	253	24	20	27	27	1.99
55001763--55001986	40	5.7	40	83	6	251	24	20	27	27	1.99
55001844--55002005	40	4.1	40	80	10	126	24	20	28	25	1.99
55007898--55008082	79	2.3	82	83	7	229	24	24	27	23	2.00
55007899--55008090	40	4.8	40	79	7	151	24	24	28	22	2.00
55007898--55008115	79	2.7	79	79	6	183	24	23	27	24	2.00
55013558--55013660	40	2.6	40	90	3	154	22	21	30	26	1.99
55013562--55013679	40	3.0	40	87	2	148	24	22	27	25	1.99
55016352--55016384	16	1.9	18	88	11	52	39	15	15	30	1.88
55018356--55018556	40	5.0	40	90	3	289	22	18	28	29	1.98
55021075--55021200	63	2.0	63	96	0	234	35	4	17	42	1.70
55021086--55021217	63	2.1	63	91	2	212	34	3	18	43	1.68
55021780--55021835	25	2.2	25	78	6	60	28	21	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55026215--55026294	29	2.8	29	84	0	106	28	28	13	28	1.94
55026548--55026582	16	2.2	16	89	0	52	11	17	17	54	1.71
55030436--55030488	27	2.0	27	88	0	79	15	16	20	47	1.83
55030773--55030843	29	2.4	29	88	4	99	28	30	12	28	1.93
55033800--55033831	17	1.9	16	93	6	55	46	12	21	18	1.82
55040520--55040567	24	2.0	25	91	4	80	14	27	25	33	1.94
55046942--55046986	2	22.5	2	81	0	54	48	4	0	46	1.22
55052685--55052846	39	4.2	39	91	2	254	24	31	20	23	1.98
55052685--55052835	77	1.9	79	93	2	261	23	31	21	23	1.98
55060587--55060779	39	4.9	39	90	0	251	23	31	21	23	1.98
55060617--55060779	39	4.2	39	93	0	263	24	31	20	23	1.98
55066194--55066349	43	3.6	42	82	10	183	30	27	17	23	1.97
55066194--55066350	86	1.8	85	83	6	210	31	27	17	23	1.97
55071793--55072002	53	3.9	53	73	4	179	20	24	17	37	1.94
55075258--55075424	40	4.2	40	82	2	185	24	26	22	26	2.00
55083281--55083447	40	4.2	40	82	2	185	24	26	22	26	2.00
55092049--55092179	47	2.8	47	82	2	147	33	25	16	23	1.96
55092720--55092779	29	2.1	28	81	3	66	28	26	3	41	1.71
55099567--55099697	47	2.8	47	83	0	172	34	26	15	23	1.94
55107074--55107147	24	3.0	24	75	13	78	32	21	24	21	1.98
55109214--55109238	12	2.1	12	100	0	50	48	0	16	36	1.46
55122591--55122691	26	3.9	26	96	2	177	30	20	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55122591--55122691	53	1.9	51	94	4	175	30	20	18	29	1.97
55129643--55129846	40	5.1	40	80	8	166	25	26	22	25	2.00
55129664--55129846	79	2.3	81	83	7	232	25	26	22	25	2.00
55132221--55132269	25	2.0	25	91	0	80	34	22	14	28	1.93
55132306--55132363	21	2.7	22	84	10	77	32	12	24	31	1.91
55134238--55134385	41	3.7	40	81	4	192	20	23	27	27	1.99
55134242--55134385	40	3.6	40	80	2	182	20	23	28	27	1.99
55142303--55142452	41	3.7	41	83	1	212	20	24	28	27	1.99
55146742--55146869	63	2.0	63	95	0	229	35	19	24	21	1.96
55149674--55149699	10	2.6	10	100	0	52	38	11	7	42	1.70
55151583--55151614	15	2.1	15	94	0	55	28	12	9	50	1.71
55152931--55152989	27	2.1	29	84	6	77	52	3	1	42	1.28
55153647--55153690	21	2.1	21	87	8	63	0	15	2	81	0.78
55153648--55153688	14	3.1	14	79	6	50	0	12	2	85	0.70
55154931--55154970	21	1.9	21	85	10	55	12	25	10	52	1.70
55156618--55156774	43	3.7	43	76	9	149	30	26	19	24	1.98
55158150--55158392	24	10.1	24	96	0	414	35	25	18	20	1.95
55165375--55165617	24	10.1	24	97	0	423	36	25	18	20	1.95
55168176--55168301	39	3.2	39	88	0	171	30	24	20	23	1.98
55170708--55170738	11	2.8	11	100	0	62	70	9	0	19	1.14
55173294--55173411	46	2.6	43	85	9	148	25	29	18	26	1.98
55173385--55173440	28	2.0	29	89	6	89	23	30	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55173829--55173887	30	2.0	30	89	0	91	28	25	13	32	1.94
55177102--55177163	25	2.5	25	80	12	74	59	1	1	37	1.17
55177348--55177378	14	2.2	14	94	0	53	16	16	51	16	1.77
55181749--55181975	39	5.8	39	83	4	262	30	16	22	30	1.96
55181756--55181975	117	1.9	117	86	3	318	30	16	22	29	1.96
55192504--55192573	28	2.5	28	86	4	97	28	15	27	28	1.96
55192846--55192902	25	2.4	23	80	13	62	63	0	3	33	1.12
55193494--55193519	2	13.0	2	100	0	52	50	0	0	50	1.00
55200497--55200676	39	4.6	39	81	4	211	24	21	30	23	1.99
55207594--55207878	24	11.9	24	98	0	516	20	18	25	35	1.96
55215652--55215934	24	11.9	24	97	0	498	20	19	25	34	1.96
55222795--55222961	40	4.2	40	78	6	160	25	22	27	24	2.00
55225863--55225972	40	2.8	40	85	0	148	26	23	26	23	2.00
55225863--55226012	40	3.8	39	80	7	133	26	22	26	24	2.00
55230276--55230494	40	5.4	40	86	0	258	26	22	26	25	2.00
55230276--55230494	120	1.8	121	85	3	307	26	22	26	25	2.00
55237228--55237400	46	3.7	46	76	13	174	22	18	28	30	1.97
55237222--55237392	93	1.8	93	88	0	261	22	19	28	29	1.98
55239014--55239063	19	2.6	19	100	0	100	16	34	34	16	1.90
55239985--55240139	47	3.3	47	80	13	192	30	18	29	21	1.97
55243479--55243647	46	3.7	46	78	14	195	20	18	30	30	1.97
55243471--55243639	93	1.8	91	91	2	275	21	19	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55250872--55251030	45	3.6	45	86	3	198	23	22	28	25	1.99
55256440--55256473	17	2.0	17	88	0	50	82	0	17	0	0.67
55257728--55258020	40	7.5	39	86	7	375	23	23	28	24	2.00
55257728--55258020	79	3.7	80	88	5	404	23	23	28	24	2.00
55257728--55258020	117	2.5	118	87	6	407	23	23	28	24	2.00
55264286--55264543	39	6.6	39	91	7	391	22	22	28	25	1.99
55264287--55264543	79	3.3	79	92	3	414	22	22	28	26	1.99
55266590--55266614	9	2.8	9	100	0	50	68	12	8	12	1.40
55267128--55267163	16	2.2	16	100	0	72	55	0	25	19	1.43
55267247--55267382	43	3.2	41	84	4	146	23	16	28	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318