genome.fa.s2.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  137  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41924735--41924799	22	3.0	22	77	8	69	21	23	21	33	1.97
41924958--41925059	27	3.8	27	81	5	116	19	21	20	38	1.94
41925196--41925376	6	29.8	6	75	14	158	20	17	13	48	1.80
41925221--41925376	30	5.4	30	83	10	207	19	16	14	49	1.80
41925196--41925359	73	2.2	73	84	8	201	20	17	13	48	1.81
41932837--41932919	30	2.8	30	70	7	87	26	15	28	28	1.96
41934081--41934142	30	2.0	30	84	3	79	30	24	8	37	1.84
41936502--41936630	24	5.5	24	78	10	108	33	19	20	26	1.97
41936502--41936631	46	2.7	48	81	9	151	33	19	20	26	1.97
41936516--41936638	23	5.3	23	76	5	99	34	17	21	26	1.96
41938819--41939005	71	2.7	68	93	5	281	18	28	18	34	1.95
41938842--41939005	71	2.3	71	100	0	328	18	28	17	35	1.94
41938842--41939039	71	2.8	70	92	3	276	20	28	17	33	1.95
41946386--41946572	71	2.7	68	93	5	281	18	28	18	34	1.95
41946409--41946572	71	2.3	71	100	0	328	18	28	17	35	1.94
41946409--41946606	71	2.8	70	92	3	276	20	28	17	33	1.95
41953177--41953215	19	2.1	19	90	0	60	53	10	2	33	1.48
41954534--41954592	24	2.4	25	82	5	75	35	15	22	27	1.94
41954599--41954650	23	2.3	23	79	0	59	34	21	21	23	1.97
41957499--41957559	30	2.0	30	87	0	86	39	6	22	31	1.80
41959315--41959481	27	6.2	27	81	7	90	35	24	8	31	1.86
41959410--41959565	27	5.8	27	86	2	206	39	23	11	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41965758--41965929	67	2.6	66	81	7	170	31	16	29	22	1.96
41965782--41965965	67	2.8	64	78	8	203	28	16	30	23	1.96
41971427--41971516	27	3.3	28	81	6	105	38	18	10	32	1.84
41971451--41971526	27	2.8	26	76	7	80	38	19	10	31	1.86
41971427--41971532	54	2.0	54	83	9	137	37	19	10	32	1.86
41971429--41971544	54	2.2	53	80	11	130	37	20	11	30	1.88
41971522--41971811	27	10.8	27	86	4	374	27	24	7	40	1.82
41971522--41971811	81	3.6	81	94	1	487	27	24	7	40	1.82
41971882--41971946	27	2.4	27	87	5	87	30	20	27	21	1.98
41973103--41973149	25	1.9	25	86	4	69	34	25	14	25	1.94
41973197--41973252	11	5.5	11	71	16	57	37	10	19	32	1.86
41973192--41973252	20	3.0	20	95	0	113	36	9	19	34	1.85
41973302--41973454	24	6.4	24	95	2	254	29	22	22	26	1.99
41973660--41973754	31	3.1	31	98	0	181	38	15	22	23	1.92
41976074--41976134	30	2.0	30	87	0	86	39	6	22	31	1.80
41976844--41978712	939	2.0	937	94	0	3299	35	10	23	30	1.89
41980458--41980618	29	5.6	29	87	0	178	27	15	32	24	1.95
41987702--41987871	40	4.2	40	85	3	225	21	28	24	25	1.99
41995797--41995966	40	4.2	40	85	3	225	21	28	24	25	1.99
41998642--41998670	15	1.9	15	100	0	58	34	0	17	48	1.47
41999262--41999300	18	2.2	18	100	0	78	20	5	20	53	1.64
42007838--42007976	28	4.9	28	89	5	197	30	26	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42007829--42007976	59	2.6	57	86	3	199	30	27	15	27	1.96
42008798--42008860	14	4.6	14	74	7	67	36	14	1	47	1.54
42008783--42008868	40	2.2	39	97	2	163	39	12	2	45	1.55
42012297--42012474	40	4.5	40	88	3	245	23	27	23	25	2.00
42014223--42014403	46	3.9	46	80	9	224	20	21	30	27	1.98
42014225--42014396	93	1.8	93	96	0	317	20	22	30	27	1.98
42017317--42017385	15	4.6	15	83	0	84	11	17	13	57	1.64
42017308--42017395	30	3.0	30	81	8	99	10	17	15	56	1.66
42019764--42019939	46	3.8	46	81	10	232	20	21	29	28	1.98
42019760--42019931	93	1.8	93	96	0	317	20	22	30	27	1.98
42028757--42028933	40	4.4	40	90	3	261	23	28	23	24	2.00
42030981--42031152	93	1.8	93	94	0	308	27	30	21	20	1.98
42030973--42031148	46	3.8	46	81	10	214	28	29	21	21	1.98
42033526--42033613	29	3.0	29	80	8	97	56	15	17	10	1.66
42033526--42033604	15	5.4	15	77	10	83	58	13	17	10	1.63
42033537--42033613	15	5.2	15	75	9	77	55	15	16	11	1.68
42036473--42036645	46	3.8	45	79	7	204	27	29	20	21	1.98
42038329--42038554	39	5.7	39	81	6	215	23	22	28	26	1.99
42038331--42038573	40	6.1	40	80	7	149	23	22	28	25	1.99
42038422--42038587	79	2.1	78	79	9	176	24	22	28	24	1.99
42042316--42042404	30	3.0	30	79	11	94	56	15	17	10	1.67
42042316--42042398	15	5.6	14	73	10	58	55	16	18	9	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42042327--42042404	15	5.2	15	75	9	70	55	15	17	11	1.69
42045263--42045436	46	3.8	46	77	15	198	29	29	20	20	1.98
42045268--42045455	46	4.1	45	73	14	143	29	29	20	20	1.98
42049732--42050544	48	17.0	48	89	2	1224	35	6	27	30	1.82
42050592--42050732	37	3.8	37	89	0	212	25	17	33	23	1.96
42051959--42052226	40	6.8	39	94	2	439	25	20	28	25	1.99
42051959--42052226	78	3.4	78	93	3	439	25	20	28	25	1.99
42055535--42055705	46	3.8	45	73	12	145	29	30	19	20	1.97
42059991--42060800	48	17.0	48	88	3	1158	35	6	26	31	1.81
42060846--42060984	36	3.8	36	88	3	183	25	17	33	23	1.96
42062791--42062868	15	5.4	14	77	7	68	58	14	16	10	1.62
42062791--42062877	29	3.0	29	77	11	88	57	16	16	10	1.65
42062791--42062868	14	5.4	15	75	13	74	58	14	16	10	1.62
42062802--42062877	15	5.2	15	72	12	68	56	15	15	11	1.67
42065738--42065903	46	3.7	44	79	12	201	28	28	21	21	1.98
42065738--42065906	92	1.8	91	93	3	295	27	29	21	21	1.98
42070206--42071023	48	17.0	48	90	1	1253	35	6	27	31	1.82
42070206--42071023	290	2.8	289	92	1	1370	35	6	27	31	1.82
42071070--42071210	37	3.8	37	89	0	212	25	17	33	23	1.96
42072443--42072714	40	6.8	40	96	0	472	25	21	27	25	1.99
42076198--42077011	48	17.0	48	94	1	1393	34	6	27	31	1.81
42077055--42077198	37	3.9	37	89	0	218	24	19	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42078406--42078637	40	5.8	40	93	0	365	26	21	26	25	1.99
42081478--42081553	38	2.0	38	100	0	152	36	10	18	34	1.85
42087193--42087353	29	5.6	29	86	7	186	26	26	15	31	1.96
42096250--42096602	40	8.8	40	81	0	364	18	27	16	37	1.92
42096309--42096371	20	3.2	20	68	8	56	14	30	20	34	1.92
42103352--42103454	29	3.5	29	80	7	82	29	28	13	29	1.94
42103384--42103467	29	2.9	29	89	0	114	29	26	15	28	1.96
42108491--42108593	29	3.6	27	81	5	98	29	33	16	21	1.95
42116287--42116389	29	3.6	27	81	5	98	29	33	16	21	1.95
42135351--42135573	77	2.8	80	83	11	271	26	26	21	24	1.99
42135332--42135573	40	6.1	40	84	8	284	26	26	21	25	1.99
42143435--42143601	79	2.1	78	88	7	241	26	26	20	25	1.99
42143435--42143654	40	5.7	39	84	10	249	26	26	21	25	2.00
42143435--42143654	39	5.7	39	83	10	224	26	26	21	25	2.00
42143463--42143638	38	4.6	38	85	7	153	27	25	19	26	1.99
42148360--42148416	29	2.0	29	85	0	78	26	29	14	29	1.95
42150357--42150434	38	2.1	38	97	0	147	32	21	5	41	1.75
42150648--42150790	40	3.6	39	71	13	105	28	24	19	27	1.99
42151966--42152014	23	2.1	23	100	0	98	24	34	16	24	1.95
42155228--42155276	23	2.1	24	81	7	57	71	18	4	6	1.23
42157761--42158057	131	2.3	129	80	4	310	26	18	18	36	1.94
42169531--42170097	44	12.9	44	82	2	656	28	13	30	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42173379--42173555	40	4.4	39	78	7	169	24	25	23	26	2.00
42173379--42173551	80	2.1	81	84	3	224	24	24	23	27	2.00
42181377--42181591	40	5.4	40	84	7	242	24	25	24	26	2.00
42181386--42181591	79	2.6	80	83	3	263	24	25	23	26	2.00
42185034--42185098	25	2.6	25	97	0	121	27	12	20	40	1.88
42187676--42187706	7	4.4	7	100	0	62	29	12	25	32	1.93
42190319--42190417	28	3.5	28	79	6	101	29	27	15	28	1.96
42196378--42196478	28	3.5	28	86	6	114	29	26	13	29	1.94
42196503--42196596	29	3.2	29	96	0	170	26	26	15	30	1.96
42196466--42196596	58	2.3	58	85	2	165	25	30	16	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318