genome.fa.s2.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  145  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44301592--44301617	2	13.0	2	100	0	52	50	0	0	50	1.00
44303821--44303951	40	3.3	40	80	2	147	24	28	22	24	2.00
44311824--44311989	40	4.2	39	81	3	172	24	27	22	25	2.00
44311840--44311989	79	1.9	79	84	5	205	24	27	22	26	2.00
44314027--44314166	39	3.6	39	89	7	205	23	20	29	26	1.99
44314184--44314288	40	2.7	40	83	1	140	21	20	29	28	1.98
44322268--44322514	40	6.2	40	89	2	356	23	21	28	26	1.99
44322268--44322514	79	3.1	80	88	2	356	23	21	28	26	1.99
44322271--44322514	119	2.1	119	88	4	359	23	20	28	27	1.99
44326419--44326682	47	5.7	46	74	16	174	26	17	32	24	1.96
44327817--44327856	21	2.0	21	90	5	64	12	40	27	20	1.88
44329407--44329479	29	2.5	29	100	0	146	31	15	28	24	1.95
44329466--44329538	29	2.5	29	84	0	92	28	17	26	27	1.98
44337349--44337421	29	2.5	29	100	0	146	31	15	28	24	1.95
44337408--44337480	29	2.5	29	84	0	92	28	17	26	27	1.98
44344926--44345091	38	4.3	38	83	1	197	22	20	24	33	1.97
44344897--44345085	76	2.4	78	80	6	206	24	22	23	30	1.99
44345350--44345393	19	2.4	19	85	7	56	50	0	9	40	1.34
44347191--44347259	28	2.5	28	92	2	113	43	26	10	20	1.83
44349649--44349692	19	2.4	19	85	7	56	50	0	9	40	1.34
44351367--44351435	28	2.5	28	92	2	113	44	26	10	18	1.81
44358553--44358701	80	1.9	80	81	2	183	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44358594--44358701	40	2.7	38	85	8	128	21	29	25	23	1.99
44363671--44363854	79	2.3	79	83	8	223	23	22	27	26	2.00
44363671--44363854	40	4.7	40	83	8	225	23	22	27	26	2.00
44363726--44363877	79	1.9	79	82	7	193	25	21	27	26	1.99
44371051--44371230	40	4.5	40	82	8	190	24	22	26	26	2.00
44371051--44371230	79	2.2	80	81	7	206	24	22	26	26	2.00
44371080--44371253	79	2.2	78	79	10	183	26	21	25	26	2.00
44374756--44375102	47	7.4	47	94	1	597	31	7	30	29	1.86
44379423--44379552	40	3.3	39	83	4	163	23	25	28	23	1.99
44387485--44387614	40	3.3	39	83	4	163	23	25	28	23	1.99
44391106--44391230	42	3.0	42	70	5	108	25	16	26	31	1.97
44394498--44394661	47	3.5	47	76	13	151	25	31	16	27	1.96
44395789--44395819	2	15.5	2	100	0	62	48	0	0	51	1.00
44410995--44411067	28	2.6	28	84	4	94	30	13	23	32	1.93
44422934--44423093	29	5.5	29	82	4	180	26	16	31	25	1.97
44428591--44428642	15	3.2	15	75	19	59	42	0	1	55	1.10
44428642--44428687	16	2.5	19	73	23	53	43	2	6	47	1.41
44437361--44437419	23	2.6	23	100	0	118	13	32	33	20	1.91
44445837--44445868	15	2.1	15	100	0	64	18	25	18	37	1.94
44446275--44446318	23	1.9	23	85	0	61	38	29	13	18	1.89
44448935--44449092	51	3.1	51	92	1	255	29	23	14	32	1.94
44453715--44453799	32	2.7	32	90	0	134	28	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44456856--44457063	40	5.2	39	82	3	202	25	25	23	25	2.00
44456856--44457062	80	2.6	80	82	3	238	25	26	23	25	2.00
44462325--44462475	40	3.8	40	79	6	155	26	23	27	22	2.00
44462362--44462491	40	3.2	40	80	2	154	23	23	27	24	2.00
44470311--44470461	40	3.8	40	77	13	141	25	24	27	22	2.00
44470348--44470477	40	3.2	40	80	2	154	23	23	27	24	2.00
44473832--44473991	29	5.5	29	82	4	180	25	31	16	26	1.97
44481996--44482155	29	5.5	29	82	4	180	25	31	16	26	1.97
44488685--44488757	29	2.5	29	93	0	101	26	31	16	26	1.96
44490044--44490091	25	2.0	23	84	8	60	8	16	0	75	1.04
44491486--44491546	30	2.0	30	87	0	86	40	4	24	29	1.76
44492038--44492323	64	4.4	64	81	6	290	31	15	29	24	1.95
44495058--44495139	41	2.0	41	95	0	146	42	12	23	21	1.86
44496074--44496134	30	2.0	30	87	0	86	39	4	24	31	1.77
44496627--44496900	64	4.2	64	81	6	291	31	15	28	24	1.95
44504921--44504950	15	1.9	16	93	6	53	20	26	6	46	1.75
44505116--44505183	32	2.1	32	89	5	102	16	29	2	51	1.59
44511757--44511826	21	3.3	21	92	4	115	35	18	25	20	1.95
44514135--44514188	21	2.5	22	84	3	65	24	37	25	12	1.91
44518294--44518390	48	2.0	48	93	0	167	39	8	26	25	1.84
44519225--44519249	2	12.5	2	100	0	50	52	0	0	48	1.00
44520105--44520145	19	2.1	20	90	4	66	43	4	9	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44526022--44526078	26	2.2	26	90	0	87	24	8	22	43	1.81
44527291--44527368	18	4.3	18	81	0	93	37	16	21	24	1.94
44527692--44528002	27	11.5	27	79	6	301	39	18	15	25	1.90
44527687--44527983	81	3.7	81	82	3	348	39	19	14	25	1.90
44537741--44537910	40	4.2	40	87	3	234	21	28	24	25	1.99
44547994--44548067	29	2.6	29	95	0	139	27	14	31	27	1.95
44548051--44548126	29	2.6	29	78	0	89	22	19	35	22	1.96
44547994--44548126	58	2.3	58	80	2	133	24	17	33	24	1.96
44550828--44550890	30	2.1	30	84	0	81	17	17	14	50	1.78
44553773--44553833	31	2.0	31	100	0	122	31	9	26	32	1.89
44556498--44556555	29	2.0	29	93	0	98	48	15	1	34	1.55
44562060--44562174	29	4.0	29	83	6	128	29	15	26	27	1.96
44562785--44562896	55	2.0	55	94	0	197	16	13	25	44	1.84
44569968--44570068	28	3.5	30	82	6	118	29	14	26	28	1.95
44569997--44570072	29	2.7	28	76	13	75	30	14	26	28	1.95
44577785--44577885	28	3.5	30	82	6	118	29	14	26	28	1.95
44577814--44577889	29	2.7	28	76	13	75	30	14	26	28	1.95
44581682--44581889	40	5.2	39	84	1	218	25	26	22	25	2.00
44581682--44581888	80	2.6	80	83	1	245	25	26	22	25	2.00
44589636--44589843	40	5.2	39	84	1	218	25	26	22	25	2.00
44589636--44589842	80	2.6	80	83	1	245	25	26	22	25	2.00
44594632--44594661	14	2.1	15	93	6	53	6	33	0	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44597714--44597825	27	4.2	26	84	10	127	18	24	21	35	1.95
44597714--44597825	54	2.1	54	86	6	156	18	24	21	35	1.95
44605586--44605670	27	3.2	26	88	8	125	14	24	23	37	1.92
44607121--44607164	22	1.9	22	86	9	61	29	11	2	56	1.46
44609966--44610010	23	2.0	23	82	8	56	37	11	13	37	1.80
44610010--44610039	14	2.1	14	93	0	51	16	0	36	46	1.47
44611875--44611970	48	2.0	48	95	0	174	40	19	4	35	1.71
44613241--44613418	45	4.1	44	80	9	143	34	28	14	22	1.93
44614504--44614536	15	2.2	16	89	10	52	57	18	0	24	1.40
44617161--44617367	103	2.0	103	98	0	396	34	20	11	33	1.89
44621610--44621669	30	2.0	29	83	3	75	40	5	25	30	1.77
44622383--44622554	67	2.6	66	81	7	170	31	16	29	22	1.96
44622407--44622590	67	2.8	64	78	8	203	28	16	30	23	1.96
44626748--44627006	68	3.9	64	76	14	233	30	16	29	24	1.96
44630443--44630503	30	2.0	30	87	0	86	40	4	24	29	1.76
44632793--44632924	29	4.6	29	84	1	149	25	16	32	25	1.96
44643799--44643965	40	4.2	40	82	2	185	24	26	22	26	2.00
44647443--44647543	28	3.5	30	82	6	118	29	14	26	28	1.95
44647472--44647547	29	2.7	28	76	13	75	30	14	26	28	1.95
44656439--44656574	40	3.4	40	88	4	186	24	25	24	25	2.00
44659293--44659483	39	4.9	39	90	0	283	26	21	29	22	1.99
44659295--44659513	39	5.6	40	86	2	239	26	22	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44662186--44662256	25	2.8	25	93	2	115	26	26	22	23	2.00
44662196--44662269	25	2.9	26	81	15	84	27	25	21	25	2.00
44662476--44662552	31	2.5	31	89	0	118	32	18	24	24	1.97
44664488--44664688	81	2.5	82	86	4	282	34	22	22	19	1.96
44664457--44664678	122	1.8	121	85	4	313	36	22	21	20	1.96
44664424--44664696	41	6.7	41	83	4	270	34	21	21	21	1.97
44664872--44664916	14	3.2	14	80	0	54	26	0	24	48	1.51
44664961--44665095	7	19.1	7	74	10	96	20	0	40	38	1.53
44670071--44670122	28	1.9	28	84	7	72	28	3	5	61	1.37
44673083--44673292	40	5.2	40	88	2	305	21	28	24	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318