genome.fa.s2.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  162  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49988186--49988369	40	4.6	40	79	6	203	26	23	25	25	2.00
49988186--49988369	80	2.3	80	84	3	228	26	23	25	25	2.00
49989785--49990019	6	38.8	6	75	17	211	20	16	14	48	1.80
49989769--49990008	73	3.1	73	86	8	302	20	17	14	47	1.82
49992009--49992499	27	18.2	27	85	3	623	27	22	9	40	1.85
49992504--49992699	27	7.3	27	84	0	239	35	18	19	25	1.95
49994037--49994177	40	3.5	40	77	9	128	23	23	27	25	2.00
49994309--49994492	40	4.6	40	77	6	194	25	22	25	26	2.00
49993943--49994452	275	1.9	276	88	2	783	25	16	26	31	1.97
49994309--49994492	80	2.3	80	83	3	219	25	22	25	26	2.00
49998693--49998895	47	4.3	47	91	2	291	32	8	30	28	1.88
50006852--50007035	40	4.6	40	80	6	212	26	23	25	25	2.00
50006852--50007035	80	2.3	80	85	3	237	26	23	25	25	2.00
50008451--50008685	6	38.8	6	75	17	211	20	16	13	48	1.80
50008435--50008674	73	3.1	73	86	8	293	20	17	14	47	1.82
50010679--50011196	27	19.2	27	86	3	641	27	22	9	40	1.85
50011201--50011396	27	7.3	27	82	0	230	35	18	19	26	1.95
50011595--50011677	27	3.1	26	84	5	103	19	20	21	38	1.93
50011764--50011822	22	2.7	22	81	0	64	20	25	22	32	1.98
50012740--50012880	40	3.5	40	77	9	128	24	24	26	24	2.00
50016385--50016486	29	3.5	29	90	0	150	27	15	33	23	1.95
50021900--50022117	40	5.5	40	93	3	354	22	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50030392--50030600	40	5.3	40	92	2	334	22	22	28	26	1.99
50032455--50032579	45	2.9	44	86	4	166	24	30	20	24	1.99
50032581--50032855	38	7.1	38	88	2	370	30	24	22	22	1.99
50032581--50032851	116	2.3	115	88	1	382	29	25	22	22	1.99
50033135--50033218	43	1.9	44	87	2	125	25	32	20	22	1.98
50037495--50037643	40	3.7	40	83	5	210	20	23	28	28	1.99
50045584--50045733	41	3.7	41	85	1	221	20	23	28	28	1.99
50047482--50047648	40	4.2	40	81	3	187	25	27	21	25	1.99
50055559--50055726	40	4.2	40	79	2	178	26	26	22	25	2.00
50058083--50058305	40	5.6	40	91	1	360	24	22	26	25	2.00
50063793--50063902	44	2.5	43	88	7	159	25	15	25	33	1.95
50063793--50063937	44	3.3	43	81	10	154	26	16	24	33	1.96
50065038--50065143	53	2.0	53	98	0	203	19	20	33	26	1.97
50071626--50071738	43	2.6	42	81	5	129	24	18	25	30	1.98
50071546--50071746	44	4.6	44	70	14	141	23	19	25	31	1.98
50072584--50072626	21	2.0	21	100	0	86	32	4	23	39	1.75
50072590--50072634	12	4.0	12	77	16	60	33	6	20	40	1.78
50073714--50073792	39	2.0	39	90	0	122	44	21	5	29	1.73
50076363--50076434	29	2.6	29	86	4	94	23	15	34	26	1.94
50076380--50076441	29	2.2	29	91	2	99	24	12	35	27	1.92
50082582--50082614	18	1.9	17	88	11	50	45	6	15	33	1.70
50084791--50084828	16	2.4	16	86	0	58	44	21	23	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50093942--50094029	45	2.0	46	84	8	119	22	29	19	28	1.98
50096162--50096251	34	2.6	34	84	7	110	22	24	21	32	1.98
50098300--50098347	23	2.1	23	96	0	87	43	6	18	31	1.75
50105398--50105429	15	2.2	15	94	5	57	71	0	28	0	0.86
50106926--50107080	43	3.7	43	69	14	124	29	27	18	25	1.98
50107561--50107636	34	2.2	34	88	4	109	23	23	21	31	1.98
50109685--50109732	23	2.1	23	96	0	87	43	6	18	31	1.75
50116783--50116814	15	2.2	15	94	5	57	71	0	28	0	0.86
50118311--50118465	43	3.7	43	69	14	124	29	27	18	25	1.98
50120243--50120364	47	2.6	47	93	0	208	37	13	22	26	1.91
50120343--50120593	54	4.6	54	85	3	326	37	16	23	23	1.94
50120707--50120739	16	2.0	17	94	5	59	42	3	18	36	1.66
50123582--50123622	21	2.0	20	95	4	73	26	0	24	48	1.51
50126624--50126664	21	2.0	20	95	4	73	26	0	24	48	1.51
50130847--50131180	49	6.9	49	92	2	559	34	8	27	29	1.87
50130847--50131180	96	3.5	96	95	0	578	34	8	27	29	1.87
50130846--50131185	145	2.4	144	93	2	567	34	8	27	29	1.87
50131172--50131275	48	2.2	48	98	0	199	33	5	27	32	1.81
50131315--50131405	37	2.4	37	96	1	164	23	18	32	25	1.97
50133305--50133605	40	7.6	40	86	5	308	25	20	27	26	1.99
50137381--50137763	49	7.9	49	93	2	657	34	9	27	29	1.87
50137380--50137763	96	4.0	96	95	1	678	34	9	27	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50137380--50137768	145	2.7	145	92	3	651	34	8	26	29	1.87
50137624--50137759	47	2.9	44	91	4	146	32	9	28	29	1.89
50137755--50137858	48	2.2	48	98	0	199	33	5	27	32	1.81
50137906--50137988	37	2.2	37	97	0	157	24	18	34	22	1.96
50145284--50145314	16	1.9	16	93	0	53	35	25	12	25	1.92
50147862--50147973	27	4.1	27	82	12	131	16	24	22	37	1.93
50147862--50147973	54	2.1	54	86	3	154	16	24	22	37	1.93
50161218--50161341	43	2.9	43	82	1	151	23	32	19	25	1.98
50163691--50163759	28	2.4	29	85	2	86	23	11	36	28	1.90
50166115--50166170	29	2.0	28	89	3	85	25	17	23	33	1.96
50171131--50171261	40	3.3	40	78	2	147	25	24	27	22	2.00
50181851--50182010	29	5.5	30	88	8	213	26	25	14	33	1.94
50181851--50182010	59	2.8	57	88	4	214	26	25	14	33	1.94
50189821--50189980	29	5.5	30	88	8	213	26	25	14	33	1.94
50189821--50189980	59	2.8	57	88	4	214	26	25	14	33	1.94
50194734--50194897	71	2.3	71	97	0	319	19	28	17	35	1.94
50194734--50194931	71	2.8	70	90	3	240	21	28	16	33	1.95
50196731--50196838	38	2.8	39	75	9	96	23	21	25	29	1.99
50198976--50199412	29	15.1	29	75	12	321	24	25	11	38	1.89
50198986--50199412	119	3.7	114	75	10	316	23	26	11	38	1.89
50199013--50199378	148	2.5	144	85	5	470	23	25	10	39	1.88
50203174--50203242	26	2.7	26	100	0	138	21	23	30	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50208894--50208989	40	2.4	42	93	6	164	21	19	26	32	1.97
50216795--50216900	54	2.0	53	81	9	126	37	18	23	19	1.94
50216794--50216901	27	4.0	26	77	10	110	37	20	23	19	1.95
50217482--50217856	27	14.0	27	83	6	424	25	19	19	36	1.95
50217465--50217856	54	7.3	53	87	3	475	25	19	18	35	1.95
50217493--50217845	81	4.4	81	89	0	521	25	18	18	36	1.94
50225055--50225138	44	1.9	44	82	4	107	34	27	17	20	1.95
50229502--50229570	30	2.3	30	87	0	93	31	31	23	13	1.92
50229527--50229570	13	3.1	13	77	22	52	34	29	22	13	1.93
50231691--50231725	18	1.9	18	88	0	52	20	31	0	48	1.50
50231781--50231810	2	15.0	2	100	0	60	50	0	0	50	1.00
50240458--50240485	14	2.0	14	100	0	56	35	7	7	50	1.57
50240527--50240562	18	1.9	19	88	5	56	41	16	8	33	1.78
50242084--50242116	11	2.9	11	95	4	57	60	0	0	39	0.97
50249305--50249347	20	2.2	20	84	8	54	53	4	0	41	1.21
50250815--50250868	27	2.0	29	85	10	78	27	1	7	62	1.32
50250815--50250871	26	2.1	27	84	9	73	26	1	7	64	1.28
50254821--50254933	44	2.7	41	74	14	111	24	15	24	34	1.95
50260467--50260653	40	4.8	40	78	10	183	23	28	24	24	2.00
50260504--50260654	76	2.0	77	85	6	209	23	28	23	24	2.00
50265790--50265953	43	3.9	43	77	6	138	24	18	25	32	1.97
50265828--50265935	42	2.5	43	80	4	119	25	16	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50268147--50268179	6	5.5	6	100	0	66	36	45	0	18	1.49
50272909--50273038	40	3.2	41	76	6	142	24	26	23	24	2.00
50272927--50273074	80	1.9	80	82	5	192	22	26	24	27	2.00
50282331--50282403	30	2.4	30	97	0	137	26	36	28	8	1.85
50282331--50282382	17	3.3	17	65	29	51	26	36	28	7	1.84
50286383--50286492	40	2.8	40	81	0	130	24	25	22	27	2.00
50292253--50292290	6	6.3	6	85	11	51	13	2	2	81	0.90
50297285--50297369	24	3.5	24	95	0	152	21	17	23	37	1.94
50297285--50297393	48	2.3	48	88	3	157	24	18	22	34	1.96
50306554--50306753	53	3.7	54	79	4	197	23	24	18	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318