genome.fa.s2.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  212  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66674338--66674379	19	2.2	19	83	8	50	33	0	19	47	1.49
66675353--66675494	3	47.3	3	97	0	203	26	0	6	66	1.15
66683302--66683346	21	2.1	21	87	0	63	48	0	15	35	1.45
66683316--66683350	15	2.3	15	90	0	52	51	0	11	37	1.38
66683478--66683845	3	122.0	3	77	13	294	61	2	5	30	1.33
66684515--66684598	6	14.0	6	97	0	150	33	1	16	48	1.54
66686089--66686135	17	2.8	18	78	18	57	36	0	0	63	0.94
66686787--66686863	20	3.9	20	75	21	65	53	0	46	0	1.00
66686836--66686871	17	2.1	18	94	5	65	55	0	44	0	0.99
66693655--66693691	13	2.8	13	100	0	74	37	5	16	40	1.71
66700555--66700639	44	1.9	44	88	4	127	37	11	3	47	1.58
66701258--66701320	31	2.0	31	100	0	126	38	11	12	38	1.79
66710795--66710871	29	2.7	29	97	0	145	36	29	18	15	1.92
66712538--66712582	20	2.2	20	88	0	63	35	31	2	31	1.70
66712673--66712790	43	2.8	42	80	2	137	30	23	16	29	1.96
66714309--66714529	40	5.6	40	92	1	329	25	30	20	22	1.98
66716557--66716717	29	5.6	29	85	2	171	24	32	15	27	1.95
66716553--66716714	87	1.9	87	81	0	198	25	31	16	27	1.96
66724718--66724896	40	4.6	40	88	4	240	25	31	20	22	1.98
66726920--66727077	29	5.6	29	79	7	99	25	31	15	27	1.95
66726958--66727077	29	4.2	28	85	8	145	25	27	15	31	1.95
66730318--66730392	38	2.0	38	100	0	150	36	16	5	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66734288--66734341	22	2.5	22	77	14	58	24	22	3	50	1.65
66734692--66734744	22	2.5	21	72	6	54	64	1	5	28	1.27
66734999--66735024	8	3.2	8	100	0	52	34	0	42	23	1.54
66738137--66738208	16	4.5	16	82	0	81	38	6	23	30	1.81
66739082--66739204	65	1.9	65	91	0	201	36	24	4	34	1.77
66747687--66747747	30	2.0	30	83	0	77	31	22	8	37	1.84
66749859--66749897	19	2.1	18	86	13	53	66	15	0	17	1.25
66750624--66750660	14	2.7	13	84	15	56	54	0	0	45	1.00
66755880--66755935	15	3.7	15	81	9	60	14	12	17	55	1.69
66761035--66761081	24	2.0	24	100	0	94	27	17	21	34	1.95
66762266--66762329	31	2.1	31	90	0	101	23	25	15	35	1.94
66762521--66762663	24	6.0	24	90	4	200	27	22	21	28	1.99
66762521--66762662	47	3.0	48	89	5	198	27	22	21	28	1.99
66762520--66762663	71	2.0	72	87	4	211	27	22	21	29	1.99
66762713--66762773	20	3.0	20	92	0	104	32	21	11	34	1.89
66762816--66762863	25	1.9	25	86	0	69	25	16	25	33	1.96
66783082--66783149	28	2.4	27	80	4	73	29	25	19	26	1.98
66787644--66787786	39	3.7	39	90	2	234	26	20	30	22	1.99
66787645--66787826	77	2.3	79	89	2	269	24	22	29	23	1.99
66790274--66790360	18	4.6	18	72	14	68	6	20	2	70	1.22
66792033--66793126	553	2.0	549	93	1	1877	34	14	22	28	1.94
66796380--66796686	53	5.8	53	80	3	321	27	23	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66796373--66796686	106	3.0	106	86	0	412	27	24	13	35	1.92
66796380--66796686	159	1.9	159	81	3	368	27	23	13	35	1.92
66799051--66799090	21	2.0	20	85	5	53	22	27	37	12	1.90
66800376--66800550	48	3.7	47	77	6	183	24	28	18	29	1.98
66800373--66800551	94	1.9	95	90	1	288	24	28	18	29	1.98
66806741--66806780	21	2.0	20	90	5	62	20	27	40	12	1.88
66810981--66811178	71	2.8	70	92	3	294	33	17	28	20	1.95
66811047--66811164	41	3.1	41	60	28	98	32	17	28	21	1.96
66811015--66811178	71	2.3	71	100	0	328	35	17	28	18	1.94
66818551--66818748	71	2.8	70	92	3	294	33	17	28	20	1.95
66818617--66818734	41	3.1	41	60	28	98	32	17	28	21	1.96
66818585--66818748	71	2.3	71	100	0	328	35	17	28	18	1.94
66821827--66821889	29	2.2	28	81	16	67	50	4	17	26	1.66
66822352--66822485	45	3.0	45	88	1	187	21	16	28	33	1.95
66828326--66828357	15	2.1	15	100	0	64	43	18	0	37	1.51
66844939--66845055	40	2.9	40	81	0	153	48	15	23	12	1.79
66848905--66849351	49	9.1	49	95	0	786	29	27	9	33	1.88
66849143--66849227	27	3.3	27	63	21	74	30	27	7	35	1.83
66853376--66853419	19	2.3	19	88	4	61	45	11	0	43	1.40
66862540--66862564	2	12.5	2	100	0	50	52	0	0	48	1.00
66874972--66875191	51	4.3	51	76	8	198	29	15	23	32	1.95
66874972--66875209	102	2.3	101	80	5	239	28	15	23	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66884836--66885003	40	4.2	40	81	4	178	23	27	23	24	2.00
66890827--66891043	47	4.6	47	94	1	362	29	11	31	26	1.92
66890826--66891043	95	2.3	94	92	0	364	30	11	31	26	1.92
66890801--66891052	95	2.7	92	87	5	335	30	11	30	27	1.92
66891017--66891106	46	2.0	46	88	0	135	34	7	30	27	1.85
66891108--66891134	2	13.5	2	100	0	54	48	0	0	51	1.00
66894327--66894457	29	4.6	29	80	3	131	25	32	16	25	1.96
66900884--66900958	29	2.6	29	84	0	96	22	34	20	22	1.96
66900942--66901016	29	2.6	29	93	0	132	28	30	13	28	1.94
66907147--66907314	40	4.2	40	81	4	178	23	27	23	24	2.00
66910786--66910965	40	4.5	40	78	4	175	26	23	26	24	2.00
66910787--66910965	80	2.2	81	81	3	200	26	23	26	24	2.00
66910908--66910991	40	2.1	40	84	4	107	27	27	25	20	1.99
66910821--66910991	80	2.1	80	79	2	182	28	23	24	22	1.99
66913663--66913709	10	4.7	10	91	0	76	12	8	27	51	1.69
66928557--66928585	15	1.9	15	100	0	58	27	24	0	48	1.51
66929041--66929233	97	2.0	94	94	3	341	21	9	11	57	1.62
66930732--66930777	14	3.3	14	78	0	56	30	26	15	28	1.96
66931607--66931639	7	4.7	7	85	14	50	30	0	0	69	0.88
66931608--66931649	21	2.0	21	85	0	57	35	0	0	64	0.94
66940188--66940225	17	2.1	19	85	9	53	39	2	7	50	1.46
66940314--66940351	2	19.0	2	94	0	67	47	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66944404--66944455	23	2.2	25	82	6	63	32	0	3	63	1.12
66944394--66944467	33	2.2	34	83	11	91	27	1	5	66	1.22
66945696--66945738	21	2.1	21	87	12	63	51	0	2	46	1.13
66945790--66945948	80	2.0	80	89	1	246	25	20	5	48	1.70
66945998--66948186	547	4.0	547	99	0	4369	35	20	15	28	1.93
66951567--66951599	15	2.1	16	88	5	50	57	3	6	33	1.38
66952328--66952374	20	2.3	20	82	17	62	44	0	0	55	0.99
66952528--66952572	25	1.9	24	86	13	67	62	4	8	24	1.43
66953534--66953582	24	2.0	24	100	0	98	40	22	8	28	1.82
66954085--66954175	23	4.0	23	80	0	101	42	20	15	20	1.88
66954083--66954177	46	2.1	46	85	0	127	43	20	14	22	1.88
66954583--66954746	80	2.1	80	96	1	303	43	23	6	27	1.77
66962797--66962864	34	2.0	34	100	0	136	38	14	17	29	1.90
66972157--66972343	71	2.7	68	93	5	281	18	28	18	34	1.95
66972180--66972343	71	2.3	71	100	0	328	18	28	17	35	1.94
66972180--66972377	71	2.8	70	92	3	276	20	28	17	33	1.95
66979253--66979439	71	2.7	68	93	5	281	18	28	18	34	1.95
66979276--66979439	71	2.3	71	100	0	328	18	28	17	35	1.94
66979276--66979473	71	2.8	70	92	3	276	20	28	17	33	1.95
66993546--66993677	43	3.0	43	83	3	149	28	24	16	30	1.97
66996462--66996524	31	2.0	31	100	0	126	38	15	6	39	1.73
66996462--66996537	31	2.6	30	87	8	77	40	15	5	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67003952--67004098	43	3.4	44	74	9	124	30	21	16	31	1.95
67019156--67019213	18	3.2	18	80	0	62	43	12	22	22	1.86
67024236--67024403	40	4.2	40	83	3	196	23	21	27	27	1.99
67024236--67024403	80	2.1	79	86	5	239	23	21	27	27	1.99
67024640--67024681	22	1.9	22	85	9	59	33	9	14	42	1.78
67025823--67025936	40	2.8	40	75	7	106	30	23	21	24	1.99
67025918--67025981	18	3.6	18	76	0	65	43	12	18	25	1.85
67029432--67029479	18	2.7	18	83	9	62	41	16	22	18	1.90
67029863--67029949	27	3.2	27	85	0	111	41	21	11	25	1.87
67032517--67032647	30	4.5	30	86	8	171	32	13	25	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318