genome.fa.s2.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  139  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42539321--42539353	11	3.1	11	91	4	50	48	30	0	21	1.50
42544675--42544838	40	4.1	40	81	3	195	23	21	28	26	1.99
42552551--42552623	29	2.5	29	97	0	137	27	15	30	27	1.96
42552547--42552653	29	3.7	30	87	3	114	26	14	32	26	1.95
42552714--42552742	2	14.5	2	100	0	58	48	0	0	51	1.00
42558152--42558252	28	3.5	28	86	6	114	29	13	26	29	1.94
42565403--42565566	40	4.1	40	81	3	195	24	21	28	25	1.99
42573014--42573200	40	4.7	40	80	4	171	29	23	25	21	1.99
42573014--42573167	80	1.9	80	85	0	209	28	22	25	22	1.99
42573018--42573200	80	2.3	80	80	0	204	28	24	25	21	1.99
42575811--42575921	27	4.1	27	80	3	125	30	18	19	31	1.96
42575903--42576297	27	14.7	27	79	7	122	41	22	8	28	1.82
42575954--42576161	54	3.9	55	84	5	273	40	25	7	26	1.81
42575954--42576269	54	5.9	54	79	7	268	43	22	6	27	1.78
42575954--42576295	81	4.2	81	78	6	300	42	22	7	27	1.80
42576532--42576650	41	2.9	41	88	0	184	22	26	27	23	2.00
42578092--42578263	93	1.8	93	92	2	292	27	30	21	20	1.98
42578055--42578259	46	4.4	45	81	8	234	27	30	21	20	1.98
42578093--42578279	46	4.0	46	71	20	131	27	29	20	21	1.98
42580640--42580717	15	5.4	15	72	13	65	58	12	17	10	1.61
42580678--42580717	14	2.8	14	84	3	53	60	7	20	12	1.56
42583652--42583825	45	3.8	45	80	9	208	28	30	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42583659--42583829	93	1.8	92	94	1	306	27	30	21	21	1.98
42583660--42583845	46	4.0	46	72	19	138	27	30	20	21	1.98
42588154--42588212	26	2.2	26	93	3	100	37	16	11	33	1.86
42588206--42588405	107	1.9	107	86	2	285	42	23	8	26	1.82
42588154--42588537	27	14.3	27	80	4	267	40	20	9	29	1.84
42588793--42588906	41	2.8	40	89	5	174	22	21	28	27	1.99
42589050--42589378	158	2.1	158	96	0	606	20	20	21	36	1.95
42599513--42599537	13	1.9	13	100	0	50	48	28	8	16	1.74
42601860--42602031	94	1.8	94	87	2	256	28	16	29	25	1.97
42601860--42602043	47	3.9	47	79	7	187	28	16	29	25	1.97
42602730--42602824	42	2.3	42	89	5	140	12	25	35	26	1.92
42602747--42602835	42	2.1	42	91	2	144	13	26	32	26	1.94
42608478--42608660	79	2.3	81	84	7	232	26	27	21	24	1.99
42608457--42608660	40	5.1	40	81	8	238	25	27	21	24	1.99
42609892--42609925	10	3.4	10	95	0	59	0	14	0	85	0.60
42609893--42609928	14	2.6	14	91	4	56	0	13	0	86	0.58
42609844--42609976	63	2.1	63	81	4	151	15	18	11	54	1.70
42612769--42612899	29	4.6	29	88	1	156	29	15	31	23	1.95
42612770--42612890	57	2.1	58	85	1	163	32	15	28	23	1.95
42620355--42620455	28	3.5	28	86	6	114	29	13	26	29	1.94
42623716--42623846	29	4.5	29	89	0	163	29	16	31	22	1.96
42628629--42628690	32	1.9	33	83	9	83	35	24	19	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42632559--42632886	164	2.0	164	93	0	566	36	15	16	31	1.90
42633390--42633446	28	2.0	28	100	0	114	26	28	7	38	1.82
42636314--42636371	28	2.1	28	96	0	107	32	22	12	32	1.91
42646184--42646305	40	3.0	40	85	2	156	25	20	26	27	1.99
42650185--42650266	26	3.2	24	78	16	76	23	7	2	67	1.28
42654122--42654153	15	2.1	16	88	11	50	18	12	6	62	1.50
42658433--42658678	113	2.2	113	90	3	388	28	25	19	26	1.99
42658835--42658883	22	2.2	22	92	0	80	34	30	20	14	1.92
42658850--42658897	22	2.2	22	81	7	53	39	22	25	12	1.89
42659430--42659471	17	2.3	19	92	8	70	26	45	19	9	1.80
42663636--42663746	24	4.6	24	90	3	152	37	23	15	23	1.93
42663614--42663749	24	5.7	24	84	8	136	36	22	15	26	1.94
42669732--42669914	40	4.6	39	78	10	176	26	27	21	24	1.99
42669760--42669868	38	2.8	39	87	5	157	26	27	20	25	1.99
42669709--42669911	78	2.6	79	78	9	193	27	26	20	25	1.99
42678159--42678321	39	4.2	39	91	0	263	23	33	20	22	1.97
42689171--42689333	39	4.2	39	89	0	245	23	32	20	22	1.98
42692613--42692714	39	2.6	40	93	1	170	26	28	20	24	1.99
42692585--42692765	79	2.3	80	80	7	199	27	27	20	24	1.99
42692566--42692765	40	5.0	40	79	8	203	26	27	21	25	1.99
42695075--42695108	17	1.9	17	88	5	50	29	41	23	5	1.78
42695692--42695738	23	2.0	23	95	0	85	46	14	29	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42698178--42698359	91	2.0	91	97	0	346	26	29	18	25	1.98
42702174--42702216	22	1.9	23	90	4	70	23	53	2	20	1.57
42713959--42714129	40	4.3	40	88	5	224	25	26	21	26	2.00
42713959--42714129	79	2.2	79	85	6	222	25	26	21	26	2.00
42720610--42720759	40	3.8	40	78	8	139	26	22	28	23	1.99
42725231--42725458	40	5.7	40	93	3	388	25	27	22	24	2.00
42725198--42725454	80	3.2	80	92	3	405	24	27	22	24	2.00
42732101--42732283	39	4.6	39	87	0	240	24	22	30	22	1.99
42739534--42739716	39	4.6	39	87	0	240	24	22	30	22	1.99
42742285--42742493	53	3.9	53	78	3	211	38	16	24	20	1.93
42746617--42746670	26	2.1	26	96	0	99	42	27	16	12	1.85
42749691--42749737	24	2.0	24	100	0	94	38	12	6	42	1.69
42758865--42759017	39	3.9	39	92	0	243	24	20	31	23	1.98
42758866--42759048	39	4.6	39	88	0	240	24	22	30	22	1.99
42758872--42759086	78	2.7	79	81	5	177	25	22	30	22	1.99
42773800--42773949	38	3.9	38	92	2	246	24	20	30	24	1.99
42773801--42773981	77	2.3	78	90	1	274	23	22	30	23	1.99
42773801--42773981	38	4.6	39	88	2	240	23	22	30	23	1.99
42780261--42780413	39	3.9	39	93	0	252	24	20	31	24	1.98
42780262--42780444	39	4.6	39	90	0	249	24	21	30	23	1.99
42780268--42780482	78	2.7	79	82	5	186	25	21	30	22	1.99
42788209--42788389	77	2.3	78	88	3	258	24	22	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42788209--42788389	38	4.6	39	87	3	231	24	22	29	23	1.99
42796139--42796252	39	2.9	39	93	1	183	23	20	31	24	1.98
42796146--42796288	39	3.6	40	87	0	128	22	22	31	23	1.98
42803086--42803212	39	3.2	39	89	1	182	24	18	30	25	1.98
42803086--42803243	39	4.0	39	86	0	181	24	20	30	24	1.99
42803086--42803243	79	2.0	79	83	2	201	24	20	30	24	1.99
42816775--42816831	28	2.0	28	96	0	105	36	15	17	29	1.91
42825481--42825559	23	3.4	23	100	0	158	17	7	48	26	1.74
42829751--42829991	43	5.6	43	96	0	446	31	34	24	9	1.88
42829984--42830107	38	3.2	38	83	2	140	28	25	22	23	1.99
42833760--42833873	45	2.6	45	82	10	121	26	27	21	25	1.99
42834241--42834280	16	2.5	16	95	0	71	22	27	32	17	1.96
42834205--42834322	59	2.0	59	88	0	173	27	31	25	15	1.95
42834255--42834361	43	2.5	43	89	0	160	28	31	26	14	1.94
42834342--42834382	16	2.6	16	92	0	73	29	26	34	9	1.88
42834305--42834425	59	2.1	59	90	0	188	31	30	26	11	1.91
42834196--42834468	102	2.7	102	87	2	404	29	31	25	13	1.94
42834358--42834477	43	2.8	43	94	0	213	31	30	26	11	1.92
42837451--42837604	40	3.8	40	86	4	211	24	22	27	25	2.00
42839397--42839523	40	3.2	40	85	3	177	25	22	26	25	2.00
42842599--42842658	30	2.0	30	83	6	77	40	11	25	23	1.88
42843304--42843501	100	2.0	100	93	0	342	26	19	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42843308--42843495	49	3.8	49	83	2	250	27	18	26	28	1.98
42849853--42850059	80	2.6	80	80	4	220	26	21	25	26	2.00
42849852--42850059	40	5.2	39	81	3	191	26	21	25	25	2.00
42855798--42855866	15	4.6	15	83	0	84	11	17	13	57	1.64
42855789--42855876	30	3.0	30	81	8	99	10	17	15	56	1.66
42859695--42859840	40	3.7	40	88	2	197	23	22	26	27	2.00
42868137--42868314	40	4.5	40	82	3	191	21	22	29	26	1.99
42873056--42873088	16	2.1	16	94	0	57	45	21	21	12	1.84
42877458--42877657	41	4.9	41	82	6	237	36	17	21	25	1.94
42877490--42877657	81	2.1	81	84	5	214	36	18	20	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318