genome.fa.s2.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  132  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40385723--40385760	20	1.9	20	88	0	58	34	5	10	50	1.59
40390041--40390167	40	3.2	38	78	5	119	25	22	26	25	2.00
40395333--40395370	20	1.9	20	88	0	58	34	2	10	52	1.50
40401379--40401427	17	2.8	18	74	22	50	24	18	22	34	1.96
40402248--40402348	40	2.6	37	83	6	121	29	21	26	21	1.99
40402248--40402394	77	1.9	76	83	6	190	26	21	27	24	1.99
40402248--40402410	39	4.2	39	75	10	147	26	21	26	25	1.99
40406933--40406970	19	2.0	20	85	15	53	39	23	0	36	1.55
40407198--40407364	47	3.6	45	79	13	196	28	28	20	21	1.98
40407194--40407368	46	3.8	48	78	14	179	29	28	21	21	1.99
40407199--40407368	92	1.8	93	93	1	297	28	28	21	21	1.98
40414513--40414550	19	2.0	20	85	15	53	39	23	0	36	1.55
40414774--40414944	46	3.7	46	78	11	190	29	28	20	21	1.98
40414779--40414947	93	1.8	91	91	2	275	28	28	20	21	1.98
40414822--40414963	46	3.1	45	74	18	132	28	28	19	23	1.98
40415367--40415426	30	2.0	30	86	0	84	33	25	5	36	1.78
40426425--40426729	70	4.4	69	80	3	283	26	17	19	35	1.94
40426562--40426725	36	4.7	34	70	12	118	26	18	20	34	1.96
40426425--40426690	140	1.9	140	82	3	338	27	16	19	37	1.93
40426425--40426725	140	2.2	140	81	4	331	27	17	19	35	1.94
40428537--40428611	33	2.3	33	82	11	84	41	17	21	20	1.90
40436600--40436728	46	2.8	46	94	2	215	20	20	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40441312--40441386	33	2.3	33	79	6	82	41	14	22	21	1.89
40447235--40447326	40	2.3	40	85	7	116	28	17	27	27	1.98
40456576--40456632	30	1.9	30	85	7	80	43	8	19	28	1.80
40456930--40456983	27	2.0	27	85	0	72	40	5	14	38	1.70
40457228--40457460	49	4.7	50	82	2	272	27	18	25	28	1.98
40461473--40461704	49	4.7	49	80	4	259	30	26	17	25	1.97
40461473--40461704	100	2.3	99	83	2	286	30	26	17	25	1.97
40461950--40462003	27	2.0	27	85	0	72	38	14	7	38	1.75
40464395--40464523	46	2.8	46	87	5	183	27	18	30	23	1.98
40467375--40467419	14	2.9	17	84	15	62	42	4	0	53	1.21
40467379--40467430	17	3.2	16	82	12	54	40	7	0	51	1.30
40474973--40475017	22	2.0	22	82	0	54	13	42	22	22	1.88
40480959--40481028	34	2.0	35	84	13	92	41	1	1	55	1.17
40481543--40481583	9	4.6	9	84	0	55	48	14	9	26	1.75
40482910--40482948	2	19.5	2	100	0	78	51	0	0	48	1.00
40484077--40484125	24	2.0	24	96	0	89	40	16	16	26	1.89
40489800--40489900	28	3.6	27	84	6	114	32	21	23	21	1.98
40489811--40489900	27	3.2	27	82	7	101	34	23	22	20	1.97
40490006--40490098	28	3.3	28	93	0	159	32	7	25	34	1.84
40497510--40497617	26	4.2	26	93	0	189	36	24	7	32	1.83
40499893--40499951	29	2.0	30	80	9	68	45	11	10	32	1.74
40509138--40509173	17	2.1	17	94	0	63	50	19	2	27	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40512162--40512192	16	1.9	16	100	0	62	45	12	6	35	1.68
40523095--40523142	11	4.2	11	79	10	51	62	2	0	35	1.07
40523099--40523171	27	2.7	26	74	19	78	58	4	0	36	1.17
40524635--40524711	31	2.5	31	89	6	129	25	23	18	32	1.97
40524739--40524826	42	2.1	42	91	0	140	36	19	13	30	1.90
40524970--40525092	26	4.8	26	92	1	196	30	23	20	26	1.99
40526000--40526149	54	2.8	53	81	3	156	28	8	22	40	1.82
40525998--40526149	27	5.7	26	77	11	121	29	7	22	40	1.82
40526186--40526271	27	3.2	27	88	0	118	43	8	20	27	1.80
40527931--40528098	40	4.2	40	80	12	175	23	22	27	26	1.99
40527931--40528098	80	2.1	79	86	4	230	23	22	27	26	1.99
40535937--40536104	40	4.2	40	80	12	175	23	22	27	26	1.99
40535937--40536104	80	2.1	79	86	4	230	23	22	27	26	1.99
40537481--40537662	27	6.7	27	82	3	159	29	8	20	40	1.83
40537480--40537857	27	13.9	27	73	10	146	31	8	21	38	1.83
40537492--40537851	109	3.3	106	72	8	260	31	8	20	39	1.82
40537481--40537851	54	6.8	54	73	9	220	31	8	21	39	1.83
40547903--40547929	13	2.1	13	100	0	54	14	33	37	14	1.88
40550269--40550307	21	2.0	20	85	14	55	43	43	5	7	1.55
40558417--40558618	40	5.1	39	83	6	176	26	21	27	24	1.99
40558454--40558602	40	3.8	40	86	7	196	29	22	27	20	1.98
40566375--40566483	26	4.2	26	91	1	166	33	5	22	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40568264--40568685	136	3.1	136	97	0	772	24	18	24	32	1.97
40569921--40570124	40	5.1	40	85	4	214	26	22	27	23	1.99
40575611--40575711	28	3.5	28	86	6	114	29	13	26	29	1.94
40583562--40583662	28	3.5	28	86	6	114	29	13	26	29	1.94
40586183--40586219	14	2.6	14	91	0	56	67	2	0	29	1.04
40587912--40587992	36	2.2	37	95	4	146	54	8	7	29	1.58
40587926--40587985	20	3.2	20	63	18	56	55	6	5	33	1.48
40592739--40592770	11	3.0	11	95	4	57	56	0	0	43	0.99
40593959--40594151	56	3.4	56	93	0	323	26	16	23	33	1.96
40593959--40594180	56	4.0	56	84	6	263	26	16	24	32	1.96
40593959--40594176	112	1.9	112	89	1	339	26	16	24	33	1.96
40599863--40599921	21	2.8	22	85	7	70	23	0	6	69	1.12
40599892--40599951	26	2.4	24	83	8	75	28	0	3	68	1.05
40602472--40602676	46	4.4	47	74	12	120	25	27	17	29	1.97
40604467--40604525	2	29.5	2	100	0	118	50	49	0	0	1.00
40604525--40604550	2	13.0	2	100	0	52	50	0	0	50	1.00
40605637--40605672	17	2.1	18	90	10	58	61	11	0	27	1.30
40605786--40605919	49	2.8	49	86	3	182	29	30	12	27	1.93
40609382--40609406	11	2.3	11	100	0	50	52	0	12	36	1.39
40615988--40616034	22	2.2	22	88	3	69	40	14	31	12	1.84
40616179--40616277	28	3.5	28	87	2	128	53	15	7	24	1.66
40622813--40622883	28	2.5	28	93	0	124	53	15	8	22	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40623453--40623552	52	2.0	50	80	7	112	35	13	12	40	1.81
40623692--40623765	9	8.6	9	70	24	52	25	0	17	56	1.41
40624154--40624262	53	2.1	53	100	0	218	28	23	14	33	1.94
40624380--40624409	15	2.0	15	93	0	51	3	20	30	46	1.66
40631935--40631969	11	3.3	10	92	8	52	71	0	0	28	0.86
40632698--40632735	14	2.5	15	91	8	60	42	0	0	57	0.98
40634087--40634166	25	3.2	25	90	0	124	37	8	15	38	1.78
40634087--40634150	13	5.1	13	68	21	55	39	7	14	39	1.74
40638679--40638759	25	3.2	25	92	3	128	38	7	14	39	1.75
40641670--40641710	14	2.9	14	89	7	57	2	12	2	82	0.86
40644068--40644118	22	2.3	22	93	0	84	25	9	15	49	1.75
40648969--40649067	33	3.0	33	92	0	162	32	41	9	17	1.80
40653148--40653204	29	2.0	29	100	0	114	54	14	7	24	1.64
40656931--40657037	52	2.1	52	85	5	146	31	13	17	37	1.88
40658262--40658303	16	2.6	16	84	0	57	21	7	9	61	1.50
40669470--40669516	21	2.2	22	85	11	62	21	29	6	42	1.77
40671508--40671674	35	4.6	35	83	7	192	34	23	10	31	1.88
40671503--40671674	75	2.4	74	84	8	221	34	23	10	31	1.89
40677052--40677253	46	4.4	46	92	1	289	21	23	15	40	1.91
40679030--40679252	40	5.6	39	86	7	306	22	23	28	25	1.99
40679030--40679252	83	2.8	80	89	6	362	22	23	28	25	1.99
40687393--40687462	27	2.6	27	97	2	131	31	27	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40690410--40690634	40	5.6	40	81	8	260	22	21	29	26	1.99
40690410--40690634	83	2.8	79	85	6	324	22	21	29	26	1.99
40691420--40691477	28	2.1	28	96	0	107	29	18	13	37	1.90
40695126--40695150	12	2.1	12	100	0	50	8	8	0	84	0.79
40697004--40697113	46	2.4	46	86	3	141	18	21	16	43	1.88
40697808--40698268	123	3.8	123	96	0	816	30	10	25	34	1.89
40698237--40698480	40	6.1	40	88	1	301	24	21	26	27	1.99
40705073--40705265	64	3.1	64	60	15	150	28	10	26	34	1.90
40704923--40705380	123	3.7	123	97	0	830	30	10	25	34	1.89
40707561--40707709	80	1.9	80	81	2	183	22	30	24	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318