genome.fa.s2.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  211  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66397588--66397738	40	3.8	39	84	2	151	23	27	22	26	2.00
66397588--66397738	80	1.9	79	83	6	198	23	27	22	26	2.00
66398554--66398599	17	2.5	19	74	22	53	34	23	17	23	1.96
66402172--66402241	27	2.5	28	95	2	124	30	27	14	28	1.95
66408682--66408760	29	2.7	29	86	5	106	27	32	15	24	1.95
66409398--66409449	2	26.0	2	88	0	77	44	3	1	50	1.31
66410514--66410865	190	1.9	190	93	2	609	28	16	26	28	1.97
66415958--66415993	16	2.2	16	95	0	63	58	11	8	22	1.59
66438736--66438966	48	4.8	48	78	6	245	24	29	20	24	1.99
66438736--66438971	96	2.5	96	88	2	332	25	30	20	24	1.99
66444585--66444710	44	2.9	43	81	11	152	22	21	24	31	1.98
66444585--66444709	42	2.9	41	81	15	139	22	21	24	31	1.98
66445188--66445214	10	2.7	10	100	0	54	18	7	22	51	1.70
66445312--66445364	25	2.2	25	83	12	67	32	0	24	43	1.55
66450153--66450188	2	18.0	2	88	0	54	50	2	2	44	1.31
66450828--66450901	29	2.6	29	89	4	105	25	16	32	25	1.96
66458954--66459027	29	2.6	29	89	4	105	25	16	32	25	1.96
66462154--66462302	80	1.9	80	81	2	183	22	30	24	22	1.99
66462195--66462302	40	2.7	38	85	8	128	21	29	25	23	1.99
66466996--66467152	43	3.7	43	75	7	131	23	17	26	32	1.97
66469060--66469099	21	2.0	21	90	5	64	20	27	40	12	1.88
66471975--66472044	27	2.5	28	93	2	115	27	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66471975--66472056	27	3.0	27	84	8	69	28	15	25	30	1.96
66479913--66479982	27	2.5	28	93	2	115	27	14	28	30	1.95
66479913--66479994	27	3.0	27	84	8	69	28	15	25	30	1.96
66487920--66488020	28	3.5	30	82	6	118	29	14	26	28	1.95
66487949--66488024	29	2.7	28	76	13	75	30	14	26	28	1.95
66499185--66499333	80	1.9	80	81	2	183	22	30	24	22	1.99
66499226--66499333	40	2.7	38	85	8	128	21	29	25	23	1.99
66509947--66510181	71	3.3	71	98	0	452	34	17	28	19	1.95
66514287--66514343	23	2.4	25	80	14	66	36	3	15	43	1.64
66514985--66515024	21	2.0	19	85	9	53	40	0	17	42	1.49
66515266--66515383	48	2.5	47	87	4	157	16	19	21	42	1.89
66515500--66515685	18	10.3	18	73	9	110	36	11	14	37	1.83
66515516--66515679	36	4.6	34	74	8	130	34	12	15	37	1.84
66515567--66515685	54	2.2	54	82	5	134	35	13	14	36	1.85
66516411--66516448	20	2.0	19	85	10	51	15	52	21	10	1.72
66517942--66518039	5	18.2	5	76	19	83	19	4	1	75	1.02
66517945--66518038	9	9.3	9	69	28	57	19	4	1	75	1.03
66517954--66518039	6	14.3	6	77	9	77	18	4	1	75	1.04
66517944--66518039	11	8.8	11	75	17	85	18	4	1	76	1.01
66517950--66517999	26	2.0	25	88	4	73	16	4	2	78	1.00
66517942--66518039	38	2.6	37	85	10	128	19	4	1	75	1.02
66519874--66519914	21	2.0	21	85	0	55	56	9	24	9	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66531889--66531918	12	2.5	12	94	0	51	6	30	40	23	1.80
66532840--66532908	21	3.3	21	87	0	93	39	13	27	20	1.89
66536812--66536949	48	2.9	48	84	0	123	29	32	16	21	1.95
66536865--66536959	48	2.0	48	91	0	154	27	31	17	23	1.97
66548115--66548199	34	2.5	35	82	1	109	31	24	16	27	1.96
66548634--66548710	27	2.9	27	90	0	118	37	18	16	27	1.92
66548699--66548871	27	6.5	26	80	3	184	23	19	18	39	1.92
66548699--66548871	53	3.2	52	83	3	193	23	19	18	39	1.92
66553588--66553688	27	3.7	26	84	7	139	39	18	9	31	1.84
66553677--66553875	27	6.9	27	73	15	121	38	17	20	24	1.93
66553678--66553745	35	1.9	35	93	0	118	44	19	16	20	1.87
66553708--66553814	54	2.0	54	94	0	187	38	18	18	24	1.93
66554208--66554239	2	16.0	2	100	0	64	50	0	0	50	1.00
66554236--66554295	27	2.3	27	85	2	77	21	23	20	35	1.96
66554435--66554522	6	14.3	6	73	13	72	19	21	13	45	1.84
66554413--66554517	31	3.6	31	73	15	96	19	19	13	48	1.80
66554444--66554510	25	2.7	25	92	0	107	17	22	13	46	1.83
66556434--66556540	27	4.0	27	83	0	124	39	22	8	29	1.83
66556532--66556760	27	8.3	27	80	12	232	38	18	20	22	1.93
66556528--66556760	53	4.2	54	78	11	238	38	18	20	22	1.94
66556506--66556760	80	3.1	79	78	12	262	38	18	19	23	1.94
66556577--66556654	35	2.2	35	95	0	138	43	23	17	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66556565--66556681	62	1.9	62	90	0	189	39	22	18	19	1.93
66556616--66556789	54	3.2	54	79	8	183	37	18	18	24	1.93
66558673--66558814	40	3.5	40	82	1	124	27	24	26	21	1.99
66558711--66558840	40	3.3	39	78	11	147	23	24	26	24	2.00
66561377--66561544	40	4.2	40	80	7	162	23	26	23	26	2.00
66561393--66561544	80	1.9	80	83	5	200	23	26	23	26	2.00
66567597--66567640	2	22.0	2	85	0	61	50	2	4	43	1.35
66568268--66568341	29	2.6	29	86	4	96	27	16	31	25	1.96
66570744--66570775	13	2.5	13	94	0	55	50	28	6	15	1.68
66585837--66585888	25	2.1	25	89	3	79	25	19	23	32	1.97
66586095--66586319	27	8.3	27	83	5	285	25	21	17	35	1.95
66586094--66586307	54	4.0	54	91	0	320	25	21	18	34	1.96
66586271--66586545	54	5.1	55	78	7	258	29	9	22	39	1.85
66586189--66586505	81	3.9	81	80	10	233	27	12	21	38	1.90
66586298--66586533	81	2.9	80	86	2	310	29	8	21	41	1.82
66586297--66586533	27	8.8	27	84	3	253	29	8	21	40	1.82
66586322--66586558	81	2.9	81	82	3	190	30	8	21	39	1.82
66586498--66586702	81	2.5	81	81	1	196	38	9	20	31	1.84
66586527--66586702	27	6.5	27	85	2	210	39	9	20	30	1.84
66586706--66586884	27	6.7	27	78	5	175	30	9	19	40	1.83
66586527--66586734	54	3.9	54	84	0	191	38	9	21	30	1.84
66586706--66586857	80	1.9	81	90	1	243	29	9	20	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66586706--66586884	80	2.2	80	85	3	216	30	9	19	40	1.83
66592525--66592652	64	2.0	64	95	0	229	40	10	19	28	1.85
66593256--66593282	13	2.1	13	100	0	54	29	18	7	44	1.77
66601776--66601895	43	2.8	43	78	12	140	31	17	23	27	1.97
66603764--66603810	24	2.0	24	83	8	60	48	8	4	38	1.53
66603776--66603827	24	2.2	24	82	0	59	50	3	3	42	1.39
66608178--66608231	24	2.2	24	90	0	81	48	12	1	37	1.53
66608693--66608723	7	4.4	7	100	0	62	48	0	51	0	1.00
66608690--66608730	15	2.7	15	81	11	57	51	0	48	0	1.00
66609836--66609873	19	2.0	20	94	5	69	73	10	0	15	1.09
66616879--66616924	21	2.2	21	92	0	74	21	21	34	21	1.97
66624318--66624425	26	4.2	26	94	4	191	34	26	8	30	1.86
66636089--66636323	50	4.7	49	75	11	208	25	17	25	31	1.97
66636089--66636314	101	2.3	98	81	9	251	25	16	25	31	1.97
66647871--66648000	40	3.2	40	81	9	158	25	26	23	23	2.00
66647887--66648038	40	3.8	40	80	8	157	23	25	23	27	2.00
66650270--66650432	49	3.5	49	80	14	209	29	9	31	28	1.89
66650324--66650405	40	2.0	40	100	0	164	28	9	34	28	1.89
66650528--66650612	37	2.3	37	95	0	152	24	20	34	21	1.97
66652429--66652673	40	6.1	40	95	0	355	27	20	26	24	1.99
66652847--66653010	29	5.7	29	94	0	283	26	15	32	25	1.96
66656388--66656550	49	3.5	49	80	14	209	29	9	31	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66656442--66656523	40	2.0	40	100	0	164	28	9	34	28	1.89
66656646--66656730	37	2.3	37	95	0	152	24	20	34	21	1.97
66663697--66663872	51	3.6	47	81	9	199	25	18	25	31	1.97
66663693--66663878	101	1.9	101	91	1	311	24	18	25	30	1.98
66663971--66664022	25	2.0	26	81	11	61	40	1	21	36	1.64
66668521--66668589	25	2.7	25	80	8	68	30	17	10	42	1.82
66668734--66668776	18	2.4	18	96	0	77	13	16	2	67	1.33
66673560--66673714	40	3.8	40	74	8	114	27	17	23	31	1.97
66673638--66673740	44	2.3	43	82	9	111	28	18	22	31	1.97
66674322--66674364	19	2.2	20	87	4	61	27	2	20	48	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318