Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  314  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97474481--97474515
16
2.3
15
90
5
52
62
2
2
31
1.24
97474632--97474691
23
2.9
20
70
15
59
56
5
6
31
1.47
97474670--97474832
25
6.3
26
71
12
95
55
4
6
34
1.44
97475367--97475430
30
2.1
30
88
0
92
20
7
46
25
1.77
97476206--97476272
28
2.3
28
82
12
82
67
1
4
26
1.19
97476206--97476265
29
2.1
28
84
12
77
70
1
3
25
1.12
97478647--97478680
2
17.0
2
93
0
59
52
0
0
47
1.00
97483289--97483338
25
2.0
26
88
4
75
58
12
6
24
1.56
97485445--97485497
29
1.9
27
85
11
72
3
33
3
58
1.34
97492272--97492318
25
1.9
25
82
4
60
34
14
6
44
1.71
97497063--97497187
61
2.0
62
84
4
164
40
12
6
40
1.69
97505347--97505373
2
13.5
2
100
0
54
51
0
0
48
1.00
97506996--97507130
30
4.5
30
82
1
139
27
45
2
23
1.67
97507626--97507747
25
5.0
25
71
10
74
36
4
2
57
1.31
97507689--97507747
25
2.4
25
85
0
82
35
3
0
61
1.13
97507771--97507829
25
2.5
24
78
10
68
33
8
6
50
1.59
97507787--97507835
25
2.0
25
91
0
80
34
8
6
51
1.57
97507989--97508036
16
3.1
15
90
6
69
31
2
2
64
1.16
97507989--97508040
8
6.5
8
82
8
61
30
1
1
65
1.14
97511586--97511621
12
3.0
12
83
0
54
30
22
2
44
1.67
97519965--97520136
75
2.3
75
94
1
299
27
18
20
34
1.95
97520116--97520142
14
1.9
14
100
0
54
14
14
7
62
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97520041--97520311
89
3.0
89
91
0
443
26
17
18
36
1.93
97520219--97520415
108
1.8
109
95
1
360
25
18
21
34
1.96
97520332--97520528
89
2.2
90
92
0
324
25
18
19
36
1.95
97520492--97520539
15
3.3
15
82
5
53
16
12
6
64
1.46
97521401--97521535
30
4.5
30
85
1
157
26
47
3
22
1.68
97522019--97522148
23
5.5
23
67
22
74
34
4
2
58
1.31
97522036--97522152
25
4.7
25
73
6
85
35
4
2
57
1.32
97522176--97522234
25
2.5
24
78
10
68
33
8
6
50
1.59
97522192--97522240
25
2.0
25
91
0
80
34
8
6
51
1.57
97522395--97522442
16
3.1
15
90
6
69
31
2
2
64
1.16
97522395--97522446
8
6.5
8
82
8
61
30
1
1
65
1.14
97523006--97523044
2
19.5
2
100
0
78
51
0
0
48
1.00
97523297--97523342
5
8.6
5
95
4
65
43
0
0
56
0.99
97523292--97523345
6
9.7
6
93
4
71
46
0
0
53
1.00
97523978--97524310
131
2.6
131
85
3
424
34
19
18
27
1.95
97525287--97525317
2
15.5
2
100
0
62
48
0
0
51
1.00
97526294--97526373
40
2.0
40
100
0
160
52
5
12
30
1.60
97534717--97534768
14
3.6
14
76
7
50
57
1
3
36
1.28
97541823--97541880
17
3.4
17
97
0
107
15
46
22
15
1.83
97542777--97542894
25
4.8
25
74
7
98
33
22
22
21
1.97
97542777--97542905
50
2.6
49
81
4
136
34
22
23
20
1.97
97543466--97543505
21
1.9
21
89
0
62
37
25
2
35
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97548593--97548794
105
1.9
105
87
2
298
36
28
14
20
1.93
97548570--97548800
35
6.6
35
81
4
241
36
29
14
19
1.91
97549583--97549651
32
2.2
32
80
15
81
28
21
4
44
1.71
97555960--97556035
37
2.1
37
94
0
134
39
19
10
30
1.86
97558088--97558114
11
2.5
11
100
0
54
29
11
18
40
1.85
97562776--97562808
17
1.9
17
88
11
50
30
21
0
48
1.50
97562910--97563021
49
2.3
49
81
6
129
53
8
1
35
1.43
97562930--97563047
50
2.4
49
84
8
152
54
11
3
31
1.52
97563434--97563491
29
2.0
29
96
0
107
36
24
15
24
1.94
97577026--97577077
19
2.6
21
79
14
65
28
3
1
65
1.21
97578660--97578721
30
2.1
30
100
0
124
37
3
19
40
1.68
97585039--97585081
20
2.2
20
100
0
86
27
9
13
48
1.73
97587990--97588041
26
2.0
26
92
0
86
36
1
21
40
1.64
97595669--97595992
83
3.9
83
78
11
326
41
23
7
28
1.80
97596051--97596278
79
2.8
83
78
11
226
37
23
8
31
1.84
97597872--97598031
86
1.9
86
100
0
320
39
10
8
41
1.70
97603653--97603681
4
7.2
4
100
0
58
24
0
24
51
1.48
97605840--97605873
2
17.0
2
100
0
68
50
0
0
50
1.00
97607412--97607438
7
3.9
7
100
0
54
14
0
0
85
0.61
97614786--97614865
29
2.8
28
75
17
74
61
5
3
30
1.35
97629092--97629188
37
2.6
37
87
8
108
30
22
8
38
1.84
97629108--97629188
37
2.2
37
93
4
137
29
20
8
40
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97629117--97629192
37
2.1
37
100
0
152
27
21
7
43
1.80
97636991--97637040
20
2.5
20
90
3
82
52
12
10
26
1.70
97638008--97638059
2
25.5
2
84
3
59
48
7
1
42
1.43
97640713--97640784
3
24.3
3
97
2
137
65
0
0
34
0.93
97641281--97641327
20
2.3
20
85
0
58
42
2
55
0
1.12
97641421--97641466
19
2.5
18
82
3
56
13
2
4
80
0.95
97642569--97642593
13
1.9
13
100
0
50
64
4
16
16
1.44
97642584--97642841
68
3.8
67
91
2
383
37
16
16
29
1.91
97642584--97642837
135
1.9
137
90
3
415
37
16
16
29
1.91
97642540--97642849
68
4.6
67
86
5
378
38
15
17
29
1.90
97642795--97643045
71
3.5
70
86
6
337
29
20
17
31
1.96
97642981--97643142
86
1.9
85
90
1
261
33
19
16
29
1.94
97643067--97643200
71
1.9
71
90
0
214
29
23
16
30
1.96
97642912--97643291
157
2.4
160
96
1
705
31
21
17
29
1.96
97656059--97656107
3
16.3
3
100
0
98
65
0
0
34
0.93
97656606--97656651
20
2.3
20
85
3
58
43
2
54
0
1.12
97656745--97656790
19
2.5
18
82
3
56
13
2
4
80
0.95
97661776--97661801
12
2.2
12
100
0
52
46
0
15
38
1.46
97662261--97662302
21
1.9
21
90
9
66
16
11
4
66
1.40
97663006--97663054
19
2.5
19
93
3
80
46
2
10
40
1.49
97666530--97666567
18
2.1
19
90
5
60
2
0
28
68
1.03
97671684--97671725
14
3.1
14
73
13
52
59
11
11
16
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97671675--97671725
26
2.0
26
100
0
102
56
11
11
19
1.65
97671851--97671906
27
2.0
28
93
3
96
48
0
26
25
1.52
97673718--97673753
2
18.0
2
100
0
72
50
0
0
50
1.00
97675818--97675879
24
2.5
24
86
2
79
59
4
9
25
1.49
97676268--97676306
9
4.3
9
83
0
51
58
2
0
38
1.12
97676916--97676945
15
2.0
15
100
0
60
13
6
6
73
1.24
97676917--97676954
15
2.6
14
88
12
51
15
7
5
71
1.28
97678937--97678975
20
2.0
21
85
14
57
33
2
5
58
1.33
97678911--97678965
23
2.4
23
82
11
76
29
1
1
67
1.11
97683253--97683283
14
2.2
14
94
0
53
48
6
0
45
1.28
97684005--97684099
30
3.2
29
77
5
109
28
24
2
45
1.65
97684337--97684380
15
2.7
17
79
10
56
65
13
6
13
1.44
97685136--97685196
17
3.8
17
76
20
60
37
6
3
52
1.44
97687686--97688195
258
2.0
257
98
0
975
27
21
24
26
1.99
97690074--97690188
57
2.0
57
100
0
230
33
15
22
27
1.95
97691683--97692138
246
1.9
244
81
3
567
33
12
10
44
1.76
97694636--97694680
15
3.0
15
100
0
90
40
13
6
40
1.71
97700620--97700702
31
2.7
31
92
0
130
37
3
24
34
1.73
97700940--97701033
47
2.0
47
95
0
170
29
25
25
19
1.98
97702968--97703058
34
2.6
35
82
6
123
28
19
32
18
1.96
97708389--97708433
21
2.1
21
83
0
54
44
15
20
20
1.87
97719254--97719299
23
2.0
23
82
0
56
17
17
17
47
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97724647--97724704
31
1.9
30
86
6
82
62
18
6
12
1.52
97728706--97728749
21
2.1
21
100
0
88
25
9
34
31
1.87
97730355--97730438
44
1.9
44
97
0
159
40
19
11
28
1.87
97733199--97733243
23
2.0
23
81
0
54
57
2
2
37
1.23
97739051--97739156
25
4.2
26
96
3
198
35
25
7
31
1.84
97739051--97739156
51
2.1
51
100
0
212
35
25
7
31
1.84
97744608--97744661
26
2.1
27
86
6
76
25
14
22
37
1.93
97744617--97744700
26
3.2
26
81
5
80
29
13
20
36
1.90
97746146--97746253
26
4.2
26
95
0
198
36
25
6
31
1.82
97752861--97752910
19
2.5
20
90
3
75
38
2
10
50
1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318