genome.fa.s2.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  102  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31128845--31129376	27	19.7	27	85	4	617	28	21	8	41	1.82
31130701--31130772	11	7.1	11	70	17	66	36	12	19	31	1.89
31130696--31130768	9	7.4	9	71	17	56	34	9	20	35	1.85
31130690--31130772	20	4.2	20	95	0	148	34	12	20	32	1.89
31130827--31130946	23	5.1	23	88	4	186	29	22	20	27	1.99
31130826--31130968	24	6.0	23	85	7	189	29	22	21	26	1.99
31130825--31130968	47	3.0	47	89	4	218	29	22	21	26	1.99
31131161--31131224	31	2.1	31	90	0	101	35	15	23	25	1.94
31132650--31132719	25	2.8	24	84	4	86	24	25	22	27	2.00
31139107--31139144	14	2.9	13	81	11	51	57	10	13	18	1.63
31147458--31147495	14	2.9	13	81	11	51	57	10	13	18	1.63
31148288--31148471	54	3.4	55	73	5	160	23	23	17	35	1.95
31160171--31160305	20	6.8	19	88	2	135	13	23	28	34	1.92
31160171--31160300	40	3.3	40	89	3	165	12	23	28	35	1.91
31160171--31160306	60	2.3	59	85	1	173	13	24	27	34	1.93
31164227--31164402	46	3.8	46	76	7	185	30	29	19	20	1.97
31164234--31164405	93	1.8	93	92	0	290	29	29	20	20	1.98
31169301--31169346	24	2.0	23	82	4	56	28	19	10	41	1.85
31170060--31172392	777	3.0	777	98	0	4515	32	18	11	38	1.86
31172862--31173039	46	3.8	46	77	7	198	28	28	21	21	1.99
31172869--31173040	93	1.8	93	92	0	290	27	28	21	22	1.99
31176092--31176163	16	4.5	16	85	3	92	40	5	26	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31176093--31176163	32	2.2	32	87	0	106	40	5	25	28	1.78
31185578--31185653	23	3.3	23	78	14	86	25	22	18	34	1.96
31190856--31190887	16	2.0	16	93	0	55	65	0	6	28	1.16
31193311--31193482	67	2.6	66	81	7	170	31	16	29	22	1.96
31193335--31193518	67	2.8	64	78	8	203	28	16	30	23	1.96
31202896--31203063	84	2.0	83	95	1	300	37	11	19	32	1.87
31207798--31207847	19	2.6	20	78	18	61	70	4	6	20	1.25
31220006--31220133	48	2.7	48	79	2	132	28	27	15	28	1.96
31228151--31228196	24	1.9	25	86	8	69	28	17	8	45	1.78
31229281--31229341	30	2.0	30	83	0	77	31	22	8	37	1.84
31231758--31231942	79	2.3	80	82	7	207	23	28	23	24	2.00
31231758--31231942	40	4.7	40	78	6	180	23	28	23	24	2.00
31234955--31235006	22	2.4	22	96	0	95	25	32	30	11	1.91
31236484--31236622	48	2.9	48	84	0	170	28	28	17	25	1.98
31236336--31236633	48	6.5	48	72	11	153	29	25	17	27	1.97
31239281--31239436	43	3.7	42	77	5	154	24	19	25	31	1.98
31245458--31245840	136	2.8	138	89	2	583	40	8	5	44	1.59
31246143--31246186	19	2.4	19	85	7	56	50	0	9	40	1.34
31250651--31250869	71	3.1	71	63	19	186	48	7	8	36	1.61
31250722--31250938	69	3.1	69	63	19	178	47	7	6	38	1.59
31250417--31251381	138	7.1	138	85	6	1160	45	6	8	39	1.59
31250824--31251073	125	2.0	125	93	1	430	48	6	8	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31250417--31251381	265	3.6	268	85	7	1137	45	6	8	39	1.59
31260682--31261198	137	3.8	138	89	2	755	40	8	5	45	1.58
31264369--31264527	43	3.7	43	76	7	153	30	25	20	23	1.99
31264369--31264551	44	4.2	44	73	12	132	31	25	19	24	1.98
31266282--31266408	47	2.7	47	84	3	150	29	27	18	24	1.98
31266639--31267058	209	2.0	209	100	0	840	36	20	8	34	1.83
31268222--31268374	39	3.9	39	93	0	234	26	28	20	24	1.99
31276453--31276677	78	2.9	78	81	6	210	28	28	20	21	1.98
31276533--31276685	39	3.9	39	92	0	234	27	30	20	22	1.98
31288257--31288406	40	3.8	39	75	7	117	23	26	23	26	2.00
31294185--31294295	25	4.5	25	78	1	71	30	22	19	27	1.98
31295988--31296046	29	2.0	29	100	0	118	30	23	10	35	1.88
31298513--31298573	29	2.1	28	93	3	104	32	13	11	42	1.79
31300245--31300428	40	4.6	39	75	6	138	26	23	27	22	2.00
31300285--31300473	80	2.4	81	77	4	186	23	24	29	22	1.99
31308362--31308545	40	4.6	39	75	6	138	26	23	27	22	2.00
31308402--31308590	80	2.4	81	77	4	186	23	24	29	22	1.99
31314885--31314970	42	2.0	42	84	0	109	31	16	23	29	1.96
31320744--31320949	40	5.2	40	93	1	344	27	26	22	23	2.00
31328361--31328530	92	1.9	91	93	1	295	28	30	21	20	1.98
31328354--31328527	46	3.8	46	79	12	196	29	29	20	20	1.98
31328362--31328546	46	4.0	46	72	18	127	28	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31332524--31332690	40	4.2	40	79	6	169	26	22	26	24	2.00
31340500--31340667	40	4.2	40	77	6	162	26	22	26	25	2.00
31342733--31342890	43	3.7	42	69	13	126	32	24	19	23	1.98
31351469--31351496	14	2.0	14	100	0	56	64	7	7	21	1.43
31368155--31368295	68	2.1	68	95	0	255	33	19	12	34	1.89
31385538--31385633	50	1.9	50	97	0	183	28	26	11	34	1.91
31385713--31385840	43	3.0	44	80	7	156	33	25	13	27	1.93
31387914--31388011	43	2.3	43	92	1	162	28	23	20	27	1.99
31388426--31388475	21	2.4	21	86	0	64	4	46	14	36	1.63
31392123--31392262	31	4.5	31	94	1	246	27	26	18	27	1.98
31392089--31392262	62	2.9	61	88	7	250	26	25	18	28	1.98
31392286--31392377	42	2.2	42	100	0	184	33	20	14	31	1.92
31392525--31392594	25	2.8	25	86	4	97	25	24	25	24	2.00
31393408--31393470	27	2.3	27	83	5	83	20	25	19	34	1.96
31393528--31393684	27	5.7	27	81	10	124	30	7	19	42	1.78
31393598--31393736	54	2.6	53	80	3	161	28	7	21	42	1.79
31393586--31393736	81	1.9	80	85	1	212	28	7	21	42	1.80
31393598--31393736	27	5.2	26	82	4	143	28	7	21	42	1.79
31393586--31393765	81	2.2	81	81	4	195	28	10	21	40	1.85
31393772--31393859	27	3.3	27	77	0	77	39	9	22	28	1.85
31396336--31396558	121	1.8	121	83	5	299	31	31	16	21	1.95
31397389--31397679	44	6.8	44	77	8	233	28	24	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31397478--31397716	44	5.5	44	82	6	254	28	22	20	28	1.98
31397472--31397716	87	2.8	86	85	4	296	27	22	21	28	1.99
31398014--31398057	20	2.1	21	91	4	72	2	56	15	25	1.51
31398614--31398650	18	2.1	18	90	5	58	51	0	8	40	1.32
31404202--31404241	21	1.9	21	94	0	71	47	12	10	30	1.74
31409374--31409404	15	2.1	15	93	0	53	32	9	0	58	1.31
31409773--31409824	25	2.1	25	96	0	95	42	21	7	28	1.80
31410232--31410426	41	4.8	41	89	5	295	22	24	21	32	1.98
31410407--31410490	41	2.0	41	84	8	109	16	20	19	44	1.87
31415263--31415460	71	2.8	70	92	3	294	33	17	28	20	1.95
31415329--31415446	41	3.1	41	60	28	98	32	17	28	21	1.96
31415297--31415460	71	2.3	71	100	0	328	35	17	28	18	1.94
31420261--31420474	50	4.3	50	79	3	250	28	26	19	25	1.98
31420310--31420491	101	1.8	101	83	0	247	30	24	18	26	1.98
31420835--31420881	19	2.3	20	82	10	60	48	14	0	36	1.44
31434958--31435177	49	4.6	49	73	10	197	24	29	20	25	1.99
31435011--31435185	93	1.9	92	82	8	221	25	30	20	24	1.98
31439505--31439539	18	1.9	18	88	0	52	48	22	2	25	1.64
31440552--31440576	2	12.5	2	100	0	50	52	0	0	48	1.00
31440576--31440609	12	2.8	12	90	0	59	41	50	8	0	1.34
31442592--31442660	30	2.3	30	87	2	95	23	18	10	47	1.79
31443320--31443705	205	1.9	203	90	2	621	28	13	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31448029--31448110	26	3.2	26	92	0	146	32	7	24	35	1.83
31454963--31455070	26	4.2	26	93	0	189	32	7	24	36	1.83
31460520--31460631	40	2.8	40	84	2	136	22	27	23	26	1.99
31460520--31460661	40	3.5	40	80	5	128	24	26	21	27	1.99
31465168--31465224	30	1.9	30	92	0	96	31	10	26	31	1.90
31465206--31465240	16	2.2	16	94	0	61	34	11	14	40	1.82
31465579--31465701	47	2.6	45	83	11	151	27	18	30	22	1.97
31465584--31465943	46	7.6	46	71	16	172	27	19	29	23	1.98
31470765--31470834	27	2.5	28	90	4	106	34	22	24	18	1.96
31470960--31471024	28	2.3	28	91	0	103	30	9	27	32	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318