genome.fa.s2.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  166  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51363528--51363591	31	2.1	31	100	0	128	40	9	9	40	1.70
51363812--51363870	29	2.0	30	86	3	84	33	5	11	49	1.62
51365786--51365916	29	4.5	29	78	5	122	25	17	32	25	1.97
51373844--51373974	29	4.5	29	78	5	122	25	17	32	25	1.97
51381395--51381734	49	7.0	49	93	1	558	32	8	28	29	1.87
51381799--51381881	37	2.2	37	100	0	166	20	21	32	25	1.98
51383771--51383962	40	4.8	40	96	0	339	26	20	27	26	1.99
51384705--51384806	40	2.5	41	82	7	127	25	23	27	23	2.00
51387628--51387870	49	5.0	49	92	0	380	32	7	29	30	1.86
51387935--51388021	37	2.3	37	96	2	156	21	20	31	26	1.98
51408247--51408378	46	2.9	46	93	0	219	25	31	9	34	1.87
51408402--51408548	47	3.1	47	97	0	267	25	28	10	35	1.90
51408452--51408523	22	3.1	22	64	24	58	23	29	13	33	1.93
51421110--51421277	40	4.2	40	80	12	175	23	22	27	26	1.99
51421110--51421277	80	2.1	79	86	4	230	23	22	27	26	1.99
51429112--51429279	40	4.2	40	80	12	175	23	22	27	26	1.99
51429112--51429279	80	2.1	79	86	4	230	23	22	27	26	1.99
51436596--51436713	41	3.1	41	60	28	98	32	17	28	21	1.96
51436564--51436727	71	2.3	71	100	0	328	35	17	28	18	1.94
51438129--51438164	18	2.1	18	89	5	56	33	25	0	41	1.55
51453345--51453475	58	2.3	57	80	12	135	25	25	16	32	1.96
51453401--51453475	29	2.6	29	100	0	150	24	28	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51455995--51456146	39	3.9	39	92	0	250	26	24	21	26	1.99
51463765--51463792	2	14.0	2	100	0	56	50	0	0	50	1.00
51464163--51464320	39	4.1	39	89	0	244	26	24	21	27	1.99
51466128--51466236	24	4.6	23	85	7	137	33	23	17	24	1.96
51466128--51466236	48	2.3	48	91	3	175	33	23	17	24	1.96
51468616--51468745	40	3.2	40	83	4	165	23	24	28	23	2.00
51477200--51477308	24	4.6	23	85	7	137	33	23	17	24	1.96
51477200--51477308	48	2.3	48	91	3	175	33	23	17	24	1.96
51480798--51480918	39	3.1	39	89	0	188	23	28	24	22	1.99
51481638--51481804	40	4.2	40	82	2	185	25	27	21	25	1.99
51481638--51481804	80	2.1	79	83	7	205	25	27	21	25	1.99
51482630--51482675	17	2.5	19	74	22	53	34	23	17	23	1.96
51488864--51489030	40	4.2	40	82	2	185	25	27	21	25	1.99
51488864--51489030	80	2.1	79	83	7	205	25	27	21	25	1.99
51489856--51489901	17	2.5	19	74	22	53	34	23	17	23	1.96
51497143--51497262	39	3.1	39	93	1	206	23	30	24	21	1.99
51499753--51499824	29	2.5	29	97	0	135	26	30	13	29	1.94
51504387--51504570	79	2.3	81	82	8	200	23	27	23	24	2.00
51504387--51504570	40	4.7	40	78	7	180	23	27	23	24	2.00
51509301--51509485	79	2.3	81	83	7	227	23	27	24	24	2.00
51509294--51509485	40	4.8	39	76	8	163	23	28	23	24	2.00
51519387--51519483	28	3.5	28	95	1	169	44	26	9	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51520619--51520743	40	3.2	39	77	5	126	24	28	21	25	1.99
51524080--51524195	40	2.9	40	87	5	180	25	22	27	25	2.00
51541302--51541427	43	3.0	43	79	5	148	25	14	24	35	1.93
51544390--51544428	21	2.0	21	85	10	55	53	10	10	25	1.66
51545275--51545392	31	3.5	35	89	9	135	22	23	16	37	1.94
51545298--51545392	31	3.1	31	98	0	181	23	22	15	38	1.92
51545584--51545702	24	5.0	24	89	5	170	26	22	21	28	1.99
51545584--51545702	47	2.5	48	89	5	170	26	22	21	28	1.99
51545753--51545812	20	3.0	20	90	0	102	33	20	11	35	1.88
51545855--51545902	25	1.9	25	86	0	69	25	16	25	33	1.96
51546173--51546242	11	6.7	11	71	12	67	31	20	14	34	1.92
51546184--51546247	20	3.2	20	88	0	101	34	20	12	32	1.90
51546170--51546231	31	2.1	30	87	6	90	33	19	12	33	1.90
51546806--51547151	27	12.8	27	88	2	390	41	8	22	28	1.82
51547075--51547379	27	11.3	27	85	2	242	32	8	20	37	1.84
51547229--51547396	27	6.3	26	87	2	174	31	7	19	42	1.78
51548480--51548576	49	2.0	49	100	0	194	39	12	4	44	1.61
51551211--51551378	40	4.2	40	83	4	187	23	26	23	26	2.00
51559185--51559342	40	4.0	40	85	1	201	24	27	23	25	2.00
51559185--51559338	80	1.9	80	86	5	222	24	27	24	24	2.00
51564471--51564712	24	10.1	24	96	0	414	20	18	25	36	1.95
51567940--51568106	40	4.2	40	81	2	176	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51567956--51568106	80	1.9	79	83	6	198	23	27	22	25	2.00
51568932--51568977	17	2.5	19	74	22	53	34	23	17	23	1.96
51575647--51575882	119	2.0	120	93	0	402	20	18	25	35	1.95
51575647--51575888	24	10.1	24	94	0	396	20	18	25	35	1.95
51596338--51596407	27	2.6	27	95	2	122	30	27	14	28	1.95
51600324--51600388	22	3.0	22	80	8	78	30	23	26	20	1.98
51600888--51601223	27	12.4	27	82	3	309	30	9	20	39	1.85
51610270--51610436	40	4.2	40	79	2	158	23	27	22	26	2.00
51615849--51616022	49	3.6	47	76	16	169	27	19	27	25	1.99
51615802--51616022	96	2.3	93	84	8	261	26	19	28	25	1.99
51617187--51617226	21	2.0	20	95	5	71	15	40	25	20	1.90
51623481--51623841	46	7.6	46	76	11	215	27	19	28	23	1.98
51625680--51625861	39	4.6	39	90	0	247	21	31	23	23	1.98
51625710--51625861	39	3.9	39	93	0	250	22	31	22	23	1.98
51633683--51633863	39	4.6	39	88	1	229	22	30	22	24	1.99
51633713--51633863	39	3.9	39	91	1	232	22	31	21	24	1.99
51647854--51647878	7	3.6	7	100	0	50	28	0	56	16	1.41
51648989--51649160	84	2.0	87	96	3	323	43	6	10	38	1.66
51650025--51650204	43	4.2	43	69	11	143	25	16	25	32	1.96
51656987--51657072	43	2.0	43	95	0	154	29	9	30	31	1.88
51658182--51658240	29	2.0	28	84	12	75	33	8	27	30	1.86
51661447--51661592	37	3.9	37	92	0	229	25	32	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51661797--51662366	47	12.1	47	89	1	847	27	28	11	32	1.92
51661820--51662367	141	3.9	141	97	0	1015	27	28	12	32	1.92
51661982--51662057	23	3.2	25	63	22	63	23	31	14	30	1.94
51667215--51667298	26	3.2	26	96	0	150	36	25	4	33	1.77
51672961--51673096	26	5.2	26	94	0	236	36	25	5	33	1.78
51673428--51673666	40	6.0	40	95	0	390	23	21	26	28	1.99
51681392--51681557	40	4.2	40	92	2	246	22	21	27	28	1.99
51685193--51685277	44	1.9	44	83	4	109	38	15	20	25	1.91
51685371--51685492	47	2.6	47	94	0	208	34	13	26	25	1.93
51685465--51685678	54	4.0	54	81	4	216	36	16	24	22	1.94
51685479--51685667	55	3.5	54	82	5	229	35	17	24	21	1.95
51692641--51692798	45	3.5	45	80	3	174	39	17	20	22	1.92
51692641--51692808	90	1.9	90	81	2	203	38	17	20	22	1.93
51699675--51699742	24	2.8	24	80	8	68	47	10	4	38	1.58
51702506--51702587	41	2.0	41	97	0	155	34	23	12	30	1.91
51709109--51709311	40	5.1	40	84	3	250	26	27	22	23	2.00
51709130--51709310	79	2.3	80	86	2	240	27	27	22	23	1.99
51713237--51713350	50	2.3	50	95	0	210	25	9	20	44	1.81
51715615--51715661	24	2.0	24	91	0	76	40	21	4	34	1.73
51721170--51721322	40	3.8	40	78	9	143	22	23	28	25	2.00
51722180--51722326	40	3.7	40	83	1	143	22	27	22	27	1.99
51728411--51728542	29	4.6	29	82	9	137	26	26	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51733166--51733328	40	4.2	39	80	10	174	26	29	20	23	1.99
51738554--51738623	27	2.6	27	93	2	113	30	28	14	27	1.95
51744922--51745105	39	4.7	39	85	0	224	25	22	29	22	1.99
51747808--51747835	2	14.0	2	100	0	56	50	0	0	50	1.00
51748543--51748651	40	2.7	41	80	8	134	23	24	25	25	2.00
51756808--51756874	34	2.0	34	100	0	134	25	14	26	32	1.95
51756858--51756971	26	4.5	25	70	17	92	21	18	28	32	1.96
51760987--51761050	22	2.9	22	78	2	65	35	10	21	31	1.88
51765162--51765205	21	2.2	20	83	4	52	36	15	15	31	1.90
51767002--51767112	47	2.4	47	84	6	154	25	16	23	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318