genome.fa.s2.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  110  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33679405--33679523	41	2.9	41	83	6	150	25	15	27	31	1.96
33685792--33685989	71	2.8	70	92	3	294	33	17	28	20	1.95
33685858--33685975	41	3.1	41	60	28	98	32	17	28	21	1.96
33685826--33685989	71	2.3	71	100	0	328	35	17	28	18	1.94
33693359--33693556	71	2.8	70	92	3	294	33	17	28	20	1.95
33693425--33693542	41	3.1	41	60	28	98	32	17	28	21	1.96
33693393--33693556	71	2.3	71	100	0	328	35	17	28	18	1.94
33696228--33696301	38	1.9	39	86	2	105	39	21	8	31	1.83
33696232--33696311	19	4.2	19	78	10	74	38	21	8	31	1.84
33707534--33707651	44	2.7	43	83	6	132	26	18	23	31	1.98
33720582--33720766	79	2.3	80	82	7	207	24	26	23	25	2.00
33720563--33720766	40	5.1	40	74	9	141	24	26	24	25	2.00
33723590--33723811	40	5.7	39	86	9	276	24	21	27	26	1.99
33723597--33723844	79	3.2	76	79	15	256	26	20	26	26	1.99
33731841--33732065	40	5.6	39	85	4	238	25	22	25	26	2.00
33731847--33732065	79	2.8	80	81	9	268	26	21	25	26	2.00
33736450--33736552	37	2.8	37	95	0	179	24	33	20	22	1.97
33736693--33737225	48	11.0	47	93	1	771	31	25	6	36	1.81
33736693--33737225	144	3.7	144	93	1	870	31	25	6	36	1.81
33740416--33740482	27	2.5	26	83	13	91	25	19	19	35	1.95
33741859--33741891	16	2.0	17	88	5	50	63	18	18	0	1.31
33745037--33745186	40	3.8	40	73	14	123	27	24	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33747342--33747414	36	2.0	36	83	0	92	45	17	12	24	1.83
33750319--33750445	68	1.9	68	81	6	159	24	29	14	31	1.95
33750910--33750969	30	2.0	30	87	3	86	28	25	5	41	1.76
33754491--33754718	22	10.0	22	73	10	152	20	3	32	42	1.71
33754490--33754716	93	2.5	91	85	5	289	21	3	32	42	1.71
33756828--33756864	17	2.2	17	95	0	65	29	5	27	37	1.79
33767017--33767140	29	4.3	29	83	6	146	28	16	26	29	1.97
33773214--33773244	16	1.9	16	93	0	53	51	25	6	16	1.68
33774423--33774461	8	4.9	8	90	0	60	41	23	25	10	1.86
33774423--33774469	16	2.9	16	90	0	67	42	21	25	10	1.85
33774419--33774469	24	2.1	24	88	0	75	47	19	23	9	1.79
33774679--33774753	29	2.6	28	85	4	105	29	16	28	26	1.96
33775854--33775905	25	2.1	25	92	3	88	23	19	25	32	1.97
33775961--33776012	11	5.0	11	79	11	65	28	21	13	36	1.91
33775953--33776012	20	2.9	20	87	5	84	31	20	11	36	1.88
33781220--33781268	17	2.8	18	74	22	50	24	18	22	34	1.96
33782091--33782257	40	4.2	40	79	6	169	25	21	27	25	1.99
33790187--33790390	40	5.1	40	86	4	263	22	22	28	26	1.99
33792944--33793165	48	4.7	48	74	9	215	27	24	20	27	1.99
33796264--33796436	46	3.7	46	74	10	163	23	20	25	30	1.99
33796261--33796431	93	1.8	93	87	0	252	23	21	26	29	1.99
33796661--33796698	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33800604--33800753	67	2.2	67	81	8	171	32	17	28	21	1.96
33800628--33800811	67	2.8	64	77	8	194	29	17	29	22	1.97
33805096--33805223	66	1.9	65	82	6	159	32	17	29	21	1.96
33806324--33806348	2	12.5	2	100	0	50	48	0	0	52	1.00
33809627--33809689	26	2.4	26	94	0	117	20	26	20	31	1.98
33816231--33816333	29	3.6	28	80	5	116	29	33	16	21	1.95
33820171--33820236	18	3.7	18	79	0	69	42	15	22	19	1.88
33820584--33820681	26	3.7	26	80	9	110	35	19	17	27	1.94
33824615--33824645	16	1.9	16	93	0	53	35	22	0	41	1.54
33824612--33824651	20	2.0	20	85	0	53	37	22	0	40	1.54
33824724--33824768	23	1.9	24	90	4	74	22	24	11	42	1.86
33824840--33825091	55	4.8	53	78	6	183	21	25	17	36	1.95
33827409--33827513	27	3.9	27	70	5	86	35	24	7	32	1.84
33827504--33827638	27	5.0	27	88	1	191	33	19	22	25	1.97
33828203--33828330	6	20.8	6	68	19	68	21	17	11	48	1.79
33828203--33828266	25	2.5	26	82	7	78	25	18	7	48	1.75
33828229--33828309	37	2.2	37	90	0	126	20	18	11	49	1.78
33828250--33828330	18	4.4	18	77	11	85	19	16	13	50	1.77
33830805--33830874	27	2.5	28	93	2	115	27	14	30	28	1.95
33830805--33830886	27	3.0	27	84	8	69	28	15	26	29	1.96
33838911--33839114	40	5.1	40	86	4	263	22	22	28	26	1.99
33841664--33841885	48	4.7	48	74	9	215	27	24	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33844977--33845147	46	3.7	46	77	12	190	22	20	27	29	1.98
33844974--33845142	92	1.8	92	91	2	277	21	20	28	28	1.98
33845370--33845407	19	2.0	20	85	15	53	36	0	23	39	1.55
33845950--33846115	40	4.2	40	81	8	171	25	21	27	25	2.00
33853071--33853119	17	2.8	18	74	22	50	24	18	22	34	1.96
33853941--33854107	40	4.2	40	79	6	169	25	21	27	25	1.99
33857387--33857550	71	2.3	71	96	0	301	18	28	18	34	1.95
33857387--33857584	71	2.8	70	88	5	242	20	28	18	32	1.96
33859698--33860035	27	12.7	27	79	7	208	36	23	7	32	1.84
33859711--33859883	54	3.2	54	89	1	267	29	26	6	37	1.82
33859711--33859883	81	2.1	81	93	2	294	29	26	6	37	1.82
33859882--33860036	53	2.9	51	80	2	148	40	22	8	28	1.83
33860020--33860330	27	11.3	27	83	6	347	36	20	19	23	1.95
33860028--33860295	143	1.9	143	88	1	412	35	20	20	23	1.96
33860072--33860245	89	2.0	89	95	0	312	36	20	21	22	1.95
33860045--33860272	116	2.0	116	90	0	357	36	19	20	23	1.95
33860756--33860820	22	3.0	22	80	8	78	20	23	23	33	1.97
33860978--33861079	27	3.8	26	87	5	123	19	22	21	36	1.95
33861236--33861343	6	17.8	6	76	16	107	19	16	13	50	1.79
33861211--33861343	31	4.4	30	89	6	187	18	17	15	48	1.81
33861211--33861364	30	5.1	30	85	7	168	18	17	14	48	1.81
33863341--33863678	27	12.7	27	79	8	210	36	23	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33863354--33863526	54	3.2	54	89	1	267	29	26	6	37	1.82
33863354--33863526	81	2.1	81	93	2	294	29	26	6	37	1.82
33863663--33863972	27	11.3	27	83	7	347	36	20	20	23	1.95
33863636--33863810	54	3.3	53	85	4	165	38	21	17	22	1.93
33863671--33863937	142	1.9	143	88	2	412	35	20	20	23	1.96
33863753--33863914	62	2.8	61	81	8	194	38	19	19	22	1.94
33863688--33863914	115	2.0	116	90	0	357	37	19	20	22	1.95
33863715--33863887	89	2.0	88	95	1	310	36	20	21	21	1.95
33864398--33864462	22	3.0	22	80	8	78	20	23	23	33	1.97
33864620--33864721	27	3.8	26	87	5	123	19	22	21	36	1.95
33864878--33864984	6	17.8	6	83	11	139	18	15	14	50	1.78
33864853--33864984	30	4.4	30	93	0	201	18	16	15	49	1.80
33866979--33867315	27	12.7	27	79	9	210	36	24	7	32	1.83
33866992--33867163	54	3.2	54	89	3	267	29	26	6	37	1.81
33866992--33867163	80	2.1	81	92	3	285	29	26	6	37	1.81
33867300--33867609	27	11.3	27	84	7	356	35	20	20	23	1.96
33867308--33867574	142	1.9	143	89	2	421	35	20	20	23	1.96
33867390--33867509	62	2.0	61	91	1	195	37	20	20	21	1.94
33867325--33867551	115	2.0	116	89	0	348	36	19	20	22	1.95
33867352--33867524	89	2.0	88	96	1	319	35	20	21	21	1.96
33868035--33868099	22	3.0	22	80	8	78	20	23	23	33	1.97
33868257--33868358	27	3.8	26	87	5	123	19	22	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33868514--33868618	6	17.8	6	79	14	121	20	15	14	50	1.78
33868489--33868618	29	4.4	30	89	7	194	19	16	15	49	1.80
33870609--33870943	27	12.7	27	78	9	199	36	24	7	32	1.83
33870622--33870791	54	3.2	54	87	6	258	30	25	6	37	1.81
33870622--33870791	78	2.1	79	91	5	272	30	25	6	37	1.81
33870781--33870891	52	2.1	53	79	11	122	36	24	9	29	1.86
33870928--33871237	27	11.3	27	84	7	356	35	20	20	23	1.96
33870901--33871076	54	3.3	53	84	4	167	37	21	18	22	1.94
33870936--33871202	142	1.9	143	90	2	430	35	20	20	23	1.96
33870953--33871179	115	2.0	116	89	0	348	36	19	20	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318