genome.fa.s2.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  151  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46472725--46472903	40	4.4	40	84	2	207	26	23	26	22	2.00
46480779--46480956	40	4.5	39	84	5	205	26	24	26	22	2.00
46480813--46480982	80	2.1	80	80	3	182	28	24	25	21	1.99
46483610--46483785	46	3.8	45	76	11	178	21	21	28	28	1.98
46483606--46483778	93	1.9	93	90	2	276	21	21	29	27	1.98
46485289--46485319	16	1.9	16	93	0	53	35	22	0	41	1.54
46485286--46485325	20	2.0	20	85	0	53	37	22	0	40	1.54
46486763--46486852	40	2.2	40	90	0	144	27	26	22	23	1.99
46488541--46488682	40	3.5	40	83	1	124	27	23	26	22	1.99
46488580--46488708	40	3.2	39	84	6	152	24	22	27	25	2.00
46490068--46490177	40	2.8	40	86	5	134	27	25	22	24	2.00
46492229--46492436	55	3.8	53	79	7	222	21	25	17	35	1.95
46492229--46492429	108	1.8	110	88	4	309	21	25	17	34	1.96
46499764--46499970	55	3.8	53	79	9	206	22	25	15	36	1.94
46502208--46502249	21	2.0	21	85	0	57	16	38	33	11	1.86
46511301--46511351	25	2.0	25	100	0	102	43	29	15	11	1.82
46517900--46518066	40	4.2	40	79	6	169	26	22	26	24	2.00
46525910--46526076	40	4.2	40	79	6	169	26	22	26	24	2.00
46530648--46531049	47	8.7	47	88	7	581	29	30	7	31	1.86
46530648--46531049	144	2.9	142	91	5	628	29	30	7	31	1.86
46534792--46534930	43	3.2	43	93	0	233	32	32	20	14	1.93
46534919--46535161	40	6.0	40	87	2	263	24	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46534961--46535161	40	4.9	42	90	4	268	25	26	22	25	2.00
46537095--46537501	47	8.6	47	90	4	597	29	31	7	31	1.86
46537095--46537491	191	2.1	190	92	2	656	29	31	8	31	1.86
46540448--46540529	28	2.9	29	80	5	87	28	31	14	25	1.95
46544666--46544710	22	2.0	22	87	8	65	26	22	28	22	1.99
46545155--46545208	27	2.0	27	81	0	63	33	12	16	37	1.87
46545169--46545542	27	13.9	26	77	12	142	30	10	19	39	1.85
46545173--46545276	55	1.9	55	85	0	145	27	10	18	43	1.83
46545231--46545464	54	4.4	53	77	6	195	28	8	20	42	1.81
46545155--46545490	81	4.1	81	74	7	220	29	9	19	41	1.83
46545231--46545491	54	4.9	52	74	10	181	28	8	20	42	1.81
46545156--46545507	54	6.5	54	73	11	159	29	9	19	40	1.84
46545484--46545542	26	2.2	27	90	3	93	35	11	16	35	1.86
46545528--46545594	27	2.5	27	95	0	116	28	22	17	31	1.97
46548796--46548839	22	2.0	23	86	4	63	45	20	4	29	1.71
46550468--46550538	27	2.6	27	95	0	124	47	25	7	19	1.74
46550526--46550797	27	10.1	27	87	0	346	36	19	18	25	1.94
46551154--46551212	22	2.7	22	81	0	64	20	25	22	32	1.98
46551196--46551247	27	1.9	27	84	7	70	23	23	17	36	1.95
46551369--46551503	27	5.0	26	82	6	126	20	24	18	36	1.95
46551377--46551505	55	2.4	53	85	5	168	20	24	18	35	1.95
46551623--46551747	6	20.3	6	70	16	78	19	19	13	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46551630--46551687	25	2.3	25	87	0	80	20	20	12	46	1.82
46551654--46551720	19	3.6	19	76	11	75	20	20	10	47	1.79
46551645--46551739	37	2.6	37	84	0	127	21	20	11	47	1.81
46552773--46553007	118	2.0	118	89	1	364	37	19	8	34	1.83
46553013--46553109	40	2.4	40	77	0	104	34	25	17	22	1.96
46557498--46557681	40	4.6	39	75	6	138	26	23	27	22	2.00
46557538--46557726	80	2.4	81	77	4	186	23	24	29	22	1.99
46560214--46560386	46	3.7	46	75	15	185	22	17	27	32	1.96
46562811--46562901	34	2.7	33	82	3	110	25	24	24	26	2.00
46564104--46564169	34	1.9	34	87	6	98	28	19	24	27	1.99
46564103--46564176	34	2.2	34	82	4	96	31	20	22	25	1.98
46564441--46564492	27	1.9	27	88	7	79	28	15	19	36	1.92
46566674--46566764	40	2.3	40	83	7	105	21	28	26	23	1.99
46566733--46566823	40	2.3	40	86	3	121	19	21	25	32	1.97
46573547--46573605	16	3.7	16	81	0	73	49	15	23	11	1.77
46573814--46573938	29	4.3	29	78	5	137	24	13	32	29	1.94
46578146--46578198	16	3.3	16	74	10	54	47	15	20	16	1.83
46578414--46578537	29	4.3	29	86	1	169	25	15	30	29	1.96
46578982--46579056	36	2.1	36	94	0	132	16	18	17	48	1.82
46578982--46579065	36	2.3	36	89	4	116	17	19	16	46	1.84
46579605--46579729	29	4.3	29	85	1	162	24	13	30	31	1.94
46581996--46582080	31	2.8	31	85	1	118	21	25	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46582302--46582371	25	2.8	25	91	0	104	24	21	25	28	1.99
46582419--46582467	11	4.7	11	80	12	59	32	18	12	36	1.88
46589941--46590025	31	2.8	31	80	1	91	27	22	16	34	1.95
46590220--46590290	24	3.0	23	83	8	79	26	19	22	30	1.98
46590236--46590315	25	3.2	25	87	1	108	26	21	20	32	1.97
46590363--46590411	11	4.7	11	80	12	59	32	18	12	36	1.88
46591244--46591270	9	3.0	9	100	0	54	55	33	0	11	1.35
46593041--46593077	19	2.1	19	85	14	53	27	18	0	54	1.44
46593928--46594030	29	3.6	29	87	0	143	25	33	15	26	1.95
46595307--46595339	13	2.5	13	95	0	57	0	12	0	87	0.53
46614868--46614908	18	2.4	17	88	8	57	46	9	0	43	1.36
46619224--46619266	18	2.4	18	96	0	77	46	11	0	41	1.40
46620808--46620872	34	1.9	34	84	6	87	29	20	23	27	1.98
46620894--46620936	22	1.9	23	90	4	70	23	53	2	20	1.57
46623094--46623222	47	2.7	47	83	4	161	37	27	15	20	1.92
46623091--46623229	48	2.9	47	83	3	172	35	28	15	20	1.93
46623770--46623809	21	2.0	20	90	5	62	37	22	5	35	1.76
46625815--46625850	16	2.2	16	100	0	72	27	27	19	25	1.99
46628931--46628957	2	13.5	2	100	0	54	48	0	0	51	1.00
46633359--46633424	28	2.3	28	84	2	87	30	30	13	25	1.94
46633638--46633675	16	2.4	16	95	0	67	10	23	18	47	1.79
46635197--46635383	71	2.7	68	92	5	272	18	28	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46635220--46635383	71	2.3	71	98	0	319	18	28	18	34	1.95
46635220--46635417	71	2.8	70	90	3	258	20	28	17	33	1.96
46642270--46642456	71	2.7	68	92	5	272	18	28	18	34	1.95
46642293--46642456	71	2.3	71	98	0	319	18	28	18	34	1.95
46642293--46642490	71	2.8	70	90	3	258	20	28	17	33	1.96
46645898--46645989	40	2.3	40	92	0	148	29	25	14	31	1.94
46656431--46656529	28	3.5	29	89	5	150	32	27	12	28	1.92
46658844--46659004	40	4.1	40	77	4	155	25	27	21	24	1.99
46660931--46660968	19	2.1	18	85	9	51	13	18	2	65	1.37
46667527--46667626	28	3.5	29	93	5	161	31	27	13	29	1.93
46668714--46668751	19	2.1	18	85	9	51	13	18	2	65	1.37
46669693--46669726	14	2.5	13	86	9	50	67	11	2	17	1.34
46670952--46670981	14	2.1	15	93	6	53	0	0	10	90	0.47
46670954--46670982	8	3.8	8	95	4	51	0	0	6	93	0.36
46673075--46673251	31	5.7	31	89	0	248	28	24	15	31	1.96
46673277--46673366	42	2.1	42	93	0	153	33	18	15	32	1.93
46673501--46673584	25	3.4	24	82	9	89	25	22	23	28	1.99
46673514--46673583	25	2.8	25	89	4	97	24	22	27	25	2.00
46674486--46674749	27	9.7	27	77	6	192	30	8	19	40	1.82
46674599--46674749	27	5.6	27	86	1	205	28	8	21	41	1.82
46674602--46674791	81	2.4	81	78	6	188	29	11	19	40	1.86
46674781--46674910	27	4.8	27	81	3	163	36	5	26	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46678286--46678328	20	2.2	20	100	0	86	41	18	25	13	1.88
46678603--46678683	39	2.1	39	88	4	119	7	17	25	49	1.72
46687241--46687463	79	2.8	79	84	7	283	26	21	26	26	2.00
46687241--46687464	40	5.7	40	89	5	289	25	21	26	25	1.99
46695016--46695241	40	5.7	40	88	4	280	26	21	26	25	1.99
46700497--46700626	40	3.3	39	81	4	145	23	24	28	23	2.00
46703850--46703876	3	9.0	3	100	0	54	33	0	33	33	1.58
46708793--46708822	15	2.0	15	93	0	51	26	0	16	56	1.40
46710994--46711022	4	7.2	4	100	0	58	24	0	0	75	0.80
46710770--46711282	263	2.0	262	92	0	855	31	6	26	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318