genome.fa.s2.2.7.7.80.10.50.1000.298.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  298  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93353212--93353291	10	8.0	10	73	22	53	76	0	3	20	0.94
93357026--93357083	27	2.1	27	81	12	66	48	12	1	37	1.51
93378192--93378302	3	37.0	3	98	0	213	65	0	0	33	0.99
93380263--93380298	9	4.0	9	92	0	63	30	0	25	44	1.54
93386087--93386166	42	1.9	42	92	0	133	30	12	23	33	1.92
93387092--93387274	90	2.0	90	84	2	233	38	23	7	30	1.83
93387235--93387286	23	2.3	23	86	3	70	51	21	5	21	1.68
93387247--93387297	23	2.2	23	100	0	102	52	19	3	23	1.62
93387352--93387411	20	3.0	19	82	7	66	35	6	1	56	1.35
93387458--93387490	9	3.3	10	91	8	50	12	9	0	78	0.95
93396091--93396115	13	1.9	13	100	0	50	40	0	0	60	0.97
93401747--93401781	5	6.8	5	90	3	52	17	5	0	77	0.96
93401747--93401783	15	2.4	16	86	9	58	18	8	0	72	1.08
93405593--93405638	3	15.3	3	100	0	92	34	0	0	65	0.93
93405785--93405829	21	2.1	21	84	12	56	37	0	2	60	1.09
93410377--93410424	21	2.2	21	81	7	51	33	6	10	50	1.62
93410387--93410427	21	2.0	21	100	0	82	29	4	9	56	1.53
93420141--93420192	22	2.4	22	93	0	86	57	19	5	17	1.59
93429011--93429216	93	2.3	89	83	5	252	42	20	7	29	1.79
93429487--93429539	22	2.3	24	74	6	56	30	9	3	56	1.49
93429551--93429637	10	9.0	9	72	13	57	36	2	2	58	1.23
93429573--93429627	19	3.1	18	76	7	58	30	1	1	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93429567--93429637	28	2.5	29	81	9	92	36	1	1	60	1.14
93439278--93439309	5	6.6	5	92	7	57	81	0	0	18	0.70
93439279--93439309	9	3.3	9	95	4	53	80	0	0	19	0.71
93441241--93441285	21	2.1	21	95	0	81	37	15	22	24	1.93
93442619--93442655	13	2.8	13	87	4	56	43	0	13	43	1.44
93442670--93442708	10	3.9	10	89	0	60	20	12	0	66	1.24
93445584--93445646	24	2.6	24	92	0	108	41	17	7	33	1.79
93446132--93446157	2	13.0	2	100	0	52	50	0	0	50	1.00
93456287--93456320	2	17.5	2	93	6	61	50	0	0	50	1.00
93456396--93456428	17	1.9	17	100	0	66	72	0	27	0	0.85
93481921--93481978	30	1.9	29	83	13	73	62	6	0	31	1.22
93487450--93487492	22	2.0	22	81	9	52	58	2	9	30	1.42
93494921--93494989	28	2.4	29	90	2	104	26	14	31	27	1.95
93500353--93500521	44	3.6	47	73	13	134	23	29	18	28	1.98
93500406--93500621	47	4.7	44	76	12	157	23	29	19	28	1.98
93500961--93501017	30	1.9	30	92	0	96	28	22	14	35	1.93
93504249--93504363	43	2.9	40	88	7	155	26	20	32	20	1.98
93504438--93504503	30	2.2	31	83	2	80	59	18	4	18	1.55
93504760--93504805	21	2.2	21	84	0	56	2	50	19	28	1.60
93508062--93508150	9	10.0	9	80	2	108	38	2	12	47	1.54
93508062--93508160	27	3.7	27	87	1	119	38	2	13	46	1.54
93508263--93508318	15	3.8	15	78	21	73	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93508495--93508561	24	2.8	24	84	10	93	46	7	19	26	1.76
93508849--93508890	21	2.0	21	86	9	59	66	0	0	33	0.92
93512612--93512641	14	2.1	15	93	6	53	36	0	13	50	1.42
93515676--93515768	28	3.2	28	76	11	84	24	0	26	48	1.51
93516058--93516315	41	6.6	41	76	12	222	25	18	23	32	1.97
93516093--93516233	72	2.0	71	85	4	194	26	17	24	31	1.97
93521830--93521894	27	2.3	28	80	12	80	36	0	0	63	0.95
93521830--93521894	28	2.3	28	76	10	71	36	0	0	63	0.95
93523304--93523339	2	18.0	2	94	0	63	47	2	0	50	1.15
93539425--93539467	20	2.2	19	83	4	50	34	2	2	60	1.22
93543264--93543322	24	2.5	24	100	0	118	40	10	6	42	1.65
93546098--93546122	2	12.5	2	100	0	50	52	0	0	48	1.00
93550045--93550072	6	4.7	6	100	0	56	32	0	67	0	0.91
93555851--93555888	18	2.1	18	85	9	51	13	15	10	60	1.59
93569938--93569979	19	2.2	20	82	4	50	50	7	16	26	1.71
93575889--93575992	26	4.0	26	90	5	147	34	6	22	36	1.80
93575889--93575992	52	2.0	52	90	0	163	34	6	22	36	1.80
93582979--93583079	26	3.9	26	90	0	166	33	5	23	36	1.79
93595115--93595165	26	2.0	26	84	0	66	29	3	7	58	1.44
93595224--93595266	22	2.1	19	87	12	59	53	0	6	39	1.28
93595334--93595390	24	2.5	22	83	11	62	43	0	1	54	1.10
93595334--93595526	79	2.3	81	85	11	259	47	1	2	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93595366--93595539	79	2.2	80	89	7	271	48	1	2	47	1.27
93595401--93595512	21	4.2	27	64	27	69	49	2	2	45	1.30
93595504--93595540	14	2.7	14	91	4	58	51	0	0	48	1.00
93596377--93596414	19	2.0	19	100	0	76	57	26	10	5	1.53
93597572--93597793	50	4.4	50	94	1	356	36	17	20	26	1.94
93597769--93597886	31	3.8	31	91	0	200	27	17	27	27	1.98
93597905--93598027	47	2.6	48	83	5	142	30	13	26	30	1.93
93599729--93599770	20	2.0	22	86	9	61	42	0	0	57	0.99
93600762--93600800	21	1.9	20	94	5	69	61	5	0	33	1.18
93600762--93600815	20	2.6	21	82	5	65	59	3	1	35	1.26
93604174--93604217	18	2.4	19	80	3	54	0	11	18	70	1.16
93613776--93613945	94	1.8	93	90	1	277	32	12	7	47	1.69
93620238--93620336	48	2.1	48	98	0	189	20	21	13	45	1.84
93635424--93635573	56	2.7	55	78	5	167	47	6	15	30	1.71
93643428--93643479	24	2.2	24	85	0	68	53	9	3	32	1.51
93644920--93644959	8	5.0	8	100	0	80	37	0	25	37	1.56
93645311--93645373	30	2.1	29	83	13	76	53	1	11	33	1.46
93645589--93645614	2	13.0	2	100	0	52	50	0	0	50	1.00
93647137--93647171	18	1.9	18	100	0	70	17	17	37	28	1.92
93653541--93653592	22	2.4	21	81	9	61	59	21	1	17	1.47
93656411--93656460	4	12.5	4	78	0	55	4	18	52	26	1.63
93656411--93656467	20	2.8	20	89	0	78	7	19	49	24	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93656481--93656563	2	41.5	2	97	0	157	1	0	49	49	1.08
93663246--93663281	18	2.0	18	100	0	72	55	11	11	22	1.66
93672941--93672988	25	1.9	25	83	8	62	31	18	18	31	1.95
93677454--93677510	29	2.0	29	96	0	105	36	8	15	38	1.79
93678233--93678272	21	1.9	21	94	0	71	20	27	12	40	1.88
93681481--93681546	22	3.1	22	66	16	66	15	33	30	21	1.94
93681464--93681546	42	2.0	42	92	0	139	18	31	28	21	1.97
93684290--93684380	46	2.0	46	91	0	146	41	29	13	15	1.85
93688940--93689042	29	3.6	29	92	2	154	26	32	15	26	1.96
93693630--93693693	27	2.4	25	73	16	58	1	40	0	57	1.08
93693687--93693746	25	2.4	25	80	8	68	1	41	0	56	1.09
93695604--93695657	6	9.3	6	91	4	85	16	0	1	81	0.78
93698911--93698955	18	2.4	19	92	3	74	44	0	2	53	1.13
93705821--93705848	5	5.6	5	100	0	56	17	0	0	82	0.68
93709681--93710050	43	8.6	43	89	1	562	31	31	24	12	1.92
93710048--93710188	38	3.7	38	87	0	192	32	26	19	20	1.97
93710052--93710206	76	2.0	78	83	2	197	32	27	19	20	1.97
93711163--93711200	2	19.0	2	100	0	76	50	0	0	50	1.00
93715754--93715780	14	1.9	14	100	0	54	55	0	44	0	0.99
93719683--93719732	26	1.9	26	100	0	100	38	24	6	32	1.79
93730559--93730678	38	3.1	38	81	9	136	24	22	24	29	1.99
93736259--93736314	29	1.9	29	86	13	80	71	0	8	19	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93736405--93736445	21	2.0	21	85	0	55	29	26	14	29	1.95
93740209--93740247	6	6.5	6	84	0	51	48	15	15	20	1.81
93741120--93741151	13	2.5	13	100	0	64	34	21	15	28	1.94
93745643--93745769	35	3.6	35	91	2	193	40	31	11	16	1.85
93750667--93750710	22	2.0	22	81	4	52	38	6	2	52	1.41
93754872--93754925	28	1.9	28	100	0	108	44	27	11	16	1.82
93762629--93762653	7	3.6	7	100	0	50	88	0	0	12	0.53
93763063--93763089	3	9.0	3	100	0	54	33	33	0	33	1.58
93771936--93771979	18	2.4	18	88	0	61	45	0	2	52	1.13
93778830--93778880	25	2.1	24	82	10	59	3	23	0	72	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318