genome.fa.s2.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  173  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53836045--53836128	25	3.4	24	83	8	98	29	22	22	25	1.99
53836334--53836411	31	2.5	31	93	4	131	32	15	26	25	1.95
53838025--53838078	24	2.2	24	80	6	65	18	25	31	24	1.97
53839346--53839410	32	2.0	32	96	0	121	30	21	6	41	1.77
53839349--53839421	32	2.4	29	84	8	94	27	23	4	45	1.71
53845074--53845153	27	2.9	27	85	5	99	40	16	10	33	1.82
53845083--53845172	27	3.3	27	84	3	110	40	16	10	33	1.82
53845178--53845387	27	7.8	27	85	2	271	29	23	8	38	1.84
53845339--53845589	27	9.3	27	77	7	136	38	19	8	33	1.83
53845366--53845504	54	2.6	54	81	5	165	39	21	7	30	1.82
53845381--53845534	80	1.9	81	84	9	208	40	20	9	30	1.83
53845375--53845594	27	8.1	27	76	8	144	40	18	8	32	1.81
53845635--53845712	27	2.9	27	77	11	88	35	21	20	21	1.96
53846860--53846907	25	1.9	25	86	0	69	33	25	16	25	1.96
53846946--53847002	9	5.9	9	73	15	51	35	8	21	35	1.84
53846944--53847006	20	3.2	20	95	0	117	36	12	19	31	1.89
53847060--53847226	24	7.0	23	87	6	228	29	22	21	26	1.99
53847060--53847226	47	3.5	47	88	4	230	29	22	21	26	1.99
53847060--53847225	71	2.3	71	91	3	262	28	22	21	26	1.99
53847419--53847482	31	2.1	31	90	0	101	35	15	23	25	1.94
53857445--53857573	46	2.8	46	96	0	231	28	29	22	19	1.98
53863344--53863492	12	12.4	13	74	18	121	48	14	16	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53863332--53863467	6	22.8	6	76	12	138	49	13	16	20	1.79
53863332--53863492	30	5.4	30	87	2	225	48	13	16	21	1.80
53863610--53863691	27	3.1	26	80	5	83	36	21	23	18	1.95
53863848--53863906	22	2.7	22	81	0	64	32	22	25	20	1.98
53863994--53864076	27	3.1	26	87	5	112	38	21	20	19	1.93
53864275--53864415	27	5.3	27	84	3	169	25	22	18	33	1.97
53864264--53864394	53	2.5	53	83	6	122	26	22	19	31	1.98
53864279--53864406	53	2.4	54	88	5	181	25	23	17	33	1.96
53864424--53865007	27	21.3	27	82	8	615	39	8	24	27	1.83
53864695--53864768	37	2.0	37	94	0	130	41	6	27	24	1.79
53864668--53864794	64	2.0	64	90	6	204	40	7	26	25	1.81
53865066--53865261	107	1.8	108	84	3	270	31	8	20	40	1.82
53865003--53865261	27	9.6	27	78	2	198	30	8	20	39	1.83
53865110--53865268	54	3.0	54	86	0	221	30	7	21	40	1.81
53867225--53867254	15	2.0	15	93	0	51	13	23	13	50	1.77
53874263--53874488	120	1.9	120	80	10	266	26	26	20	26	1.99
53874263--53874488	40	5.6	41	83	6	218	26	26	20	26	1.99
53874263--53874488	80	2.8	80	80	7	262	26	26	20	26	1.99
53877331--53877384	22	2.5	22	84	3	83	16	27	25	29	1.97
53880658--53880721	30	2.1	30	91	0	101	23	18	23	34	1.96
53888575--53888680	52	2.0	52	96	0	194	30	4	21	43	1.73
53894296--53894396	28	3.5	28	84	4	103	28	13	27	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53894325--53894396	29	2.5	29	91	6	112	30	13	26	29	1.94
53899724--53899940	46	4.6	46	74	13	165	29	18	28	23	1.98
53899721--53899981	140	1.9	140	81	3	319	29	19	28	22	1.98
53902486--53902552	24	2.8	24	86	2	89	43	10	23	22	1.84
53904390--53904783	50	7.8	50	80	4	400	25	17	25	31	1.97
53909286--53909663	190	2.0	190	99	0	747	32	19	14	34	1.91
53916526--53916563	13	2.9	13	92	0	58	44	2	18	34	1.64
53918418--53918455	2	19.0	2	100	0	76	50	0	0	50	1.00
53928798--53928850	27	2.0	27	88	0	79	37	20	18	22	1.94
53938596--53938707	46	2.5	44	88	7	154	25	25	20	29	1.99
53939152--53939227	30	2.6	30	76	2	91	34	26	10	28	1.90
53939848--53939892	20	2.2	20	100	0	90	33	15	13	37	1.86
53946200--53946387	40	4.7	40	89	1	270	26	28	21	23	1.99
53946180--53946391	80	2.7	79	88	3	309	27	27	20	24	1.99
53949666--53949833	46	3.6	45	76	6	174	23	28	19	29	1.98
53949666--53949836	94	1.8	92	85	5	236	23	28	19	28	1.98
53951570--53951742	46	3.7	46	79	10	199	22	20	27	29	1.98
53951567--53951737	93	1.8	93	92	0	288	22	20	28	28	1.98
53954004--53954059	27	2.0	27	86	3	76	39	17	8	33	1.81
53954013--53954112	27	3.7	28	80	9	100	40	19	10	31	1.84
53954095--53954156	27	2.3	27	85	0	79	37	27	6	29	1.82
53954054--53954355	81	3.7	81	77	0	246	31	22	8	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53954108--53954318	27	7.9	26	87	2	224	27	23	7	40	1.82
53954081--53954326	107	2.3	108	80	2	289	30	23	7	38	1.83
53954108--53954318	54	3.9	54	85	3	273	27	23	7	40	1.82
53954215--53954490	27	10.1	27	80	5	117	36	19	8	35	1.82
53954095--53954344	54	4.6	54	81	3	171	30	22	8	39	1.82
53954008--53954357	81	4.3	81	75	4	240	32	21	8	37	1.84
53954296--53954501	81	2.5	83	73	4	195	38	18	9	33	1.83
53954269--53954490	27	8.1	27	79	5	151	39	19	8	32	1.82
53954552--53954639	27	3.3	27	85	3	97	34	21	25	19	1.96
53954543--53954643	27	3.7	26	80	10	96	32	23	22	20	1.98
53955445--53955568	26	4.8	26	93	1	214	26	24	23	25	2.00
53955713--53955804	42	2.2	42	92	0	148	29	14	21	34	1.93
53957604--53957667	22	2.9	22	81	4	76	42	25	15	17	1.88
53957626--53957743	27	4.6	27	75	9	86	43	20	21	15	1.88
53962542--53963144	301	2.0	301	100	0	1206	32	23	12	31	1.92
53966271--53966308	16	2.5	15	95	4	67	5	13	0	81	0.85
53966355--53966412	29	2.0	29	100	0	116	48	20	10	20	1.79
53967429--53967497	14	4.6	14	75	18	59	76	0	7	15	0.99
53967441--53967465	10	2.5	10	100	0	50	80	0	12	8	0.92
53967424--53967497	23	3.1	24	80	5	80	75	0	8	16	1.02
53967475--53967517	17	2.4	18	76	3	52	74	0	0	25	0.82
53967550--53967601	22	2.5	20	82	11	68	73	1	1	23	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53970249--53970418	84	2.0	84	97	0	322	34	18	20	27	1.96
53974821--53974989	41	4.1	41	76	8	139	25	28	21	23	1.99
53974843--53974990	41	3.6	41	78	7	167	26	27	22	23	1.99
53983893--53984322	152	2.8	152	87	3	618	30	20	21	27	1.98
53984618--53984644	10	2.7	10	100	0	54	59	11	0	29	1.32
53984920--53984972	21	2.5	21	87	6	72	45	24	1	28	1.64
53984969--53985041	29	2.5	29	76	10	69	46	26	4	23	1.70
53985074--53985129	21	2.6	21	88	2	76	51	26	0	21	1.48
53985470--53985505	3	12.0	3	100	0	72	66	0	0	33	0.92
53987125--53987202	39	2.0	38	90	2	120	39	14	3	42	1.63
53989464--53989510	24	2.0	24	95	0	85	27	21	8	42	1.81
53989721--53989827	47	2.5	40	78	20	135	42	0	3	53	1.18
53989731--53989825	47	2.0	47	97	0	181	45	0	4	50	1.21
53989793--53989859	29	2.3	29	87	7	91	46	0	0	53	1.00
53989746--53989856	39	2.9	39	72	10	113	46	0	1	51	1.11
53990129--53990283	9	17.2	9	85	2	204	45	21	1	31	1.60
53992039--53992073	12	2.9	12	95	0	61	37	8	22	31	1.85
53995824--53995885	21	3.0	21	87	0	88	27	20	50	1	1.58
53995826--53995896	21	3.4	21	84	3	63	28	21	47	2	1.64
54002741--54002797	18	3.1	18	80	14	71	12	3	0	84	0.75
54002747--54002797	19	2.7	19	85	14	79	11	3	0	84	0.75
54002737--54002802	24	2.8	23	84	13	82	12	4	0	83	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54002737--54002802	21	3.2	20	74	21	64	12	4	0	83	0.79
54003683--54003892	118	1.8	115	95	3	384	22	17	31	29	1.96
54008336--54008376	21	2.0	21	85	0	55	73	7	7	12	1.25
54017314--54017338	9	2.8	9	100	0	50	92	0	0	8	0.40
54023271--54023358	6	14.3	6	71	17	65	46	14	19	19	1.84
54023271--54023358	19	4.8	18	70	18	65	46	14	19	19	1.84
54023280--54023358	31	2.5	31	89	0	113	46	13	20	18	1.83
54023501--54023562	27	2.3	27	81	10	74	35	20	24	19	1.96
54025491--54025564	29	2.6	29	95	0	139	27	31	14	27	1.95
54025432--54025564	58	2.3	58	80	2	133	24	33	17	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318