genome.fa.s2.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  178  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55267262--55267383	43	2.8	43	85	2	147	25	17	27	30	1.97
55271529--55271639	47	2.4	47	95	0	195	30	12	12	44	1.80
55277548--55277677	42	3.0	43	78	10	149	33	28	16	21	1.95
55280071--55280220	40	3.7	40	76	4	149	27	24	20	27	1.99
55284410--55284450	13	3.2	13	96	0	73	21	36	24	17	1.94
55289897--55290079	39	4.6	39	87	0	240	22	30	22	24	1.99
55296564--55296746	39	4.6	39	86	2	233	23	29	21	25	1.99
55297897--55298154	40	6.5	40	88	2	324	26	27	22	24	2.00
55302013--55302553	286	1.9	286	89	0	850	24	31	20	23	1.98
55303846--55304021	46	3.8	46	81	10	232	20	21	29	28	1.98
55303842--55304013	93	1.8	93	96	0	317	20	22	30	27	1.98
55310288--55310426	71	2.0	71	92	2	235	35	17	5	41	1.73
55317558--55317773	40	5.4	40	84	2	240	27	28	21	23	1.99
55323263--55323441	27	6.7	27	88	1	245	41	20	7	30	1.79
55323263--55323495	81	2.9	81	82	5	233	40	21	8	30	1.82
55323425--55323499	27	2.8	27	87	4	107	38	24	10	26	1.88
55323315--55323622	54	5.7	54	82	5	153	35	21	9	33	1.86
55323491--55323836	27	12.8	27	88	2	428	28	22	8	40	1.82
55323518--55323880	81	4.5	81	82	6	223	29	22	8	39	1.83
55325074--55325121	25	1.9	25	86	0	69	33	25	16	25	1.96
55325165--55325223	20	3.0	20	92	0	100	35	11	20	32	1.89
55325274--55325439	24	7.0	24	91	4	248	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55325274--55325439	47	3.5	47	90	5	246	28	22	22	26	1.99
55325631--55325725	31	3.1	31	98	0	181	38	15	22	23	1.92
55328535--55328685	27	5.7	27	87	2	191	41	19	7	31	1.79
55328535--55328757	54	4.2	54	77	6	204	39	20	8	30	1.83
55328669--55328743	27	2.8	27	87	4	107	38	24	10	26	1.88
55328735--55329080	27	12.8	27	88	2	428	28	22	8	40	1.82
55328762--55329124	81	4.5	81	82	6	223	29	22	8	39	1.83
55330320--55330367	25	1.9	25	86	0	69	33	25	16	25	1.96
55330411--55330469	20	3.0	20	92	0	100	35	11	20	32	1.89
55330520--55330686	24	7.0	24	93	3	257	28	22	22	26	1.99
55330520--55330687	71	2.3	71	90	4	257	29	22	22	26	1.99
55330878--55330972	31	3.1	31	98	0	181	38	15	22	23	1.92
55333776--55333954	27	6.7	27	88	1	245	41	20	7	30	1.79
55333776--55334008	81	2.9	81	82	5	233	40	21	8	30	1.82
55333938--55334012	27	2.8	27	87	4	107	38	24	10	26	1.88
55333828--55334135	54	5.7	54	82	5	153	35	21	9	33	1.86
55334004--55334348	27	12.8	27	88	3	419	28	22	8	40	1.82
55335588--55335635	25	1.9	25	86	0	69	33	25	16	25	1.96
55335679--55335737	20	3.0	20	92	0	100	35	11	20	32	1.89
55335788--55335907	24	5.0	24	90	3	170	28	22	22	26	1.99
55336099--55336192	31	3.1	31	96	1	172	39	14	22	23	1.91
55338999--55339177	27	6.7	27	85	4	213	41	19	7	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55338999--55339231	54	4.3	55	81	5	228	40	20	8	30	1.81
55338999--55339231	81	2.9	80	81	8	240	40	20	8	30	1.81
55339161--55339235	27	2.8	27	87	4	107	38	24	10	26	1.88
55339196--55339358	54	3.0	54	86	3	150	30	22	11	36	1.89
55339227--55339483	27	9.5	27	87	3	331	27	24	8	40	1.84
55358726--55358838	40	2.8	40	82	5	138	23	23	29	24	1.99
55369468--55369634	40	4.2	40	81	2	176	24	27	22	25	2.00
55369484--55369634	80	1.9	79	83	6	198	23	27	22	25	2.00
55372479--55372531	26	2.0	26	100	0	106	47	18	11	22	1.81
55376174--55376206	13	2.6	13	90	4	50	39	0	12	48	1.40
55388823--55388855	16	2.1	16	94	0	57	54	0	6	39	1.25
55390464--55390511	25	1.9	25	100	0	96	33	8	12	45	1.72
55390578--55390659	41	2.0	41	97	0	155	46	7	13	32	1.71
55391163--55391306	58	2.5	58	86	5	184	54	2	0	43	1.17
55394422--55394572	40	3.8	40	74	13	123	26	23	27	22	2.00
55394503--55394604	40	2.5	40	82	0	114	23	24	28	23	2.00
55396337--55396450	27	4.3	27	71	18	87	17	14	17	50	1.79
55398065--55398097	5	6.6	5	100	0	66	18	0	0	81	0.68
55400316--55400420	54	1.9	54	94	0	183	49	13	16	20	1.79
55404101--55404201	23	4.5	22	83	10	123	22	22	19	34	1.96
55404077--55404228	45	3.3	46	81	8	157	24	23	21	30	1.99
55409874--55409938	29	2.2	29	97	0	121	29	16	27	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55410039--55410071	2	16.5	2	100	0	66	48	0	0	51	1.00
55417159--55417223	29	2.2	29	97	0	121	29	16	27	26	1.97
55417330--55417356	2	13.5	2	100	0	54	48	0	0	51	1.00
55419342--55419583	43	5.7	43	78	6	267	29	19	23	28	1.98
55419342--55419575	129	1.8	128	83	4	310	29	19	23	27	1.98
55420270--55420386	6	19.3	6	69	18	73	50	14	16	18	1.78
55420279--55420386	30	3.5	31	88	3	157	50	13	16	18	1.77
55420523--55420624	27	3.8	26	85	5	123	35	21	24	18	1.96
55420783--55420847	22	3.0	22	77	8	69	33	21	23	21	1.97
55421300--55421604	27	11.3	27	86	1	335	26	18	20	35	1.95
55421608--55421805	81	2.4	81	87	0	261	39	7	23	30	1.81
55421608--55421805	27	7.3	27	82	2	218	39	7	23	30	1.81
55421645--55421834	81	2.3	80	79	3	218	38	7	21	32	1.81
55421784--55422063	54	5.2	54	81	6	273	31	9	19	39	1.84
55421883--55422063	27	6.7	27	84	3	249	30	9	20	38	1.86
55424021--55424101	6	13.0	6	73	17	67	50	14	14	19	1.78
55424020--55424101	31	2.6	31	90	1	128	51	14	14	19	1.77
55424238--55424339	27	3.8	26	88	5	132	36	21	23	18	1.95
55424498--55424562	22	3.0	22	75	8	69	33	21	23	21	1.97
55424989--55425317	27	12.3	27	85	3	355	26	19	19	34	1.95
55425322--55425518	27	7.3	27	84	3	218	39	8	24	28	1.84
55425322--55425518	80	2.4	81	85	2	245	39	8	24	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55425366--55425538	80	2.1	81	82	2	213	39	8	20	31	1.83
55425571--55425776	27	7.7	27	81	9	108	30	7	20	41	1.80
55425497--55425724	110	2.1	107	81	5	253	31	10	18	39	1.84
55425570--55425776	80	2.6	81	82	6	242	30	7	20	41	1.80
55425597--55425776	27	6.7	27	83	3	220	31	8	20	40	1.82
55425570--55425776	54	3.9	54	83	2	238	30	7	20	41	1.80
55434540--55434776	129	1.8	129	83	1	314	26	19	25	29	1.99
55434540--55434784	43	5.7	43	82	3	269	26	19	25	29	1.98
55438467--55438641	46	3.8	46	73	13	160	29	27	20	22	1.99
55441004--55441092	30	3.0	30	80	8	101	57	15	16	10	1.65
55441004--55441083	15	5.4	15	80	7	92	58	13	17	10	1.62
55441015--55441092	15	5.2	15	78	9	79	56	15	16	11	1.67
55444053--55444225	45	3.8	46	79	15	216	28	29	20	20	1.98
55444061--55444229	91	1.8	91	94	3	304	27	30	21	20	1.98
55446244--55446327	29	2.9	29	82	10	100	57	15	16	10	1.65
55446240--55446318	15	5.4	15	80	10	92	59	12	17	10	1.60
55446251--55446327	15	5.2	15	80	9	79	57	14	16	11	1.66
55449228--55449398	92	1.8	93	94	1	308	27	30	22	19	1.98
55449220--55449394	46	3.8	46	81	11	223	28	29	21	20	1.98
55452995--55453093	40	2.5	40	82	12	123	23	26	29	21	1.99
55453024--55453125	40	2.5	40	85	0	123	23	25	28	22	1.99
55460295--55460478	40	4.6	39	75	6	138	26	23	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55460335--55460523	80	2.4	81	77	4	186	23	24	29	22	1.99
55464900--55464942	8	5.4	8	82	0	50	48	16	23	11	1.78
55464900--55464942	16	2.7	16	88	0	68	48	16	23	11	1.78
55465160--55465267	28	3.8	29	85	4	132	28	15	28	26	1.96
55474962--55474998	19	1.9	19	94	0	65	21	24	18	35	1.96
55482444--55482547	28	3.7	28	87	2	138	25	15	31	27	1.95
55496040--55496104	27	2.4	28	84	2	78	44	15	12	27	1.82
55496508--55496545	19	2.0	19	90	10	60	21	7	0	71	1.11
55501438--55501474	19	2.0	19	89	5	58	16	32	18	32	1.93
55504144--55504182	16	2.4	17	95	4	71	7	5	38	48	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318