genome.fa.s2.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  116  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35573644--35574238	190	3.1	190	96	0	1059	33	8	29	29	1.86
35573947--35574069	22	5.3	22	62	11	66	33	9	27	29	1.89
35575937--35575995	26	2.3	25	80	13	66	37	25	10	27	1.88
35576102--35576217	28	4.2	28	84	2	137	20	24	18	36	1.95
35581165--35581330	40	4.2	40	94	2	282	22	22	27	27	1.99
35587836--35587861	13	2.0	13	100	0	52	30	0	7	61	1.24
35589240--35589444	40	5.2	40	94	1	351	22	21	27	27	1.99
35591601--35591675	28	2.7	28	89	8	125	22	13	36	28	1.92
35592802--35592864	31	2.0	31	96	0	117	28	11	25	34	1.90
35595794--35595863	27	2.5	28	95	2	124	28	14	27	30	1.95
35595794--35595875	27	3.0	27	85	8	78	29	15	24	30	1.96
35600694--35600752	29	2.0	29	93	0	100	22	13	27	37	1.91
35602801--35602937	48	2.9	47	75	3	132	29	26	16	27	1.96
35611685--35611736	6	8.5	6	79	12	61	48	17	17	17	1.82
35611667--35611752	31	2.8	31	90	0	136	46	12	19	20	1.83
35612896--35612965	29	2.5	28	78	15	90	32	8	14	44	1.75
35612965--35613124	27	6.0	26	78	5	158	30	11	20	37	1.89
35612965--35613124	54	3.0	54	80	3	180	30	11	20	37	1.89
35612941--35613091	81	1.9	81	86	8	218	29	8	21	40	1.83
35612966--35613124	81	2.0	81	85	7	216	30	11	20	37	1.88
35613123--35613319	27	7.3	27	86	3	236	38	7	24	29	1.83
35619759--35620001	44	5.5	44	86	3	274	29	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35625864--35626067	9	22.1	9	71	17	143	31	0	21	46	1.58
35625897--35626005	34	3.1	39	72	24	123	29	0	22	46	1.58
35625958--35626040	16	4.9	16	74	7	58	32	0	20	46	1.51
35626003--35626067	25	2.4	27	80	12	80	35	0	18	46	1.50
35626258--35626973	241	3.0	241	97	0	1351	32	15	17	34	1.91
35626939--35627000	30	2.1	30	100	0	124	33	9	20	35	1.86
35629957--35630179	40	5.6	40	86	7	278	23	21	28	26	1.99
35636411--35636634	40	5.6	40	84	7	269	23	21	28	26	1.99
35636410--35636657	119	2.1	119	82	7	290	24	21	27	26	1.99
35641693--35641738	21	2.2	21	88	7	67	30	2	19	47	1.61
35641985--35642069	40	2.1	40	85	8	111	27	23	21	28	1.99
35646346--35646547	40	5.1	40	75	9	139	24	24	27	24	2.00
35646345--35646496	78	1.9	80	84	5	202	25	23	26	24	2.00
35655019--35655172	27	5.5	27	82	4	173	28	14	25	31	1.95
35655069--35655172	55	1.9	55	100	0	208	26	13	24	35	1.92
35659166--35659325	24	6.6	24	66	13	85	32	29	13	25	1.93
35659776--35659816	2	20.5	2	94	0	73	48	2	0	48	1.14
35667960--35668110	40	3.8	40	77	6	137	25	22	28	23	1.99
35669802--35669986	24	7.6	24	74	8	151	31	29	14	25	1.94
35669802--35669988	48	3.9	47	74	8	171	31	29	13	25	1.94
35673394--35673576	24	7.6	24	94	0	285	34	25	19	21	1.96
35673372--35673576	48	4.3	47	86	4	218	33	24	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35674022--35674052	2	15.5	2	100	0	62	51	0	0	48	1.00
35681118--35681300	24	7.6	24	94	0	285	34	25	19	21	1.96
35681096--35681300	48	4.3	47	86	4	218	33	24	19	22	1.97
35681750--35681777	2	14.0	2	100	0	56	50	0	0	50	1.00
35683209--35683260	25	2.2	23	83	13	61	32	0	25	42	1.55
35689965--35690080	43	2.8	41	78	11	110	24	20	27	27	1.99
35696229--35696280	27	2.0	26	84	3	68	17	26	21	34	1.95
35698132--35698165	17	2.0	17	100	0	68	35	0	23	41	1.55
35703118--35703269	43	3.5	43	82	5	128	32	23	15	28	1.95
35703172--35703271	43	2.3	43	91	3	157	35	24	15	26	1.94
35707499--35707610	27	4.1	27	82	7	129	16	24	22	37	1.93
35707503--35707609	54	2.0	54	87	3	153	16	24	20	38	1.93
35715520--35715736	46	4.7	46	95	0	398	36	14	24	24	1.93
35717047--35717310	93	2.8	93	91	0	420	30	29	18	22	1.97
35717092--35717260	47	3.6	47	74	10	175	29	28	18	23	1.97
35717047--35717306	46	5.6	46	72	12	199	30	28	18	22	1.97
35718219--35718309	46	2.0	46	95	0	164	31	26	17	24	1.97
35719137--35719233	45	2.1	46	81	5	108	44	12	23	19	1.85
35720681--35720787	43	2.5	43	87	1	153	36	23	15	24	1.94
35732750--35732867	58	2.0	58	98	0	227	33	12	21	33	1.91
35733311--35733335	12	2.1	12	100	0	50	32	24	24	20	1.98
35734035--35734059	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35734501--35734560	19	3.0	20	73	11	61	63	0	3	33	1.11
35734496--35734564	19	3.6	18	70	14	50	68	0	2	28	1.04
35734853--35734899	9	5.3	9	82	10	53	29	4	0	65	1.11
35734899--35735109	87	2.3	87	78	11	212	37	8	17	37	1.79
35735573--35735612	19	2.1	19	90	0	62	50	5	0	45	1.23
35735580--35735622	19	2.3	19	84	8	52	51	9	0	39	1.34
35736355--35736396	17	2.4	18	80	11	61	21	4	0	73	1.01
35738542--35738803	48	5.5	48	82	5	289	18	18	28	33	1.95
35741389--35741441	26	2.0	26	100	0	106	50	18	15	15	1.77
35745559--35745821	48	5.5	48	80	6	255	19	18	27	34	1.95
35747473--35747505	16	2.1	16	94	0	57	39	12	9	39	1.74
35751085--35751133	25	2.0	25	83	0	62	34	24	14	26	1.94
35751179--35751234	11	5.5	11	71	16	57	35	12	19	32	1.89
35751168--35751234	20	3.3	20	93	0	116	34	11	20	32	1.90
35762440--35762608	46	3.7	46	69	9	146	21	17	27	33	1.96
35765578--35765616	15	2.6	15	83	0	60	10	12	17	58	1.61
35765612--35765660	15	3.3	15	71	5	55	14	18	12	55	1.69
35765595--35765675	29	2.8	29	96	1	144	12	17	14	55	1.69
35768133--35768186	27	2.0	27	85	0	72	38	7	14	38	1.75
35768433--35768677	49	4.9	50	77	4	208	26	17	25	29	1.98
35775470--35775548	42	1.9	40	85	14	108	20	18	40	20	1.92
35780904--35780959	27	2.1	27	82	0	67	21	21	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35782293--35782350	30	1.9	30	85	0	80	41	6	20	31	1.79
35788539--35788741	39	5.2	40	89	0	214	23	31	20	24	1.98
35788569--35788741	39	4.4	39	92	0	274	24	31	19	24	1.98
35794662--35794864	39	5.2	40	87	0	196	24	31	20	24	1.98
35794692--35794864	39	4.4	39	89	0	256	24	31	19	24	1.98
35799980--35800048	6	11.3	6	73	14	61	50	13	15	20	1.77
35800167--35800226	27	2.3	26	85	8	77	36	18	21	23	1.95
35800265--35800316	27	2.0	26	84	3	68	34	21	26	17	1.95
35800194--35800335	67	2.1	68	84	5	178	33	21	26	18	1.96
35800561--35800809	27	9.3	27	86	0	302	24	19	18	37	1.94
35800586--35800840	81	3.1	82	84	3	232	25	17	18	37	1.93
35800764--35801134	27	13.7	27	80	1	323	30	8	21	39	1.82
35800794--35801134	54	6.3	54	83	1	360	31	7	21	39	1.81
35808458--35808736	30	9.2	30	75	7	244	25	25	11	37	1.90
35808445--35808687	60	4.0	60	82	2	274	23	25	12	38	1.90
35808521--35808736	90	2.4	91	89	5	323	25	25	11	37	1.90
35808674--35808736	31	2.0	31	87	0	90	30	22	11	36	1.89
35811534--35811656	46	2.7	46	93	0	210	22	21	26	30	1.99
35818489--35818526	18	2.1	18	85	14	51	55	15	0	28	1.41
35821974--35822088	27	4.3	26	86	5	131	34	20	22	21	1.97
35821998--35822087	28	3.3	28	89	4	139	35	22	22	20	1.96
35824373--35824487	43	2.7	42	80	7	135	31	24	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35826536--35826591	29	1.9	28	82	7	67	39	7	19	33	1.79
35830293--35830585	27	10.9	27	83	6	294	38	20	9	30	1.85
35830293--35830578	81	3.5	80	85	2	358	39	20	9	30	1.85
35830617--35830812	27	7.3	27	82	1	214	36	20	19	23	1.95
35831438--35831489	27	2.0	26	84	3	68	17	26	21	34	1.95
35833646--35833919	27	10.2	27	85	3	313	37	21	9	31	1.85
35833646--35833919	53	5.1	54	85	3	322	37	21	9	31	1.85
35833646--35833919	80	3.4	81	85	4	340	37	21	9	31	1.85
35833646--35833919	107	2.6	106	84	3	311	37	21	9	31	1.85
35833646--35833954	107	2.9	107	81	4	268	37	22	9	31	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318