Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  294  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92436676--92436765
22
4.1
21
74
18
78
43
0
1
55
1.07
92436700--92436743
23
1.9
23
90
0
70
40
0
2
56
1.11
92436691--92436763
21
3.3
23
80
10
66
42
0
1
56
1.08
92437027--92437075
18
2.8
18
75
15
57
59
0
0
40
0.98
92437244--92437305
27
2.3
26
80
5
70
50
3
1
45
1.27
92437244--92437305
26
2.3
27
83
2
72
50
3
1
45
1.27
92437435--92437478
21
2.1
21
84
16
56
36
0
0
63
0.95
92437580--92437618
18
2.2
18
90
0
60
61
0
0
38
0.96
92442484--92442525
14
3.3
13
78
15
52
38
0
2
59
1.10
92442512--92442578
31
2.0
34
86
11
95
43
1
0
55
1.09
92442547--92442634
19
4.6
19
76
10
65
44
1
2
52
1.21
92442534--92442646
29
3.9
28
76
5
109
42
1
1
53
1.21
92442548--92442636
10
9.4
9
74
13
63
43
1
2
52
1.20
92443312--92443382
37
1.9
36
85
2
97
50
4
2
42
1.36
92443407--92443487
21
3.8
22
76
15
80
53
1
0
45
1.08
92443407--92443493
23
3.9
23
75
14
76
54
1
0
44
1.07
92443480--92443531
18
2.9
18
77
5
52
65
1
3
28
1.21
92443575--92443613
8
4.8
8
93
6
69
76
0
10
12
1.01
92448337--92448466
65
2.0
65
100
0
260
33
15
13
36
1.87
92452725--92452839
54
2.1
55
80
10
132
34
23
13
28
1.92
92455020--92455161
3
49.3
3
68
20
81
30
4
0
64
1.20
92455034--92455068
17
2.1
17
94
0
61
34
2
0
62
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92455020--92455164
14
10.1
14
70
23
72
30
4
0
64
1.19
92455041--92455164
17
7.5
17
75
14
66
31
3
0
64
1.15
92455054--92455153
38
2.8
36
81
11
107
30
4
1
65
1.18
92455142--92455192
26
1.9
27
88
4
77
29
7
0
62
1.23
92455669--92455699
11
2.7
11
95
5
53
38
0
6
54
1.26
92455683--92455742
22
2.7
23
73
19
65
31
6
5
56
1.47
92455736--92455790
23
2.4
22
82
11
65
41
14
1
41
1.56
92455783--92455829
2
24.0
2
91
4
78
48
2
0
48
1.13
92460541--92460605
32
2.0
32
100
0
130
24
21
18
35
1.96
92464852--92464891
2
20.0
2
100
0
80
50
0
0
50
1.00
92469957--92470060
36
2.8
36
81
8
111
61
6
6
25
1.46
92475035--92475082
3
16.0
3
82
8
53
62
2
0
35
1.07
92475166--92475399
3
76.3
3
72
13
86
61
3
7
26
1.40
92475180--92475244
14
4.8
13
75
17
62
58
3
9
29
1.44
92475226--92475372
42
3.5
41
72
8
118
66
2
8
22
1.31
92476098--92476130
2
16.5
2
100
0
66
51
0
0
48
1.00
92481218--92481252
12
3.0
12
91
4
54
34
2
0
62
1.10
92481372--92481436
30
2.2
30
94
0
112
60
15
1
23
1.44
92481466--92481508
22
2.0
22
85
0
59
55
9
11
23
1.64
92486367--92486446
35
2.3
35
80
8
83
35
2
2
60
1.24
92486426--92486481
20
2.7
20
83
5
67
30
3
7
58
1.42
92490886--92490929
22
2.0
22
86
13
63
52
6
4
36
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92491409--92491434
5
5.2
5
100
0
52
38
0
23
38
1.55
92498547--92498654
26
4.2
26
92
0
180
32
6
24
37
1.81
92502244--92502989
205
3.7
205
94
0
1286
31
18
21
28
1.96
92502821--92503328
256
2.0
255
83
6
643
32
16
22
28
1.96
92503614--92503697
19
4.7
19
80
14
108
36
8
16
38
1.79
92503664--92503689
5
5.2
5
100
0
52
38
0
23
38
1.55
92505880--92505920
4
10.5
4
84
5
57
75
2
2
19
1.03
92505883--92505916
11
3.0
11
91
4
50
76
2
2
17
1.04
92505880--92505921
15
2.7
15
88
3
57
76
2
2
19
1.01
92507317--92507384
27
2.4
28
77
22
70
27
4
1
66
1.20
92507574--92507656
14
6.0
14
73
18
66
33
3
3
59
1.32
92522220--92522628
44
9.3
44
92
0
667
27
15
32
25
1.95
92522856--92522896
4
10.5
4
84
5
57
75
2
2
19
1.03
92522859--92522892
11
3.0
11
91
4
50
76
2
2
17
1.04
92522856--92522897
15
2.7
15
88
3
57
76
2
2
19
1.01
92524297--92524355
22
2.4
25
81
18
72
25
5
1
67
1.20
92524544--92524605
14
4.1
14
80
12
61
37
4
1
56
1.30
92524543--92524590
14
3.4
14
85
5
62
37
6
0
56
1.25
92526733--92526787
19
2.8
20
75
10
69
60
7
0
32
1.24
92528537--92528589
21
2.6
21
84
3
63
32
0
3
64
1.12
92528529--92528610
20
4.2
20
77
10
73
31
1
4
62
1.24
92531973--92532013
20
2.0
20
100
0
82
29
12
14
43
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92536167--92536210
19
2.4
18
85
7
54
20
6
0
72
1.07
92537515--92538497
326
3.0
326
99
0
1948
26
22
16
34
1.95
92544018--92544050
8
4.2
8
88
3
50
39
0
9
51
1.34
92553067--92553106
20
2.0
20
95
0
71
25
22
15
37
1.93
92558071--92558107
17
2.2
17
100
0
74
27
5
10
56
1.55
92559468--92559544
29
2.6
28
77
18
77
22
2
3
71
1.15
92559491--92559560
7
10.1
7
70
25
51
22
1
2
72
1.05
92559489--92559548
22
2.7
23
77
15
63
25
1
1
71
1.04
92559468--92559547
41
2.0
40
82
7
99
22
2
3
71
1.14
92559464--92559565
30
3.3
29
73
20
82
21
2
3
71
1.16
92559616--92559657
12
3.5
12
80
9
50
19
9
4
66
1.38
92559692--92559758
12
5.3
12
75
10
53
5
7
5
80
1.02
92582250--92582283
16
2.1
17
88
5
52
17
20
14
47
1.83
92591101--92591134
16
2.1
17
88
5
52
20
20
11
47
1.81
92594519--92594591
5
14.8
5
72
18
55
38
6
19
35
1.78
92594527--92594591
20
3.2
20
88
0
85
38
7
20
33
1.81
92594638--92594707
24
2.8
25
87
8
90
28
22
24
24
1.99
92594638--92594714
25
3.1
24
85
9
93
32
20
22
24
1.98
92594662--92594720
25
2.4
26
76
18
63
30
18
23
27
1.98
92594926--92595009
31
2.7
31
96
1
152
32
17
26
23
1.97
92602610--92602656
20
2.3
20
100
0
94
36
10
19
34
1.86
92602703--92602780
25
3.1
24
85
10
95
33
21
20
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92602728--92602786
25
2.4
26
78
18
72
30
20
22
27
1.98
92602991--92603076
31
2.8
31
92
1
147
32
17
25
24
1.97
92604220--92604267
6
8.3
6
88
9
73
14
2
0
83
0.74
92604220--92604281
22
2.7
24
82
14
85
16
3
1
79
0.95
92604226--92604280
28
1.9
28
88
3
83
14
1
1
81
0.85
92607355--92607486
61
2.2
58
89
4
192
52
3
3
40
1.35
92608187--92608248
30
2.1
30
100
0
124
30
17
16
35
1.92
92609213--92609312
39
2.6
38
84
3
119
49
10
4
37
1.55
92612342--92612431
27
3.3
27
85
3
119
40
17
10
32
1.83
92612342--92612448
54
2.0
54
81
7
128
38
20
10
30
1.86
92612437--92612701
27
9.8
27
85
1
253
29
22
7
40
1.81
92612437--92612701
54
4.9
54
86
1
325
29
22
7
40
1.81
92612445--92612700
81
3.2
80
88
3
325
30
21
7
41
1.80
92612653--92612902
27
9.2
27
75
11
107
40
20
7
32
1.81
92612461--92612728
54
5.0
54
83
3
270
31
21
6
40
1.79
92612445--92612730
81
3.5
79
85
4
320
31
21
6
39
1.80
92612680--92612818
54
2.6
51
78
10
136
41
22
6
29
1.78
92612491--92612828
81
4.2
80
79
7
211
34
21
7
36
1.81
92612961--92613053
27
3.4
27
88
2
125
35
20
24
19
1.96
92614300--92614356
9
5.9
9
73
15
51
35
8
21
35
1.84
92614298--92614360
20
3.2
20
95
0
117
36
12
19
31
1.89
92614415--92614534
23
5.1
23
88
4
186
29
22
20
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92614414--92614541
24
5.4
23
87
5
184
29
21
21
26
1.99
92614413--92614534
47
2.6
47
93
0
217
30
22
20
27
1.98
92614748--92614811
31
2.1
31
90
0
101
35
15
23
25
1.94
92615099--92615148
21
2.4
21
96
0
91
12
8
14
66
1.45
92619150--92619179
5
5.8
5
92
7
51
80
0
0
20
0.72
92619150--92619179
11
2.9
10
95
5
51
80
0
0
20
0.72
92619150--92619179
16
1.9
15
93
6
51
80
0
0
20
0.72
92621726--92621776
14
3.6
14
75
15
52
19
0
43
37
1.51
92621712--92621808
36
2.7
37
84
6
128
20
1
38
40
1.60
92621731--92621785
29
1.9
28
82
10
67
20
0
41
38
1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318