genome.fa.s2.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  170  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52876021--52876196	46	3.8	45	79	10	194	22	21	28	28	1.99
52879783--52879989	53	3.8	53	79	3	225	38	17	23	20	1.93
52883396--52883469	29	2.6	29	95	0	139	27	14	31	27	1.95
52883453--52883528	29	2.6	29	77	4	82	22	21	35	21	1.96
52891249--52891322	29	2.6	29	95	0	139	27	14	31	27	1.95
52891306--52891381	29	2.6	29	77	4	82	22	21	35	21	1.96
52894454--52894615	39	4.2	39	91	2	254	23	19	32	24	1.98
52894465--52894615	77	1.9	79	93	2	261	23	20	31	23	1.98
52894454--52894645	39	4.9	39	88	1	242	23	20	31	23	1.98
52902427--52902589	39	4.2	39	93	0	263	23	20	31	24	1.98
52902427--52902619	39	4.9	39	90	0	251	23	21	31	23	1.98
52905136--52905388	43	5.9	43	92	0	416	11	24	33	31	1.91
52905557--52905655	29	3.4	29	70	10	94	24	19	26	30	1.98
52905586--52905684	29	3.4	29	68	15	87	23	15	31	30	1.95
52905554--52905722	58	2.9	58	91	0	268	23	17	30	29	1.97
52907227--52907266	13	3.0	13	80	20	55	32	2	12	52	1.52
52909334--52909524	40	4.8	39	78	7	172	23	28	24	24	1.99
52909374--52909524	78	1.9	80	85	5	209	23	28	23	25	1.99
52917050--52917179	40	3.3	39	79	9	115	23	27	23	24	2.00
52917076--52917213	40	3.5	40	81	6	131	21	28	24	25	1.99
52921945--52922037	29	3.2	29	95	1	161	31	16	27	24	1.96
52921941--52922074	58	2.4	57	82	7	157	27	15	32	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52929871--52929935	29	2.2	29	91	2	103	32	16	27	23	1.96
52934061--52934147	24	3.6	24	96	0	165	21	17	25	35	1.95
52934061--52934169	48	2.3	48	91	3	175	24	17	23	33	1.96
52934061--52934169	24	4.5	24	90	2	157	24	17	23	33	1.96
52941836--52941898	24	2.6	24	100	0	126	20	17	26	34	1.95
52944296--52944452	46	3.4	45	82	10	160	24	29	19	26	1.98
52947513--52947599	29	3.0	29	83	8	115	29	28	12	28	1.93
52962466--52962574	24	4.6	23	85	7	137	33	23	17	24	1.96
52962466--52962574	48	2.3	48	91	3	175	33	23	17	24	1.96
52970349--52970457	24	4.6	23	85	7	137	33	23	17	24	1.96
52970349--52970457	48	2.3	48	91	3	175	33	23	17	24	1.96
52975668--52975782	29	4.0	29	81	8	121	31	26	13	27	1.94
52975659--52975774	57	2.0	57	81	6	137	31	28	13	26	1.94
52975993--52976043	24	2.1	24	82	7	59	11	15	17	54	1.70
52978971--52979074	40	2.6	40	92	0	172	25	27	24	23	2.00
52987031--52987245	39	5.5	39	88	5	276	25	29	22	22	1.99
52987031--52987245	79	2.7	78	87	5	276	25	29	22	22	1.99
52990009--52990056	25	2.1	22	85	14	62	29	25	22	22	1.99
52995679--52995840	39	4.2	39	90	1	245	24	32	20	22	1.98
52999134--52999279	67	2.2	65	84	7	181	21	28	17	33	1.95
53003074--53003110	9	4.1	9	92	0	65	29	10	13	45	1.77
53003825--53003849	11	2.3	11	100	0	50	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53007010--53007204	55	3.6	53	75	3	147	37	19	22	20	1.94
53010004--53010172	40	4.2	40	80	4	173	23	26	21	28	1.99
53018081--53018223	40	3.7	39	81	7	148	24	27	21	26	1.99
53018113--53018223	38	2.9	37	82	9	125	24	27	21	27	1.99
53023481--53023631	40	3.8	40	77	6	146	27	23	26	22	2.00
53023518--53023647	40	3.2	40	77	4	138	24	23	27	23	2.00
53027342--53027492	40	3.8	40	75	13	125	26	23	27	22	2.00
53027379--53027508	40	3.2	40	75	4	129	23	23	28	23	2.00
53029776--53029832	16	3.7	16	80	17	75	50	0	0	49	1.00
53029776--53029839	13	4.4	14	80	20	69	51	0	0	48	1.00
53029776--53029839	30	2.2	29	94	2	110	51	0	0	48	1.00
53029779--53029846	13	4.3	16	78	16	63	51	0	0	48	1.00
53031333--53031429	39	2.4	41	75	16	96	62	4	3	29	1.29
53031409--53031452	12	3.6	12	84	3	52	59	4	0	36	1.18
53031679--53031754	3	25.3	3	72	19	54	64	1	3	30	1.20
53031671--53031754	29	3.0	28	75	13	82	63	1	3	32	1.19
53031679--53031756	18	4.4	17	73	9	66	65	1	3	29	1.18
53032078--53032122	18	2.4	19	85	7	65	64	28	0	6	1.19
53032096--53032140	23	2.0	22	82	4	54	55	31	2	11	1.47
53032207--53032255	22	2.4	19	76	23	55	12	8	55	24	1.64
53032217--53032260	13	3.7	13	71	22	51	15	13	52	18	1.75
53032615--53033478	44	19.8	44	74	10	643	25	23	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53032601--53032845	129	1.9	129	93	6	426	24	24	20	31	1.98
53032821--53033473	132	5.0	132	96	1	1226	24	23	20	31	1.98
53033525--53033720	67	2.9	68	86	6	276	26	22	23	27	2.00
53033824--53034299	131	3.6	131	87	5	669	19	21	22	36	1.95
53033738--53034287	44	12.7	43	74	7	355	20	22	21	35	1.96
53034351--53034477	66	1.9	66	96	0	236	35	11	19	33	1.88
53035618--53035664	8	5.9	8	76	18	53	0	0	14	85	0.61
53035619--53035663	16	2.9	16	83	3	65	0	0	13	86	0.57
53035603--53035664	16	3.8	16	76	4	61	4	0	12	82	0.82
53035619--53035664	24	1.9	24	91	8	76	0	0	15	84	0.62
53035661--53035696	6	6.0	6	100	0	72	0	33	16	50	1.46
53040848--53041014	39	4.1	39	67	23	92	60	5	4	29	1.38
53040998--53041037	20	2.0	20	90	0	62	60	2	0	37	1.11
53040830--53041058	127	1.8	125	84	6	293	60	5	3	30	1.37
53041261--53041346	3	28.3	3	73	19	65	65	1	3	30	1.17
53041261--53041343	12	6.8	12	76	16	73	65	1	3	30	1.17
53041266--53041346	18	4.4	18	79	13	76	65	1	3	29	1.17
53041261--53041347	27	3.4	27	71	19	78	65	1	3	29	1.16
53041678--53041716	19	2.0	20	90	5	62	69	23	0	7	1.14
53041673--53041748	22	3.4	22	84	10	84	60	27	1	10	1.38
53041819--53041881	22	3.0	19	88	11	56	14	9	52	23	1.71
53041829--53041881	22	2.4	22	100	0	106	15	11	52	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53042215--53042298	26	3.2	26	96	0	150	34	4	23	36	1.76
53043731--53043805	26	2.8	26	83	4	78	36	22	10	30	1.88
53043909--53044048	27	5.2	27	86	2	174	18	24	22	35	1.96
53048011--53048041	16	1.9	16	93	0	53	70	9	3	16	1.26
53048514--53048546	12	2.8	12	100	0	66	36	9	6	48	1.60
53049926--53049962	13	2.8	13	100	0	74	37	5	16	40	1.71
53054110--53054238	7	18.1	7	70	12	75	37	41	0	20	1.53
53054281--53054365	21	3.9	21	75	11	89	44	25	1	28	1.61
53054265--53054354	46	2.0	46	97	0	171	42	25	2	30	1.67
53054320--53054373	7	7.7	7	78	0	54	50	25	0	24	1.50
53054529--53054749	41	5.4	41	94	0	381	18	24	23	33	1.97
53054526--53054790	123	2.2	123	87	2	390	20	23	22	33	1.97
53059801--53059987	40	4.7	40	97	0	356	26	25	22	25	2.00
53064463--53064496	16	2.1	17	88	5	52	20	0	8	70	1.13
53069559--53069707	80	1.9	80	81	2	183	22	30	24	22	1.99
53069600--53069707	40	2.7	38	85	8	128	21	29	25	23	1.99
53077581--53077761	39	4.6	38	78	10	143	23	25	23	27	2.00
53077613--53077761	78	1.9	78	83	2	192	22	25	24	27	2.00
53079450--53079732	71	3.9	71	78	15	317	32	21	15	30	1.95
53079432--53079996	160	3.6	161	92	6	961	34	20	16	28	1.94
53079759--53079892	71	1.9	71	90	0	214	29	23	16	30	1.96
53092310--53092369	11	5.2	11	75	16	50	60	3	3	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53092309--53092368	25	2.5	24	76	15	68	60	3	3	33	1.30
53093065--53093092	14	2.0	14	100	0	56	42	0	57	0	0.99
53102718--53102743	1	26.0	1	100	0	52	0	0	0	100	0.00
53108670--53108699	14	2.1	14	93	0	51	80	0	20	0	0.72
53109934--53109974	4	10.2	4	87	10	57	78	21	0	0	0.76
53112429--53112475	25	1.9	25	82	4	60	55	2	2	40	1.24
53114755--53114839	27	3.1	27	96	0	152	23	10	25	40	1.87
53119404--53119434	14	2.3	14	94	5	55	67	0	3	29	1.06
53122277--53122302	6	4.3	6	100	0	52	0	15	15	69	1.20
53122290--53122372	40	2.1	40	100	0	166	12	16	12	59	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318