genome.fa.s2.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  112  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34147424--34147644	122	1.8	122	86	2	318	31	10	23	33	1.90
34147641--34147770	40	3.2	40	84	4	174	22	24	29	23	1.99
34155396--34155616	122	1.8	122	86	2	318	31	10	23	33	1.90
34155613--34155742	40	3.2	40	84	4	174	22	24	29	23	1.99
34165739--34165763	7	3.6	7	100	0	50	28	0	28	44	1.55
34166313--34166407	33	2.9	33	85	4	113	29	24	24	22	1.99
34166553--34166602	26	1.9	26	83	0	64	38	26	20	16	1.92
34166583--34166656	27	2.8	27	85	2	96	36	18	22	21	1.95
34174343--34174519	43	4.1	43	93	0	282	13	23	31	31	1.93
34174705--34174859	29	5.4	29	68	11	104	21	17	30	29	1.96
34174673--34174841	58	2.9	58	92	0	277	22	19	28	28	1.98
34174764--34174859	28	3.4	28	70	12	79	20	17	33	28	1.96
34187007--34187233	40	5.7	40	81	2	240	15	29	17	37	1.91
34187016--34187161	20	7.3	20	67	9	73	15	30	19	34	1.93
34189959--34190028	35	2.0	35	100	0	140	25	8	25	40	1.84
34193480--34193564	42	2.0	42	97	0	161	45	34	7	12	1.70
34196340--34196380	20	2.0	20	85	0	55	14	26	29	29	1.95
34202033--34202159	48	2.6	48	92	0	209	26	29	18	25	1.98
34210327--34210533	53	3.8	54	75	3	184	38	19	23	19	1.94
34212124--34212162	15	2.6	15	95	0	69	15	15	15	53	1.73
34212124--34212182	30	2.0	30	83	6	75	13	16	13	55	1.68
34216276--34216385	40	2.8	40	85	0	148	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34218405--34218641	50	4.7	50	80	3	260	24	18	27	29	1.98
34218410--34218591	101	1.8	101	87	2	276	24	18	26	29	1.98
34222025--34222081	25	2.3	25	76	11	62	28	19	12	40	1.87
34232807--34233070	47	5.7	44	76	12	208	21	29	20	28	1.98
34232807--34233073	94	2.9	91	78	12	301	22	29	20	28	1.98
34232807--34233121	94	3.4	89	75	14	264	22	29	19	28	1.98
34254654--34254682	2	14.5	2	100	0	58	48	0	0	51	1.00
34257435--34257537	29	3.6	28	81	5	116	21	16	33	29	1.95
34261201--34261270	27	2.5	28	95	2	124	28	14	27	30	1.95
34261201--34261282	27	3.0	27	85	8	78	29	15	24	30	1.96
34269224--34269293	27	2.5	28	95	2	124	28	14	27	30	1.95
34269224--34269305	27	3.0	27	85	8	78	29	15	24	30	1.96
34273794--34273844	27	1.9	27	88	4	77	19	27	21	31	1.97
34273799--34273856	27	2.1	27	83	0	71	20	25	17	36	1.94
34275086--34275177	42	2.2	42	92	0	148	33	18	15	32	1.92
34275325--34275394	25	2.8	26	89	6	108	24	25	27	22	2.00
34276117--34276181	27	2.4	27	82	5	78	21	24	18	35	1.96
34276235--34276320	27	3.1	27	80	14	104	36	8	15	40	1.77
34276322--34276481	27	5.9	27	78	4	153	30	8	20	40	1.83
34276297--34276448	54	2.8	53	80	2	169	30	6	21	42	1.78
34276322--34276481	54	3.0	53	80	3	185	30	8	20	40	1.83
34276480--34276677	27	7.3	27	90	2	290	37	7	25	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34289973--34290004	16	2.0	16	93	0	55	43	15	25	15	1.86
34290218--34290364	29	5.1	29	85	2	181	27	12	29	29	1.93
34290218--34290364	57	2.6	57	87	3	206	27	12	29	29	1.93
34294756--34294901	29	5.1	29	89	0	206	27	14	30	28	1.95
34295860--34295896	16	2.3	16	100	0	74	35	18	16	29	1.93
34300862--34301009	40	3.7	40	84	5	165	23	27	22	26	1.99
34303882--34304057	46	3.8	46	79	10	196	22	21	27	28	1.99
34303879--34304049	93	1.8	93	92	0	288	22	21	28	28	1.99
34305507--34305622	58	2.0	58	98	0	223	28	12	15	43	1.84
34305775--34305928	41	3.7	41	85	6	193	29	16	25	28	1.96
34305773--34305947	85	2.1	84	78	12	189	29	16	25	29	1.96
34308441--34308609	40	4.2	40	80	4	173	23	26	21	28	1.99
34314221--34314321	50	2.0	50	88	0	148	24	20	11	42	1.86
34314320--34314381	6	10.2	6	87	1	61	17	20	4	56	1.59
34327161--34327290	9	14.3	9	68	23	60	61	2	0	35	1.14
34327155--34327303	18	8.1	19	69	20	84	59	2	0	37	1.14
34327161--34327224	26	2.4	25	77	10	65	59	3	0	37	1.13
34327266--34327353	20	4.3	21	72	13	67	53	1	2	43	1.20
34327328--34327407	36	2.2	36	82	8	92	60	2	3	33	1.28
34327837--34328099	9	28.2	9	64	16	65	35	3	2	58	1.28
34327866--34328071	20	10.9	20	63	22	72	38	3	1	56	1.27
34327987--34328079	26	3.5	26	77	18	84	31	1	3	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34328964--34329015	25	2.1	25	96	0	95	32	11	19	36	1.87
34338479--34338529	24	2.1	24	100	0	102	21	13	23	41	1.89
34341990--34342029	17	2.4	17	86	0	53	37	7	30	25	1.83
34343600--34343642	14	3.1	14	86	0	68	37	9	18	34	1.83
34343600--34343702	28	3.7	27	79	5	89	38	9	19	32	1.84
34343634--34343702	14	4.9	14	72	12	61	39	10	20	30	1.85
34345293--34345366	28	2.6	28	91	4	114	31	25	14	28	1.95
34350068--34350140	29	2.5	29	100	0	146	31	15	28	24	1.95
34350127--34350199	29	2.5	29	84	0	92	28	17	26	27	1.98
34356451--34356549	28	3.5	29	83	6	114	30	27	15	27	1.96
34358619--34358816	71	2.8	70	92	3	294	33	17	28	20	1.95
34358685--34358802	41	3.1	41	60	28	98	32	17	28	21	1.96
34358653--34358816	71	2.3	71	100	0	328	35	17	28	18	1.94
34366147--34366344	71	2.8	70	92	3	294	33	17	28	20	1.95
34366213--34366330	41	3.1	41	60	28	98	32	17	28	21	1.96
34366181--34366344	71	2.3	71	100	0	328	35	17	28	18	1.94
34370031--34370079	21	2.3	22	82	10	66	16	22	20	40	1.91
34380317--34380359	20	2.2	20	91	0	68	20	27	16	34	1.94
34381892--34382039	40	3.7	40	79	1	170	25	14	25	35	1.93
34383694--34383728	17	2.1	17	94	0	61	25	54	0	20	1.45
34389292--34389442	40	3.7	40	78	5	160	23	14	27	35	1.93
34390603--34390636	11	3.0	11	91	4	50	17	20	47	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34400035--34400166	29	4.6	29	91	0	201	25	32	15	26	1.95
34407426--34407595	40	4.2	40	85	3	225	21	28	24	25	1.99
34415511--34415716	40	5.2	40	88	2	283	21	29	23	25	1.99
34422240--34422304	29	2.2	29	97	0	121	29	16	27	26	1.97
34430194--34430258	29	2.2	29	97	0	121	29	16	27	26	1.97
34440440--34440534	40	2.4	40	85	7	122	24	17	30	27	1.97
34441191--34441288	24	4.0	24	90	1	142	35	3	38	22	1.70
34442908--34442988	33	2.4	34	77	8	94	28	18	23	29	1.98
34442908--34442993	32	2.6	31	73	10	73	26	18	25	29	1.98
34451761--34451790	16	1.9	16	93	6	53	50	20	0	30	1.49
34453564--34453602	18	2.2	18	100	0	78	46	28	5	20	1.72
34453696--34453752	28	2.0	29	82	3	71	45	21	3	29	1.68
34461887--34462049	71	2.3	70	98	1	317	35	17	28	19	1.94
34468144--34468170	2	13.5	2	100	0	54	51	0	0	48	1.00
34470331--34470750	210	2.0	210	99	0	822	37	20	9	33	1.85
34480079--34480216	48	2.9	48	84	2	181	31	14	22	31	1.94
34480181--34480256	38	2.0	37	82	2	89	30	14	23	31	1.94
34487183--34487298	47	2.4	48	76	1	117	34	16	19	29	1.94
34494481--34494556	34	2.2	34	85	0	98	22	19	25	32	1.97
34506733--34506858	40	3.2	39	78	6	130	21	26	24	27	1.99
34514302--34514427	40	3.2	39	80	6	139	21	25	24	28	1.99
34514241--34514427	80	2.3	80	78	12	204	22	27	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34516494--34516587	28	3.3	29	82	2	120	28	30	15	24	1.96
34522467--34522579	43	2.7	43	77	9	115	29	19	23	28	1.98
34524555--34524620	32	2.1	32	100	0	132	46	6	24	22	1.74
34536788--34536830	21	2.0	22	81	4	52	41	23	2	32	1.67
34543027--34543066	19	2.1	19	95	0	71	30	17	0	52	1.45
34543065--34543095	16	1.9	16	93	0	53	35	22	0	41	1.54
34543062--34543101	20	2.0	20	85	0	53	37	22	0	40	1.54
34543295--34543488	55	3.7	53	78	10	175	21	23	17	38	1.93
34550543--34550643	28	3.5	28	86	6	114	28	13	27	29	1.95
34550572--34550643	29	2.5	28	91	6	110	29	13	27	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318