genome.fa.s2.2.7.7.80.10.50.1000.299.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  299  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93778839--93778877	14	2.7	15	84	8	53	2	23	0	74	0.94
93783883--93783919	18	2.1	18	89	0	56	21	5	13	59	1.54
93787464--93787497	4	8.5	4	100	0	68	50	23	0	26	1.50
93788259--93788286	1	28.0	1	100	0	56	100	0	0	0	0.00
93789604--93789643	3	13.3	3	100	0	80	32	0	0	67	0.91
93790853--93790913	32	1.9	32	89	0	95	39	9	18	32	1.83
93794175--93794685	261	2.0	260	94	1	898	27	22	12	37	1.91
93817745--93817805	29	2.0	31	81	6	72	37	0	40	21	1.53
93821642--93821693	15	3.4	15	77	15	61	69	0	3	26	1.06
93821628--93821697	30	2.3	30	85	7	97	65	0	4	30	1.11
93825433--93825460	2	14.0	2	100	0	56	50	0	0	50	1.00
93827358--93827387	3	10.0	3	100	0	60	33	0	33	33	1.58
93828479--93828509	5	6.2	5	100	0	62	41	0	58	0	0.98
93829069--93829105	3	12.3	3	100	0	74	64	0	35	0	0.94
93829283--93829328	6	7.7	6	95	0	83	32	0	65	2	1.05
93832539--93832584	2	23.0	2	100	0	92	50	0	0	50	1.00
93833374--93833685	156	2.0	156	91	2	511	38	15	12	33	1.85
93840535--93840672	41	3.3	41	86	7	190	36	24	18	19	1.94
93847160--93847319	41	3.9	41	91	3	257	36	22	19	21	1.95
93847160--93847319	84	1.9	82	91	2	257	36	22	19	21	1.95
93849222--93849254	12	2.9	11	91	8	57	9	0	3	87	0.63
93852267--93852293	13	2.1	13	100	0	54	22	14	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93855894--93855919	10	2.6	10	100	0	52	34	19	7	38	1.80
93857977--93858018	18	2.3	19	84	12	52	19	23	2	54	1.55
93866520--93866566	6	7.5	6	83	7	58	80	0	6	12	0.88
93877871--93877915	22	2.0	23	87	8	67	37	22	4	35	1.74
93881698--93882516	141	5.9	139	84	4	935	27	16	22	33	1.95
93882643--93882719	7	11.7	7	78	13	92	12	0	45	41	1.43
93883697--93883795	35	2.8	35	81	0	126	17	40	18	24	1.91
93896923--93897008	44	2.0	44	90	0	136	31	9	18	40	1.82
93897406--93897492	35	2.4	36	84	5	113	29	18	12	39	1.88
93897274--93897905	73	8.7	73	79	4	548	27	20	14	37	1.92
93897363--93897905	147	3.7	146	81	5	562	27	21	14	36	1.92
93897377--93897905	37	14.5	35	73	10	247	27	20	14	37	1.92
93905959--93905998	19	2.0	20	90	4	64	32	0	5	62	1.17
93906867--93906913	19	2.5	19	96	0	85	14	36	21	27	1.93
93920594--93920658	34	1.9	33	93	3	112	27	26	27	18	1.98
93920593--93920687	34	2.8	33	82	4	109	28	23	27	21	1.99
93923761--93923865	39	2.7	39	83	2	122	22	25	27	23	2.00
93928980--93929059	23	3.3	24	82	10	74	35	22	20	22	1.96
93929001--93929069	23	2.9	24	86	2	95	37	18	21	21	1.94
93930851--93930881	2	15.0	2	93	6	53	48	3	0	48	1.17
93932858--93932930	6	12.2	6	91	0	101	21	2	16	58	1.50
93946655--93946682	7	4.0	7	100	0	56	28	0	14	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93955407--93955523	57	2.1	57	85	3	155	29	16	13	40	1.87
93958606--93958698	43	2.1	43	96	2	168	26	21	20	31	1.98
93963674--93963719	21	2.2	21	84	7	58	15	13	4	67	1.38
93963684--93963724	21	2.0	21	90	0	64	12	12	7	68	1.39
93964296--93964334	20	2.0	20	100	0	78	56	15	5	23	1.59
93964298--93964342	20	2.2	20	88	0	63	57	17	4	20	1.56
93966000--93966114	44	2.6	44	83	2	140	35	13	21	28	1.92
93966007--93966133	44	2.8	45	80	4	139	33	14	23	29	1.94
93973362--93973476	44	2.6	44	85	2	149	35	13	22	27	1.92
93973362--93973495	46	3.0	45	82	4	153	35	14	23	26	1.93
93975719--93975756	18	2.1	19	90	5	60	76	2	2	18	1.02
93975721--93975764	19	2.4	18	84	3	52	75	6	2	15	1.12
93976223--93976303	28	2.9	28	92	1	126	33	20	23	22	1.97
93976423--93976477	27	2.0	27	92	0	92	32	9	21	36	1.85
93981848--93981928	28	2.9	28	94	1	135	32	20	24	22	1.98
93982044--93982108	28	2.3	28	94	0	112	30	7	27	33	1.85
93984109--93984144	16	2.1	16	90	10	54	44	0	0	55	0.99
93984571--93984615	19	2.4	19	82	17	58	66	0	2	31	1.04
93984571--93984615	18	2.3	20	78	21	60	66	0	2	31	1.04
93991327--93991352	6	4.3	6	100	0	52	0	30	15	53	1.42
93995208--93995299	45	2.0	45	97	0	175	33	13	21	31	1.92
93999886--93999945	25	2.5	22	77	15	57	38	3	0	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94000085--94000135	18	2.8	19	79	5	52	33	1	3	60	1.26
94001130--94001173	23	1.9	23	85	0	61	52	6	13	27	1.66
94001264--94001288	13	1.9	13	100	0	50	68	0	8	24	1.16
94001353--94001472	27	4.5	27	71	13	81	58	3	7	30	1.42
94001402--94001465	25	2.4	25	82	12	67	56	6	9	28	1.55
94001740--94001788	2	25.5	2	87	8	75	55	0	0	44	0.99
94003435--94003471	2	19.0	2	88	5	58	51	0	0	48	1.00
94005625--94005666	8	5.4	8	94	5	68	50	2	21	26	1.61
94005625--94005666	15	2.7	16	92	3	68	50	2	21	26	1.61
94005826--94005865	13	3.3	13	80	20	59	35	0	15	50	1.44
94005792--94005865	23	3.3	23	86	1	105	39	1	10	48	1.47
94014763--94014858	49	2.0	49	85	4	131	42	5	15	36	1.70
94015892--94015951	3	20.0	3	92	0	102	63	0	33	3	1.11
94017024--94017066	3	14.3	3	90	0	59	41	0	25	32	1.56
94017024--94017066	18	2.4	18	96	0	77	41	0	25	32	1.56
94018312--94018355	19	2.2	20	84	4	54	34	4	11	50	1.59
94021570--94021610	21	2.0	21	85	0	55	12	17	24	46	1.82
94021821--94021878	28	2.1	28	100	0	116	39	13	10	36	1.79
94022187--94022270	41	2.0	41	100	0	168	40	7	21	30	1.80
94023132--94023195	32	2.0	32	90	0	101	25	10	9	54	1.65
94029540--94029587	18	2.7	18	74	6	53	64	0	2	33	1.05
94033378--94033443	23	3.0	22	76	12	64	27	21	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94034538--94034563	13	2.0	13	100	0	52	69	7	7	15	1.35
94035957--94036000	21	2.2	21	84	8	56	40	0	0	59	0.98
94036621--94036672	27	1.9	27	84	7	70	57	3	3	34	1.35
94039248--94039274	4	6.8	4	100	0	54	74	0	0	25	0.83
94041399--94041438	3	13.3	3	100	0	80	67	0	0	32	0.91
94047482--94047523	22	1.9	22	90	9	68	0	21	0	78	0.75
94047485--94047523	13	3.1	12	82	10	51	0	20	0	79	0.73
94048742--94048784	21	2.0	21	82	8	52	37	18	2	41	1.63
94049448--94049561	43	2.6	44	78	12	119	35	23	15	25	1.95
94051251--94051287	11	3.5	11	88	7	58	72	0	2	24	0.97
94051246--94051287	21	2.0	22	90	4	68	71	0	2	26	0.98
94057087--94057234	48	3.1	49	80	9	171	21	14	27	36	1.93
94058017--94058050	16	2.1	16	100	0	68	17	0	23	58	1.38
94065024--94065177	37	4.2	37	82	5	204	17	11	27	43	1.83
94065024--94065188	74	2.2	74	88	5	237	18	10	27	43	1.83
94068741--94068791	21	2.3	22	83	10	59	35	3	13	47	1.62
94068751--94068791	21	1.9	22	90	5	66	34	4	12	48	1.62
94085900--94086075	46	3.8	46	81	10	232	20	21	29	28	1.98
94085896--94086067	93	1.8	93	96	0	317	20	22	30	27	1.98
94089028--94089096	15	4.6	15	83	0	84	11	17	13	57	1.64
94089019--94089106	30	3.0	30	81	8	99	10	17	15	56	1.66
94091492--94091620	46	2.8	46	93	0	222	19	21	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94093397--94093429	17	2.0	17	94	5	59	36	15	0	48	1.45
94093710--94094032	46	7.0	46	90	1	425	21	23	14	40	1.90
94103277--94103303	4	6.8	4	100	0	54	48	25	0	25	1.52
94109543--94109569	2	13.5	2	100	0	54	51	0	0	48	1.00
94109989--94110018	2	15.0	2	100	0	60	50	0	0	50	1.00
94114758--94114799	20	2.0	21	95	4	77	54	0	4	40	1.21
94115587--94115638	15	3.3	15	79	10	59	57	28	0	13	1.36
94116255--94116297	16	2.5	18	81	11	54	55	6	0	37	1.27
94117336--94117362	2	13.5	2	100	0	54	48	0	0	51	1.00
94120487--94120520	13	2.6	13	90	9	52	55	14	14	14	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318