genome.fa.s2.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  220  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69219286--69219478	56	3.4	56	87	0	287	27	17	23	31	1.96
69219286--69219507	56	4.0	55	80	8	227	27	17	24	31	1.97
69221172--69221196	13	1.9	13	100	0	50	48	0	8	44	1.32
69222966--69222995	2	15.0	2	100	0	60	0	0	50	50	1.00
69226943--69226985	12	3.6	12	77	0	50	72	0	2	25	0.97
69226943--69226993	24	2.2	22	86	6	66	70	0	1	27	0.98
69228299--69228338	20	2.0	20	85	0	53	40	0	2	57	1.12
69228766--69228800	2	18.0	2	88	5	54	54	0	0	45	0.99
69229257--69229319	28	2.2	28	91	0	99	31	30	6	31	1.83
69234571--69234633	28	2.2	28	88	0	90	33	30	4	31	1.78
69237640--69237858	79	2.7	79	82	8	257	26	27	21	24	1.99
69237654--69237858	40	5.1	41	83	8	237	25	28	21	23	1.99
69238569--69238596	2	14.0	2	100	0	56	50	0	0	50	1.00
69248126--69248268	40	3.6	40	77	5	119	25	27	23	23	2.00
69253917--69254119	40	5.1	41	82	9	219	25	27	22	24	2.00
69254828--69254857	2	15.0	2	100	0	60	50	0	0	50	1.00
69257018--69257045	5	5.6	5	100	0	56	82	0	0	17	0.68
69257538--69257589	23	2.3	23	96	3	97	36	17	3	42	1.67
69257778--69257805	2	14.0	2	100	0	56	50	0	0	50	1.00
69260026--69260073	20	2.4	20	96	0	87	12	22	45	18	1.83
69262465--69262521	25	2.3	25	82	11	64	43	21	12	22	1.85
69262474--69262580	25	4.3	25	79	0	106	39	27	14	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69262638--69262708	25	2.8	25	89	0	97	33	25	18	22	1.96
69269807--69269936	40	3.2	40	81	4	156	23	25	28	23	1.99
69284260--69284429	40	4.2	40	85	3	225	21	28	24	25	1.99
69292357--69292526	40	4.2	40	85	3	225	21	28	24	25	1.99
69294357--69294525	47	3.6	47	93	0	284	38	13	21	26	1.90
69294504--69294873	55	7.0	54	73	10	282	35	15	24	25	1.94
69294511--69294906	109	3.7	107	77	10	418	35	16	23	24	1.95
69294620--69294803	100	1.8	100	81	4	228	35	15	22	26	1.94
69294451--69294897	209	2.1	209	92	0	743	35	15	23	25	1.94
69297902--69297947	21	2.2	21	88	0	65	30	23	30	15	1.95
69299118--69299292	49	3.6	50	74	13	152	27	29	15	28	1.96
69299263--69299393	52	2.7	50	77	12	130	22	26	20	29	1.99
69302011--69302112	41	2.4	41	80	9	116	28	24	12	34	1.92
69304650--69304815	40	4.2	40	82	3	176	25	27	21	25	1.99
69304650--69304815	80	2.1	78	82	8	194	25	27	21	25	1.99
69306586--69306795	40	5.2	40	87	2	305	25	24	28	21	1.99
69314152--69314319	40	4.2	40	79	1	158	22	27	23	26	2.00
69314168--69314317	80	1.9	80	84	5	205	21	27	24	26	1.99
69321041--69321225	79	2.3	81	85	8	245	24	22	27	25	2.00
69321042--69321225	40	4.6	39	79	11	205	24	22	27	25	2.00
69321042--69321258	79	2.7	79	80	10	205	25	22	27	24	2.00
69328878--69328933	27	2.1	27	96	0	103	23	17	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69330054--69330177	63	2.0	63	93	0	212	35	18	20	25	1.95
69339715--69339760	22	2.1	22	100	0	92	41	8	17	32	1.80
69342778--69342808	2	15.5	2	100	0	62	51	0	0	48	1.00
69343615--69343660	23	2.0	23	91	0	74	28	28	19	23	1.98
69345034--69345075	20	2.2	19	83	12	50	61	0	19	19	1.34
69346805--69346832	11	2.5	11	100	0	56	42	10	10	35	1.74
69348052--69348081	16	1.9	16	93	6	53	30	0	20	50	1.49
69357505--69357662	43	3.7	43	76	6	133	25	20	25	27	1.99
69357504--69357659	85	1.8	85	82	5	199	25	20	26	28	1.99
69359522--69359705	40	4.6	39	75	6	138	26	23	27	22	2.00
69359562--69359750	80	2.4	81	77	4	186	23	24	29	22	1.99
69367637--69367820	40	4.6	39	75	6	138	26	23	27	22	2.00
69367677--69367865	80	2.4	81	77	4	186	23	24	29	22	1.99
69370580--69370658	7	11.3	7	97	0	149	13	1	43	41	1.53
69380742--69381009	49	5.5	49	94	1	450	33	9	28	29	1.88
69380740--69381009	96	2.8	96	92	2	432	32	9	28	29	1.88
69380741--69381009	145	1.9	145	94	0	475	33	9	28	28	1.88
69381058--69381144	37	2.3	36	88	5	120	21	17	32	28	1.96
69384733--69384773	2	20.5	2	100	0	82	48	0	0	51	1.00
69387306--69387359	26	2.1	27	86	6	76	24	24	7	44	1.79
69390973--69391002	13	2.3	13	94	0	51	46	0	20	33	1.51
69400196--69400305	40	2.8	40	85	0	148	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69400196--69400345	40	3.8	39	80	7	133	26	22	26	24	2.00
69404293--69404362	27	2.5	28	93	2	115	30	28	14	27	1.95
69408064--69408418	172	2.1	172	99	0	701	45	12	12	29	1.79
69409981--69410040	28	2.1	29	81	3	68	40	33	6	20	1.78
69412388--69412814	42	10.2	42	85	0	512	35	23	18	21	1.95
69419445--69419645	40	5.0	40	88	2	262	27	29	21	21	1.98
69432258--69432441	40	4.6	40	83	2	190	27	22	27	23	1.99
69432300--69432486	80	2.3	80	79	3	189	23	22	29	23	1.99
69437163--69437227	22	3.0	22	80	8	69	27	24	27	20	1.99
69437372--69437491	41	2.9	41	83	3	170	28	27	20	23	1.99
69437749--69438061	27	11.7	27	74	8	147	30	9	19	41	1.83
69437739--69438044	54	5.8	52	76	7	181	29	8	19	41	1.82
69438053--69438133	27	3.0	27	79	0	90	25	20	18	34	1.96
69441464--69441948	47	10.3	47	93	0	765	32	9	29	27	1.89
69442066--69442148	37	2.2	37	89	0	121	22	22	33	20	1.97
69449997--69450256	127	2.0	128	93	0	441	35	13	14	37	1.85
69455121--69455175	11	5.5	11	71	20	57	36	10	18	34	1.86
69455110--69455175	20	3.3	20	91	8	109	36	10	18	34	1.85
69455225--69455322	25	3.8	26	91	2	146	27	22	22	27	1.99
69458208--69458251	14	2.9	15	86	6	54	11	15	15	56	1.66
69460900--69461040	50	2.8	50	86	4	187	30	17	29	21	1.97
69468857--69468904	3	16.0	3	100	0	96	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69470684--69470726	21	2.0	21	86	9	59	76	2	16	4	1.05
69473235--69473276	21	2.0	21	86	9	59	9	0	50	40	1.35
69474070--69474396	165	2.0	165	88	0	492	33	29	14	22	1.93
69480541--69480566	10	2.6	10	100	0	52	57	11	23	7	1.59
69497406--69497452	14	3.5	14	71	11	53	25	12	6	55	1.61
69497675--69497716	13	3.2	13	83	12	50	45	2	0	52	1.13
69499605--69499650	23	2.0	23	100	0	92	34	4	17	43	1.69
69506625--69506974	47	7.3	47	89	3	493	28	30	8	32	1.87
69506625--69506976	49	7.3	49	89	3	495	28	30	8	32	1.87
69506625--69506976	96	3.7	96	90	2	519	28	30	8	32	1.87
69512510--69512620	55	2.0	55	100	0	222	45	20	10	23	1.83
69512684--69512934	40	6.2	41	81	4	235	32	12	29	25	1.92
69512712--69512909	81	2.5	80	86	0	261	33	12	29	24	1.92
69512802--69512870	20	3.5	20	64	7	59	26	11	34	27	1.91
69512712--69512934	81	2.8	81	86	0	250	34	12	29	24	1.91
69521858--69521939	27	3.0	27	77	8	78	26	14	17	41	1.88
69523024--69523082	25	2.4	25	82	0	73	22	20	35	22	1.96
69523295--69523357	33	2.0	31	81	12	74	34	3	15	46	1.62
69530943--69531579	27	23.6	27	84	3	764	28	22	8	40	1.84
69532909--69532965	9	5.9	9	73	15	51	35	8	21	35	1.84
69532907--69532977	20	3.5	20	94	0	124	35	11	21	32	1.89
69532918--69532972	11	5.4	11	70	16	55	36	12	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69533022--69533234	24	9.0	24	88	5	301	28	22	21	28	1.99
69533023--69533234	47	4.5	47	91	4	304	28	21	21	28	1.99
69533428--69533491	31	2.1	31	90	0	101	35	15	23	25	1.94
69534428--69534482	26	2.1	26	100	0	110	30	10	20	38	1.87
69539732--69539971	49	4.9	49	96	0	444	32	8	29	29	1.86
69540058--69540148	37	2.4	37	96	1	164	23	18	32	25	1.97
69541877--69541924	24	2.0	24	100	0	96	33	8	29	29	1.86
69543470--69543583	28	4.0	29	83	8	128	28	27	16	28	1.97
69550881--69550914	18	1.9	18	88	5	52	41	11	17	29	1.85
69550915--69550967	26	2.0	26	100	0	106	18	28	26	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318