genome.fa.s2.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  222  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69871688--69871836	40	3.7	41	78	15	134	30	25	17	26	1.97
69874508--69874609	29	3.5	29	83	2	125	25	16	33	24	1.96
69874597--69874697	28	3.5	28	86	6	114	29	13	26	29	1.94
69876461--69876666	43	4.8	43	82	7	220	29	29	17	24	1.97
69876461--69876665	86	2.4	86	85	3	270	28	29	17	24	1.97
69881794--69881847	25	2.2	24	83	9	65	33	5	3	57	1.40
69889117--69889225	43	2.6	42	82	7	148	28	22	15	33	1.95
69889104--69889225	43	2.9	42	80	7	147	27	24	15	31	1.96
69889374--69889423	23	2.1	25	82	14	61	46	10	4	40	1.56
69894121--69894195	19	4.0	19	76	10	66	69	1	5	24	1.17
69894129--69894195	6	10.8	6	80	6	53	71	1	5	20	1.15
69894108--69894195	25	3.6	25	74	8	74	69	3	4	22	1.22
69894100--69894163	12	5.5	12	76	10	62	67	3	0	29	1.06
69897768--69897823	28	2.0	28	89	6	87	51	1	16	30	1.54
69905085--69905119	15	2.3	15	90	0	52	22	14	2	60	1.48
69906578--69906618	19	2.2	19	91	8	66	9	31	0	58	1.31
69912469--69912662	48	4.0	48	96	0	352	34	6	28	30	1.82
69912803--69912905	37	2.8	37	96	0	188	23	20	32	24	1.98
69913856--69913909	26	2.1	26	96	0	99	29	25	16	27	1.97
69915633--69915666	17	2.0	17	88	11	52	26	23	11	38	1.89
69917322--69917480	85	1.9	84	82	5	203	27	24	20	27	1.99
69919248--69919314	30	2.2	30	91	0	107	32	19	28	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69921024--69921070	23	2.0	23	95	0	85	25	10	23	40	1.87
69921687--69921715	14	2.1	14	100	0	58	27	13	13	44	1.82
69922057--69922231	43	4.1	43	78	8	167	25	14	25	34	1.94
69934961--69935124	43	3.8	44	79	7	142	23	17	26	32	1.96
69939186--69939234	20	2.7	18	77	22	57	51	4	2	42	1.32
69939767--69939801	13	2.8	13	95	4	63	40	11	0	48	1.39
69945942--69946061	45	2.6	45	89	5	179	20	22	28	28	1.99
69953468--69953637	46	3.7	45	79	13	204	21	21	28	28	1.99
69962732--69962783	27	2.0	26	84	3	68	34	21	26	17	1.95
69963381--69963434	27	2.0	27	85	3	74	35	20	22	22	1.96
69963436--69963581	27	5.4	27	85	1	166	26	19	17	36	1.94
69963464--69963569	55	1.9	55	92	0	176	26	17	16	38	1.92
69970730--69970904	45	3.8	49	80	13	174	29	27	21	22	1.99
69970735--69970904	93	1.8	93	92	1	288	28	28	21	21	1.99
69971323--69971382	30	2.0	30	90	0	93	30	25	8	36	1.85
69972373--69972437	23	3.1	20	75	16	60	30	49	4	15	1.65
69973616--69973670	14	3.9	13	77	13	56	60	0	14	25	1.35
69978231--69978316	43	2.0	43	97	2	165	30	16	11	41	1.83
69982235--69982454	39	5.6	40	82	7	256	25	20	27	25	1.99
69990369--69990553	40	4.7	40	84	7	227	23	22	28	25	1.99
69990369--69990551	79	2.3	81	85	7	241	24	22	27	25	2.00
69990370--69990586	79	2.7	78	79	12	237	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70012000--70012025	6	4.3	6	100	0	52	15	0	0	84	0.62
70016082--70016210	54	2.4	54	84	7	165	18	26	17	37	1.93
70016059--70016212	27	5.7	27	73	11	118	18	25	17	37	1.93
70018449--70018578	40	3.2	40	83	4	156	23	24	27	23	2.00
70020305--70020348	22	2.0	22	95	0	79	36	6	20	36	1.79
70022530--70022575	20	2.3	20	85	7	58	41	8	13	36	1.75
70026871--70026964	47	2.0	47	97	0	179	24	23	7	44	1.79
70036231--70036413	79	2.3	81	85	7	241	25	27	22	24	2.00
70036210--70036413	40	5.1	40	83	8	247	25	27	22	24	1.99
70044543--70044616	29	2.6	29	95	0	139	27	14	31	27	1.95
70044600--70044675	29	2.6	29	78	0	89	22	19	35	22	1.96
70044543--70044675	58	2.3	58	80	2	133	24	17	33	24	1.96
70052568--70052604	14	2.6	14	100	0	74	18	32	32	16	1.93
70053416--70053457	21	2.0	21	85	4	57	28	11	16	42	1.84
70054150--70054201	8	6.6	8	80	12	63	1	19	0	78	0.84
70054158--70054193	17	2.1	17	89	0	54	2	16	0	80	0.83
70054147--70054201	23	2.3	23	84	9	67	1	20	0	78	0.85
70054156--70054202	15	2.9	17	75	18	55	4	19	0	76	0.95
70054512--70054547	6	6.0	6	93	0	63	52	0	33	13	1.41
70063291--70063322	16	2.0	16	100	0	64	43	12	18	25	1.85
70064987--70065387	199	2.0	199	96	0	739	32	29	13	24	1.94
70073009--70073193	67	2.9	63	76	11	178	29	15	30	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70076551--70076710	29	5.5	29	82	4	180	25	31	16	26	1.97
70077992--70078040	26	2.0	24	84	8	62	8	16	0	75	1.03
70080611--70080781	93	1.8	93	91	2	281	29	28	20	21	1.98
70080608--70080778	46	3.7	46	77	14	183	30	28	20	21	1.98
70081470--70081533	30	2.1	30	97	0	119	40	26	4	28	1.76
70087429--70087472	2	22.5	2	95	4	81	50	0	0	50	1.00
70087971--70088037	27	2.5	28	85	9	86	59	4	1	34	1.26
70090312--70090340	14	2.0	15	93	6	51	55	6	24	13	1.63
70090395--70090647	89	2.8	90	80	8	293	36	19	17	26	1.94
70090557--70090585	15	2.0	15	93	6	51	58	6	13	20	1.58
70090712--70090755	14	3.2	14	87	3	54	61	6	13	18	1.54
70090708--70090755	13	3.6	13	83	5	69	56	6	14	22	1.61
70090749--70090887	75	1.9	75	89	0	215	28	23	19	28	1.98
70090974--70091007	14	2.4	14	95	0	59	58	5	17	17	1.57
70090848--70091177	177	1.9	172	88	6	493	36	19	16	28	1.93
70090849--70091177	88	3.8	87	87	4	457	36	18	16	28	1.93
70092013--70092092	41	2.0	40	87	2	115	12	18	15	53	1.72
70104204--70104270	27	2.5	28	80	9	77	61	4	1	32	1.25
70106399--70106530	47	2.8	48	89	3	196	32	28	17	21	1.96
70111845--70111991	67	2.2	66	83	8	172	33	16	28	21	1.95
70113140--70113172	2	16.5	2	100	0	66	48	0	0	51	1.00
70118542--70118709	90	1.9	90	81	2	203	25	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70118722--70118840	47	2.5	49	83	4	152	24	29	20	26	1.99
70118626--70118847	42	4.9	48	71	14	157	25	28	19	26	1.99
70124624--70124912	39	7.7	38	81	11	314	30	29	21	19	1.98
70124676--70124733	27	2.1	27	100	0	116	31	29	20	18	1.97
70124985--70125057	28	2.6	28	82	0	92	27	24	10	36	1.89
70127585--70127654	27	2.5	28	86	2	97	27	14	25	32	1.94
70131325--70131507	39	4.6	39	81	7	199	24	24	27	23	2.00
70131325--70131507	78	2.3	81	85	7	241	24	24	27	23	2.00
70131325--70131543	78	2.8	79	80	8	225	25	23	26	24	2.00
70131325--70131534	39	5.3	39	78	10	187	24	23	27	24	2.00
70139478--70139661	79	2.3	81	84	8	234	24	23	28	23	2.00
70139478--70139668	40	4.8	39	81	8	215	23	24	28	24	2.00
70143470--70143600	47	2.8	47	85	3	165	23	14	28	33	1.94
70145154--70145186	2	16.5	2	100	0	66	48	0	0	51	1.00
70146100--70146229	38	3.4	39	89	1	183	26	24	26	22	2.00
70147021--70147142	39	3.1	39	93	0	208	24	22	29	22	1.99
70145709--70147540	922	2.0	922	94	0	3222	32	13	21	32	1.92
70149429--70149634	42	4.8	42	70	8	135	29	16	25	28	1.97
70149383--70149634	132	1.9	132	82	4	312	28	17	25	28	1.98
70149712--70149752	21	1.9	22	85	5	57	39	2	29	29	1.70
70157077--70157292	48	4.6	48	78	7	176	26	15	27	30	1.96
70157175--70157336	42	3.7	42	83	6	155	25	15	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70157254--70157421	90	1.9	90	83	2	221	28	19	26	25	1.98
70158942--70158968	10	2.7	10	100	0	54	29	0	7	62	1.22
70160396--70160442	2	23.5	2	95	0	85	48	0	0	51	1.00
70161630--70161824	38	5.0	38	77	3	167	24	20	23	32	1.98
70167180--70167309	40	3.2	40	83	4	165	23	29	25	22	1.99
70175275--70175404	40	3.2	40	83	4	165	23	29	25	22	1.99
70177769--70177833	28	2.3	28	86	0	94	38	9	23	29	1.85
70177906--70178156	39	6.5	39	87	1	326	19	20	27	32	1.97
70178027--70178177	39	3.8	39	87	2	135	19	21	27	31	1.97
70180991--70181155	40	4.2	40	78	7	149	25	23	27	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318