genome.fa.s2.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  141  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43208855--43208997	24	6.0	24	91	4	209	26	22	22	28	1.99
43208855--43208996	47	3.0	48	90	5	207	26	22	22	28	1.99
43208854--43208997	71	2.0	72	89	4	220	26	22	22	29	1.99
43209047--43209107	20	3.0	20	95	0	113	34	19	9	36	1.85
43209047--43209102	11	5.5	11	71	16	57	32	19	10	37	1.86
43210492--43210781	27	10.8	27	83	6	340	41	7	23	28	1.81
43210491--43210781	81	3.6	81	91	2	453	40	7	23	28	1.81
43210777--43210876	27	3.7	27	80	9	107	32	10	19	39	1.84
43210786--43210891	27	3.9	27	77	9	83	35	9	16	37	1.82
43221897--43221966	33	2.1	33	89	0	104	41	11	15	31	1.83
43225709--43225767	16	3.7	16	80	8	75	11	22	16	49	1.78
43230223--43230275	16	3.3	15	82	10	61	13	24	15	47	1.81
43232422--43232606	79	2.3	80	81	7	207	25	27	22	24	2.00
43232422--43232606	40	4.7	39	80	9	196	25	27	22	24	2.00
43247518--43247580	24	2.6	24	100	0	126	34	26	17	20	1.95
43255272--43255358	24	3.6	24	100	0	174	35	26	17	20	1.95
43264653--43264768	18	6.1	18	72	21	94	11	24	25	38	1.88
43264653--43264768	57	2.0	57	93	0	196	11	24	25	38	1.88
43264710--43264810	39	2.6	39	83	0	130	14	24	22	37	1.92
43269041--43269246	40	5.2	40	87	1	270	28	27	20	22	1.99
43271690--43271944	40	6.6	40	86	6	346	23	21	29	26	1.99
43271690--43271908	77	2.8	78	91	4	338	23	21	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43271690--43271944	117	2.2	116	86	6	347	23	21	29	26	1.99
43271690--43271944	77	3.3	77	87	5	322	23	21	29	26	1.99
43276066--43276233	40	4.2	40	86	6	200	27	27	21	23	1.99
43276066--43276233	80	2.1	80	86	4	232	27	27	21	23	1.99
43282767--43282985	40	5.6	40	90	3	329	22	21	29	26	1.99
43295768--43296027	46	5.6	46	71	15	212	29	29	18	22	1.98
43295822--43295990	47	3.6	47	74	13	186	28	28	19	22	1.98
43295775--43296027	93	2.7	93	94	0	425	29	29	18	22	1.98
43298453--43298510	30	2.0	29	93	3	98	58	15	15	10	1.62
43298452--43298501	15	3.4	15	76	13	50	62	14	16	8	1.54
43301474--43301745	46	5.8	50	77	16	271	28	29	20	21	1.98
43301481--43301745	93	2.9	93	94	0	460	28	29	20	21	1.98
43306238--43306289	25	2.1	25	96	0	95	32	13	17	36	1.89
43308475--43308650	46	3.8	45	78	10	203	21	21	28	28	1.98
43308472--43308643	93	1.8	93	94	0	308	22	21	29	27	1.99
43316333--43316423	37	2.4	37	92	1	155	24	32	18	24	1.97
43316519--43316822	49	6.4	49	89	6	473	28	32	9	29	1.88
43316540--43316817	89	3.0	89	90	6	421	28	32	8	29	1.88
43316519--43316768	138	1.8	138	96	0	464	29	32	9	28	1.88
43320200--43320392	29	6.7	29	96	0	341	24	32	16	26	1.96
43320566--43320810	40	6.1	40	95	0	346	24	26	20	28	1.99
43322628--43322718	37	2.4	37	92	1	155	24	32	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43322814--43323116	49	6.4	49	89	7	473	29	32	9	29	1.88
43325956--43326126	40	4.3	40	77	7	170	26	19	26	27	1.99
43328158--43328313	55	2.9	55	96	2	282	35	23	12	27	1.92
43328171--43328332	27	5.9	27	81	4	180	35	22	13	28	1.92
43328209--43328364	27	5.6	30	73	12	111	31	25	13	29	1.94
43328970--43328999	2	15.0	2	92	0	51	46	0	3	50	1.18
43336039--43336219	29	6.5	27	83	7	179	30	25	15	28	1.96
43336039--43336190	27	5.5	26	83	9	153	32	25	15	26	1.96
43336827--43336857	2	15.5	2	93	0	53	45	0	3	51	1.17
43345017--43345188	40	4.3	40	80	3	186	25	21	26	26	1.99
43346809--43347050	125	1.9	125	92	0	403	26	28	24	20	1.99
43349184--43349312	47	2.8	48	79	13	144	25	17	30	27	1.97
43349182--43349399	46	4.7	47	77	9	148	27	16	30	25	1.97
43350158--43350189	12	2.7	12	100	0	64	31	25	34	9	1.87
43350620--43350660	22	1.9	22	90	5	66	12	43	26	17	1.84
43351205--43351292	44	2.0	44	86	4	124	29	27	19	23	1.98
43354029--43354085	28	2.0	28	100	0	114	40	14	21	24	1.90
43355552--43355605	25	2.2	25	89	0	81	20	14	25	38	1.91
43366151--43366190	2	20.5	2	94	5	73	52	0	47	0	1.00
43369044--43369082	18	2.2	18	90	9	62	35	5	2	56	1.35
43369044--43369094	19	2.7	19	82	14	54	39	3	3	52	1.38
43373423--43373567	43	3.4	43	94	1	247	27	30	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43376675--43376749	27	2.9	27	84	4	91	24	25	36	14	1.93
43376678--43376771	25	3.7	25	82	4	100	22	22	39	15	1.92
43377443--43377485	21	2.0	21	82	8	52	27	44	6	20	1.77
43377667--43377795	7	18.0	7	68	15	68	41	39	0	18	1.56
43377718--43377810	29	3.4	28	80	11	86	40	40	0	18	1.50
43377741--43377806	14	4.9	14	70	17	50	37	43	0	18	1.50
43378142--43378219	41	1.9	40	89	2	120	20	24	23	32	1.98
43378142--43378226	40	2.1	41	86	2	118	25	23	21	29	1.99
43382289--43382327	5	7.8	5	100	0	78	79	0	0	20	0.73
43388873--43389049	44	4.0	45	80	10	181	25	16	25	32	1.96
43388886--43389086	84	2.3	88	79	9	218	26	17	26	29	1.97
43396858--43396944	18	4.6	19	72	21	67	12	22	3	60	1.47
43396944--43396976	17	1.9	17	93	0	57	0	21	0	78	0.75
43400218--43400271	21	2.7	20	82	5	56	37	5	0	57	1.22
43400887--43400936	26	1.9	26	87	0	73	46	0	10	44	1.37
43412245--43412371	47	2.8	44	81	11	148	26	18	30	24	1.98
43412433--43412567	49	2.8	48	82	6	164	25	18	30	25	1.98
43412960--43412985	13	2.0	13	100	0	52	23	0	15	61	1.33
43415870--43415923	26	2.1	26	93	6	92	24	20	22	33	1.97
43415977--43416049	36	2.0	36	100	0	146	30	16	21	31	1.95
43416029--43416099	28	2.5	29	84	9	92	22	18	19	39	1.92
43416023--43416147	29	4.4	29	74	6	103	28	16	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43418370--43418508	56	2.5	55	77	5	156	22	23	13	40	1.90
43419754--43419794	18	2.3	18	87	8	57	4	21	0	73	1.02
43422944--43423028	24	3.5	24	96	0	161	36	24	17	21	1.94
43426144--43426217	29	2.5	29	88	2	85	24	31	16	28	1.96
43427379--43427436	20	3.2	18	79	13	57	5	15	1	77	1.02
43431586--43431769	40	4.6	39	75	6	138	26	23	27	22	2.00
43431626--43431814	80	2.4	81	77	4	186	23	24	29	22	1.99
43437508--43437559	27	2.0	26	88	3	77	23	26	15	34	1.94
43437592--43437625	2	17.0	2	100	0	68	50	0	0	50	1.00
43437622--43437681	27	2.3	26	85	2	75	21	23	20	35	1.96
43445961--43446109	42	3.5	42	98	0	280	29	14	33	22	1.94
43446117--43446186	27	2.5	28	86	2	97	27	14	25	32	1.94
43447831--43447950	46	2.6	46	97	0	222	35	14	24	25	1.93
43447912--43448007	30	3.2	30	63	28	78	33	16	26	23	1.96
43447938--43447963	13	2.0	13	100	0	52	30	15	23	30	1.95
43447892--43448009	59	2.0	59	100	0	236	33	15	25	25	1.95
43447951--43448163	46	4.6	46	85	1	275	39	15	23	22	1.91
43447846--43448113	105	2.7	105	87	7	382	36	14	23	24	1.93
43450007--43450066	27	2.3	26	82	2	66	36	20	21	21	1.95
43450106--43450156	27	1.9	26	84	4	66	35	19	27	17	1.94
43453672--43453845	46	3.8	46	75	11	167	29	26	20	23	1.99
43453679--43453851	93	1.9	93	87	2	258	28	26	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43456229--43456273	25	1.9	23	86	13	65	44	20	0	35	1.51
43456628--43456806	41	4.3	40	85	8	243	35	25	20	17	1.95
43458483--43458540	27	2.1	27	84	6	73	34	17	17	31	1.93
43460849--43460877	12	2.4	12	100	0	58	37	0	24	37	1.56
43467231--43467282	17	2.9	18	85	8	70	48	28	0	23	1.51
43469400--43469513	55	2.1	55	93	0	192	28	28	19	22	1.98
43475601--43475629	15	2.0	15	93	6	51	55	20	13	10	1.68
43476236--43476279	15	2.9	15	89	0	70	56	13	13	15	1.67
43478619--43478740	61	2.0	61	100	0	244	42	22	6	27	1.78
43482854--43482933	27	3.0	27	90	3	117	25	17	20	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318