genome.fa.s2.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  136  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41649266--41649486	47	4.8	46	82	10	188	23	19	27	29	1.98
41649313--41649435	47	2.6	47	98	0	237	23	19	27	29	1.98
41651467--41651505	20	2.0	20	85	10	53	35	20	0	43	1.52
41655347--41655374	2	14.0	2	100	0	56	50	0	0	50	1.00
41655799--41655931	48	2.8	48	81	6	153	25	15	22	36	1.94
41655799--41655909	24	4.6	24	93	2	152	23	15	23	37	1.93
41657872--41657973	29	3.5	29	95	0	186	29	14	29	26	1.95
41657872--41658033	29	5.6	29	84	2	107	26	16	32	25	1.96
41657868--41657994	58	2.2	59	85	4	179	29	14	30	25	1.95
41665576--41665736	29	5.6	29	86	7	186	26	26	15	31	1.96
41673607--41673766	29	5.5	29	87	3	107	25	26	16	31	1.96
41673630--41673766	58	2.4	58	87	7	190	27	27	14	31	1.95
41677129--41677229	29	3.5	29	94	1	177	29	14	28	26	1.95
41677129--41677289	29	5.6	29	83	3	107	26	16	31	25	1.96
41677125--41677289	58	2.9	58	81	5	174	27	15	31	25	1.96
41684905--41684967	32	2.0	32	96	0	117	26	34	7	30	1.85
41689336--41689484	80	1.9	80	81	2	183	22	30	24	22	1.99
41689377--41689484	40	2.7	38	85	8	128	21	29	25	23	1.99
41698276--41698442	40	4.2	40	79	6	169	26	22	26	24	2.00
41706287--41706428	40	3.5	40	83	1	124	27	23	26	22	1.99
41706326--41706454	40	3.2	39	84	6	152	24	22	27	25	2.00
41710595--41710647	25	2.2	25	83	12	67	41	26	0	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41711256--41711358	44	2.4	42	80	4	107	35	24	17	22	1.95
41711727--41711751	8	3.1	8	100	0	50	24	24	0	52	1.48
41712156--41712218	30	2.1	30	82	5	74	50	0	4	44	1.23
41713975--41714151	40	4.4	40	92	2	293	23	19	28	28	1.98
41713975--41714171	80	2.5	80	89	3	263	24	20	27	26	1.99
41721647--41721850	46	4.5	46	76	16	158	25	29	19	26	1.98
41721684--41721901	92	2.4	91	81	4	242	23	30	19	26	1.98
41721683--41721898	46	4.7	44	76	11	168	23	30	18	26	1.98
41725135--41725264	40	3.2	40	82	4	165	23	24	28	23	2.00
41730400--41730517	41	3.1	41	60	28	98	32	17	28	21	1.96
41730368--41730531	71	2.3	71	100	0	328	35	17	28	18	1.94
41737791--41737908	41	3.1	41	60	28	98	32	17	28	21	1.96
41737759--41737922	71	2.3	71	100	0	328	35	17	28	18	1.94
41744177--41744351	46	3.8	46	75	10	158	29	28	20	21	1.98
41744231--41744403	47	3.7	47	77	10	201	30	28	19	22	1.98
41744193--41744396	93	2.2	93	90	0	318	29	27	19	23	1.98
41746508--41746597	43	2.1	42	93	2	153	30	32	16	21	1.95
41759653--41759753	43	2.3	43	80	9	109	34	22	15	26	1.95
41760236--41760301	29	2.3	28	82	10	71	28	25	1	43	1.63
41768323--41768351	14	2.1	14	100	0	58	13	13	13	58	1.63
41768414--41768687	27	10.2	27	82	7	308	26	20	10	42	1.84
41768414--41768687	81	3.4	80	85	5	356	26	20	10	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41768692--41768887	27	7.3	27	86	0	257	35	19	19	25	1.96
41769086--41769168	27	3.1	26	87	5	112	19	21	21	37	1.94
41769479--41769552	27	2.8	26	81	6	76	17	21	21	39	1.93
41769670--41769877	6	34.2	6	69	18	128	21	15	13	48	1.80
41769670--41769828	31	5.4	31	85	10	199	21	17	13	47	1.82
41769670--41769877	30	7.2	30	80	15	208	21	15	13	48	1.80
41775735--41775843	37	2.9	37	91	0	173	27	32	18	22	1.97
41775888--41776414	48	11.0	48	91	0	856	31	26	6	34	1.83
41784166--41784255	29	3.1	28	82	7	110	28	13	25	32	1.93
41786138--41786163	11	2.4	11	100	0	52	42	38	0	19	1.51
41786265--41786422	39	4.1	39	86	0	208	43	24	3	28	1.72
41786267--41786421	78	2.0	78	88	0	229	42	24	3	29	1.72
41788609--41788776	40	4.2	40	76	3	142	23	26	23	26	2.00
41796618--41796784	40	4.2	40	79	2	158	23	26	23	26	2.00
41796634--41796782	80	1.9	79	83	6	194	22	26	24	26	2.00
41802361--41802459	24	4.1	24	98	0	189	37	28	16	18	1.92
41808322--41808465	40	3.7	38	83	5	146	24	27	21	26	1.99
41808354--41808504	40	3.8	40	83	6	155	23	25	21	29	1.99
41813470--41813616	24	6.1	24	99	0	285	37	28	16	17	1.92
41817311--41817359	16	3.1	15	83	13	55	12	12	2	73	1.18
41817314--41817365	16	3.3	15	82	12	52	15	9	3	71	1.27
41817392--41817465	40	1.9	39	91	8	125	28	12	6	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41821108--41821165	30	1.9	30	89	6	91	20	29	29	20	1.98
41828925--41828986	27	2.3	28	78	10	67	29	12	22	35	1.91
41830897--41831066	93	1.8	93	94	0	304	21	21	29	28	1.98
41830901--41831072	46	3.7	46	78	16	201	21	21	28	28	1.99
41831295--41831332	19	2.0	20	85	15	53	36	0	23	39	1.55
41836608--41836790	79	2.3	81	84	7	232	23	22	28	25	1.99
41836609--41836792	40	4.6	39	82	9	212	23	22	28	25	1.99
41836661--41836825	79	2.1	79	82	6	192	24	20	28	26	1.99
41842952--41843069	27	4.4	27	91	0	191	42	17	13	26	1.87
41845892--41845936	20	2.3	19	82	17	56	11	17	2	68	1.29
41860463--41860645	79	2.3	81	85	7	241	25	27	22	24	2.00
41860442--41860645	40	5.1	40	83	8	247	25	27	22	24	1.99
41868523--41868706	40	4.7	39	84	8	230	26	28	21	23	1.99
41868525--41868704	78	2.3	80	84	6	233	25	28	21	24	1.99
41871218--41871274	27	2.1	27	83	0	69	31	7	21	40	1.80
41883456--41883623	39	4.2	40	81	6	207	25	24	27	22	1.99
41883456--41883623	79	2.1	79	83	4	205	25	24	27	22	1.99
41886520--41886557	11	3.8	10	83	10	51	36	10	28	23	1.88
41886987--41887024	19	2.0	19	89	0	58	26	10	13	50	1.73
41890314--41890403	25	3.6	25	76	5	67	31	18	28	21	1.97
41890345--41890403	25	2.3	26	77	8	68	33	16	32	16	1.92
41895571--41895630	30	2.0	30	96	0	111	46	8	3	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41906512--41906548	19	1.9	19	88	0	56	54	10	5	29	1.57
41908286--41908403	31	3.5	35	87	9	126	21	23	16	38	1.93
41908309--41908403	31	3.1	31	95	0	172	22	22	15	40	1.91
41908595--41908713	24	5.0	24	89	5	170	26	22	21	28	1.99
41908595--41908713	47	2.5	48	89	5	170	26	22	21	28	1.99
41908763--41908823	20	3.0	20	92	0	104	32	21	11	34	1.89
41908866--41908913	25	1.9	25	86	0	69	25	16	25	33	1.96
41910058--41910141	27	3.1	27	89	3	125	21	26	21	30	1.98
41910201--41910251	27	1.9	27	84	11	70	37	11	9	41	1.75
41910290--41910429	54	2.6	54	85	4	192	30	8	22	38	1.84
41910209--41910456	27	9.1	27	78	7	144	32	8	20	38	1.83
41910409--41910690	81	3.5	81	87	5	351	42	7	20	29	1.80
41910407--41910698	27	10.9	27	84	7	319	42	7	21	28	1.80
41910695--41910793	27	3.7	27	81	5	112	30	10	20	39	1.85
41910687--41910791	54	2.0	53	81	9	124	31	9	20	38	1.85
41910704--41910808	27	3.9	27	75	9	72	34	9	18	38	1.83
41913500--41913617	31	3.5	35	87	9	126	21	23	16	38	1.93
41913523--41913617	31	3.1	31	95	0	172	22	22	15	40	1.91
41913809--41913927	24	5.0	24	89	5	170	26	22	21	28	1.99
41913809--41913927	47	2.5	48	89	5	170	26	22	21	28	1.99
41913977--41914037	20	3.0	20	92	0	104	32	21	11	34	1.89
41915284--41915364	27	3.0	27	89	3	119	22	25	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41915429--41915480	27	1.9	27	84	7	70	38	11	9	40	1.74
41915519--41915658	54	2.6	54	85	4	192	30	8	22	38	1.84
41915438--41915685	27	9.1	27	78	7	144	32	8	20	38	1.83
41915610--41915926	54	5.9	54	80	4	235	40	8	21	29	1.83
41915636--41915920	27	10.6	27	86	4	324	41	8	21	28	1.82
41915933--41916000	27	2.5	27	83	4	84	33	10	16	39	1.82
41923681--41923859	27	6.6	27	89	0	259	39	20	9	30	1.85
41923681--41923932	81	3.1	81	82	1	281	38	21	9	30	1.85
41923681--41923967	27	10.6	27	82	3	238	38	21	9	30	1.85
41923952--41924308	27	13.3	27	87	1	493	34	19	21	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318