genome.fa.s2.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  205  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64469309--64469364	22	2.6	22	83	5	62	51	0	0	48	1.00
64469842--64469931	27	3.3	27	72	6	83	31	22	15	31	1.95
64473312--64473346	2	17.5	2	100	0	70	48	0	0	51	1.00
64473339--64473396	29	1.9	29	83	13	73	46	0	18	34	1.50
64476345--64476422	29	2.6	29	85	6	93	30	6	16	46	1.72
64477188--64477212	3	8.3	3	100	0	50	64	0	0	36	0.94
64477211--64477251	3	13.7	3	100	0	82	34	0	0	65	0.93
64482017--64482069	26	2.0	27	85	7	74	24	15	22	37	1.92
64486072--64486281	40	5.2	40	88	2	305	21	28	24	25	1.99
64488995--64489191	40	4.9	40	90	1	290	21	28	23	25	1.99
64497084--64497293	40	5.2	40	88	2	305	21	28	24	25	1.99
64500381--64500530	40	3.8	40	84	5	160	23	25	22	29	1.99
64506298--64506389	32	2.8	32	77	12	89	28	26	20	25	1.99
64514297--64514388	28	3.3	28	90	0	139	17	17	39	26	1.91
64514705--64514988	27	10.6	27	84	5	346	39	20	10	29	1.86
64514941--64515005	27	2.4	27	86	0	85	38	20	16	24	1.93
64521792--64521898	29	3.7	29	85	7	137	40	12	21	26	1.88
64525810--64525934	45	2.8	45	82	4	155	23	15	28	32	1.95
64528206--64528278	37	2.0	37	94	0	128	24	32	20	21	1.97
64528363--64528711	49	7.1	49	97	0	653	30	26	8	34	1.87
64536492--64536740	43	5.8	43	76	0	221	30	26	15	27	1.96
64537826--64537850	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64539852--64539912	30	2.0	30	83	0	77	31	22	8	37	1.84
64546747--64546778	2	16.0	2	100	0	64	50	0	0	50	1.00
64547594--64547722	56	2.3	56	97	1	242	31	25	15	27	1.96
64547804--64548012	43	4.9	43	77	6	201	30	26	16	27	1.97
64547804--64548012	86	2.4	86	82	5	271	30	26	16	27	1.97
64547764--64548005	128	1.9	129	81	4	301	30	26	16	27	1.96
64555511--64555682	67	2.6	66	81	7	170	31	16	29	22	1.96
64555535--64555718	67	2.8	64	78	8	203	28	16	30	23	1.96
64559923--64560094	67	2.6	66	81	7	170	31	16	29	22	1.96
64559947--64560130	67	2.8	64	78	8	203	28	16	30	23	1.96
64563241--64563408	46	3.7	45	76	15	173	22	18	28	30	1.97
64565848--64566055	40	5.2	39	84	1	218	25	25	22	25	2.00
64565848--64566053	80	2.6	81	84	3	247	25	26	22	25	2.00
64576128--64576159	16	2.0	17	88	11	50	40	34	0	25	1.56
64578556--64578763	40	5.2	39	84	1	218	25	25	22	25	2.00
64578556--64578761	80	2.6	81	84	3	247	25	26	22	25	2.00
64586557--64586763	40	5.2	39	83	1	225	25	26	22	25	2.00
64586557--64586762	79	2.6	79	83	5	245	25	26	22	25	2.00
64592291--64592462	27	6.4	27	83	0	227	41	19	13	25	1.88
64592249--64592425	54	3.3	53	83	4	169	40	18	17	24	1.91
64593749--64593778	16	1.9	15	93	6	51	43	13	16	26	1.85
64597942--64598307	197	1.9	197	90	0	588	35	6	18	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64609784--64609962	47	3.8	49	79	16	191	29	29	20	21	1.98
64609792--64609962	94	1.8	92	93	2	297	28	29	20	21	1.98
64613317--64613545	46	5.0	43	75	12	183	22	31	20	25	1.98
64613334--64613494	46	3.6	44	84	8	184	24	31	20	24	1.98
64615989--64616122	47	2.8	49	77	17	156	29	28	19	22	1.98
64624957--64625063	27	4.0	27	92	0	160	31	20	22	25	1.98
64625049--64625147	27	3.6	27	79	6	101	39	23	6	31	1.79
64625049--64625205	27	5.8	27	70	10	81	37	24	8	29	1.84
64625049--64625161	54	2.1	54	81	3	129	38	21	7	31	1.82
64625238--64625372	27	5.0	27	92	0	198	36	16	20	27	1.93
64626797--64626964	39	4.3	39	92	0	246	25	31	19	23	1.98
64629100--64629164	22	3.0	22	77	8	78	21	24	21	32	1.98
64629494--64629599	6	17.3	6	67	18	58	18	14	14	52	1.74
64629497--64629560	25	2.6	25	82	0	74	18	15	14	51	1.76
64629542--64629590	18	2.7	18	84	6	64	18	10	12	59	1.60
64632601--64632681	40	2.0	40	97	0	153	43	17	16	23	1.88
64633928--64634021	42	2.2	43	82	1	109	30	23	19	26	1.98
64639574--64639625	28	1.9	27	84	7	70	30	1	28	38	1.68
64648405--64648577	87	2.0	88	85	7	237	33	24	15	27	1.95
64660843--64660930	25	3.5	25	84	0	104	47	12	17	22	1.81
64661052--64661167	27	4.4	26	86	7	144	38	21	22	17	1.93
64661756--64661868	27	4.2	26	84	4	127	27	20	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64661852--64661950	27	3.7	27	68	10	76	32	8	22	37	1.83
64663282--64663442	43	3.7	43	74	13	143	34	26	18	21	1.96
64674353--64674415	24	2.5	25	84	5	83	33	19	20	26	1.96
64674355--64674434	24	3.4	24	79	8	76	35	17	20	27	1.95
64674352--64674481	45	2.8	47	77	11	133	34	18	20	26	1.95
64678198--64678240	19	2.3	19	95	0	77	0	13	48	37	1.43
64678554--64678975	27	15.7	27	81	5	253	38	21	8	31	1.83
64678701--64678975	54	5.1	54	80	5	279	41	22	7	28	1.81
64678710--64678975	81	3.3	81	84	5	324	42	21	7	28	1.80
64678930--64679002	27	2.6	27	84	4	83	49	19	4	27	1.66
64679092--64679156	27	2.4	27	89	5	96	35	20	23	21	1.96
64680399--64680469	20	3.5	20	88	7	108	33	12	21	32	1.91
64680516--64680704	25	7.9	24	95	1	303	26	21	23	28	1.99
64683152--64683206	27	2.0	27	86	10	76	32	21	25	20	1.97
64683621--64683676	27	2.1	27	83	6	69	25	16	21	37	1.93
64684217--64684269	28	1.9	27	85	11	72	30	24	24	20	1.99
64685297--64685362	28	2.4	28	82	12	75	34	21	22	21	1.96
64685779--64685834	27	2.1	27	83	6	69	25	16	21	37	1.93
64700039--64700068	11	2.7	11	94	0	51	13	0	3	83	0.77
64700045--64700074	15	1.9	16	93	6	53	13	0	3	83	0.77
64704114--64704228	53	2.2	53	88	3	169	23	22	20	33	1.97
64704114--64704228	26	4.3	26	90	3	167	23	22	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64705913--64706054	40	3.5	40	83	1	124	27	23	26	22	1.99
64705952--64706080	40	3.2	39	84	6	152	24	22	27	25	2.00
64713801--64713943	40	3.6	40	82	4	130	27	23	27	22	1.99
64713839--64713950	40	2.8	39	86	6	145	23	23	28	25	1.99
64717839--64718022	40	4.6	39	75	6	138	26	23	27	22	2.00
64717879--64718067	80	2.4	81	77	4	186	23	24	29	22	1.99
64725951--64726134	40	4.6	39	75	6	138	26	23	27	22	2.00
64725991--64726179	80	2.4	81	77	4	186	23	24	29	22	1.99
64734812--64734914	29	3.6	28	80	5	116	29	33	16	21	1.95
64741333--64741717	40	9.6	40	86	4	497	23	22	26	26	2.00
64741333--64741717	162	2.4	163	95	1	686	23	22	26	26	2.00
64749610--64750020	40	10.1	40	88	3	570	24	22	26	27	2.00
64749610--64750020	123	3.4	121	85	6	571	24	22	26	27	2.00
64749617--64750020	163	2.5	163	95	0	709	24	22	26	26	2.00
64752833--64753008	80	2.2	79	92	2	291	41	2	18	37	1.63
64753285--64753562	48	5.8	48	78	9	255	27	19	25	27	1.99
64762135--64762260	27	4.7	27	88	0	171	27	23	9	39	1.85
64762123--64762227	54	1.9	54	80	0	120	27	23	9	39	1.86
64762087--64762272	27	6.9	27	77	3	88	31	23	8	36	1.85
64762159--64762272	54	2.1	54	83	0	138	28	24	9	37	1.87
64762263--64762491	27	8.5	27	84	1	253	36	18	20	24	1.95
64762262--64762486	81	2.8	81	86	0	306	36	19	20	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64762842--64762902	27	2.3	27	82	2	70	21	22	22	32	1.98
64763020--64763231	6	34.3	6	69	17	114	19	18	13	48	1.81
64763023--64763112	25	3.6	25	92	0	135	17	17	16	47	1.83
64763020--64763149	31	4.4	31	72	21	134	18	17	16	47	1.83
64763067--64763149	37	2.2	37	86	0	121	18	18	16	46	1.84
64763042--64763210	62	2.7	62	88	0	248	19	18	13	47	1.81
64763108--64763172	25	2.6	25	87	0	94	20	20	10	49	1.78
64763142--64763222	37	2.2	37	86	4	110	19	19	9	50	1.75
64766317--64766383	20	3.3	20	91	4	109	34	10	19	35	1.86
64766328--64766383	11	5.5	11	77	16	66	33	10	19	35	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318