genome.fa.s2.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  160  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49371619--49371702	6	13.3	6	82	7	87	17	2	3	76	1.04
49371631--49371715	38	2.2	37	89	8	127	17	2	3	76	1.04
49379899--49379974	20	3.8	21	73	13	61	26	25	31	17	1.97
49389814--49389986	47	3.7	47	78	11	185	26	18	31	23	1.97
49389814--49389986	94	1.8	95	86	6	253	26	18	31	23	1.97
49399411--49399513	43	2.4	42	81	9	111	22	21	26	30	1.99
49406234--49406306	27	2.6	28	97	2	139	28	12	26	32	1.92
49413918--49414047	40	3.2	40	80	4	138	23	24	29	23	1.99
49417481--49417530	10	5.0	10	82	0	55	14	16	2	68	1.31
49417483--49417538	20	2.8	20	86	0	76	16	12	1	69	1.27
49420345--49420378	15	2.3	15	100	0	68	29	26	8	35	1.87
49423845--49423971	62	2.0	64	89	3	195	48	5	19	26	1.71
49424305--49424510	110	1.9	110	83	2	270	31	15	15	37	1.89
49427481--49427610	40	3.3	40	80	7	140	23	26	24	26	2.00
49427507--49427610	39	2.6	40	84	1	138	23	26	23	26	2.00
49427512--49427658	79	1.9	80	82	7	192	25	27	21	25	1.99
49429209--49429258	21	2.5	20	78	12	57	4	24	2	70	1.15
49439472--49439507	17	2.1	17	94	0	63	27	0	13	58	1.36
49439967--49440018	26	2.1	24	89	7	77	38	1	0	59	1.08
49440740--49440880	68	2.1	68	100	0	282	26	14	17	41	1.87
49451008--49451064	18	3.1	19	82	10	64	40	0	5	54	1.23
49451008--49451063	19	3.1	18	84	7	60	41	0	5	53	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49451142--49451173	9	3.6	9	91	0	55	31	0	12	56	1.37
49463059--49463099	18	2.3	18	100	0	82	17	17	12	53	1.72
49466450--49466624	40	4.4	40	92	0	278	29	26	19	24	1.98
49474077--49474252	67	2.6	67	90	2	266	22	26	14	36	1.93
49474204--49474347	64	2.2	64	87	0	207	26	27	14	31	1.95
49479014--49479084	18	3.8	18	76	20	74	33	11	21	33	1.89
49479835--49479864	15	2.0	15	93	0	51	10	13	3	73	1.21
49483194--49483344	40	3.8	40	77	13	141	25	24	27	22	2.00
49488378--49488436	28	2.1	28	100	0	118	16	11	25	45	1.82
49489057--49489118	27	2.3	27	91	0	97	27	16	16	40	1.89
49489074--49489224	54	2.8	54	86	2	160	29	9	19	41	1.83
49489072--49489224	81	1.9	81	86	5	220	30	9	19	40	1.83
49489101--49489224	27	4.6	27	85	2	169	30	7	20	41	1.79
49489208--49489278	27	2.6	27	75	4	72	29	7	26	36	1.83
49489101--49489224	54	2.3	54	92	0	203	30	7	20	41	1.79
49489098--49489251	81	1.9	81	79	2	175	31	7	21	38	1.82
49492488--49492546	28	2.1	28	100	0	118	16	11	25	45	1.82
49493166--49493227	27	2.3	27	91	0	97	27	16	16	40	1.89
49493183--49493333	54	2.8	54	86	2	160	29	9	19	41	1.83
49493181--49493333	81	1.9	81	86	5	220	30	9	19	40	1.83
49493210--49493333	27	4.6	27	85	2	169	30	7	20	41	1.79
49493317--49493387	27	2.6	27	75	4	72	29	7	26	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49493210--49493333	54	2.3	54	92	0	203	30	7	20	41	1.79
49493207--49493360	81	1.9	81	79	2	175	31	7	21	38	1.82
49496559--49496617	28	2.1	28	100	0	118	16	11	25	45	1.82
49496884--49496908	8	3.1	8	100	0	50	24	12	28	36	1.91
49497246--49497307	27	2.3	27	91	0	97	27	16	16	40	1.89
49497263--49497413	54	2.8	54	86	2	160	29	9	19	41	1.83
49497261--49497413	81	1.9	81	86	5	220	30	9	19	40	1.83
49497290--49497413	27	4.6	27	85	2	169	30	7	20	41	1.79
49497397--49497467	27	2.6	27	75	4	72	29	7	26	36	1.83
49497290--49497413	54	2.3	54	92	0	203	30	7	20	41	1.79
49497287--49497440	81	1.9	81	79	2	175	31	7	21	38	1.82
49505106--49505269	43	3.8	43	79	7	147	26	29	19	25	1.99
49511946--49511975	15	1.9	16	93	6	53	53	0	23	23	1.46
49512836--49512895	6	10.0	6	94	0	102	80	0	1	18	0.80
49515110--49515214	33	3.2	33	100	0	210	11	37	33	18	1.86
49517594--49517680	43	2.0	42	86	2	120	29	17	21	31	1.96
49517606--49517900	43	6.6	42	78	13	259	22	17	29	29	1.97
49517602--49517863	87	2.9	85	83	8	281	21	18	29	30	1.97
49517748--49517856	54	2.0	55	91	5	177	19	17	32	31	1.95
49517708--49517899	97	2.0	98	88	3	289	20	17	31	30	1.96
49517977--49518059	31	2.6	31	78	3	85	59	19	6	15	1.57
49518733--49518761	14	2.1	14	93	6	51	58	6	0	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49521475--49521582	26	4.2	26	90	0	171	31	7	24	37	1.83
49523185--49523343	27	5.9	27	82	10	175	18	24	22	35	1.96
49523185--49523325	54	2.6	53	92	2	219	17	24	23	34	1.96
49528594--49528701	26	4.2	26	92	0	180	33	7	23	36	1.83
49530303--49530451	27	5.6	27	83	7	171	19	24	20	35	1.96
49530296--49530451	54	2.9	53	89	2	215	19	24	21	34	1.96
49534203--49534244	17	2.5	17	92	0	66	40	2	9	47	1.49
49534185--49534888	9	79.4	9	80	4	770	38	2	12	47	1.53
49534238--49534870	53	11.9	53	85	3	774	38	2	12	47	1.53
49534176--49534888	62	11.8	62	87	5	702	38	2	12	47	1.53
49534212--49534888	44	15.1	45	84	6	757	38	2	12	47	1.54
49534993--49535078	15	5.9	15	74	15	90	54	0	1	44	1.07
49535005--49535078	29	2.6	29	95	0	130	52	0	1	45	1.09
49535252--49535322	24	3.0	24	87	0	106	42	8	19	29	1.81
49536640--49536687	24	2.0	24	100	0	96	25	16	8	50	1.73
49540256--49540331	22	3.3	22	67	16	64	30	10	31	27	1.90
49540234--49540406	47	3.7	47	93	0	283	32	6	31	28	1.84
49540248--49540320	25	3.0	25	66	18	73	31	8	30	30	1.86
49542389--49542656	43	6.3	43	94	0	439	14	21	30	33	1.93
49542785--49542884	28	3.6	27	74	8	83	22	17	33	28	1.96
49545538--49545638	28	3.5	30	82	6	118	29	14	26	28	1.95
49545567--49545642	29	2.7	28	76	13	75	30	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49553428--49553528	28	3.5	30	82	6	118	29	14	26	28	1.95
49553457--49553532	29	2.7	28	76	13	75	30	14	26	28	1.95
49557296--49557468	47	3.7	47	92	0	274	32	6	31	28	1.84
49557310--49557382	25	3.0	25	66	18	73	31	8	30	30	1.86
49558990--49559035	19	2.3	20	85	7	67	34	0	39	26	1.57
49560320--49560368	14	3.4	14	72	5	53	20	4	38	36	1.72
49560316--49560371	29	1.9	29	100	0	112	19	7	37	35	1.79
49560951--49561050	40	2.5	41	86	1	130	26	19	13	42	1.87
49560963--49561050	41	2.2	40	87	2	122	26	17	14	42	1.87
49568769--49568956	40	4.7	40	96	0	351	25	27	22	24	2.00
49568736--49568952	40	5.5	40	93	2	350	24	27	23	24	2.00
49576846--49577031	40	4.7	40	95	2	333	25	26	23	24	2.00
49576813--49577031	80	2.8	79	92	5	356	25	26	22	25	2.00
49584588--49584763	46	3.8	46	81	10	232	20	21	29	28	1.98
49584584--49584755	93	1.8	93	96	0	317	20	22	30	27	1.98
49587707--49587775	15	4.6	15	83	0	84	11	17	13	57	1.64
49587698--49587785	30	3.0	30	81	8	99	10	17	15	56	1.66
49590008--49590157	41	3.7	41	83	1	212	20	23	28	28	1.99
49612691--49612799	37	2.9	37	91	0	173	27	32	18	22	1.97
49612946--49613080	48	2.8	48	96	0	243	31	28	6	33	1.83
49613050--49613214	47	3.5	47	97	0	303	25	29	12	32	1.93
49613096--49613170	22	3.3	22	64	29	57	25	30	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49613118--49613195	25	3.2	25	64	29	69	29	29	10	30	1.90
49613122--49613196	23	3.2	23	63	29	59	28	29	10	32	1.90
49617294--49617642	40	8.8	40	89	1	533	25	26	22	25	2.00
49618910--49619018	37	2.9	37	93	0	182	27	31	18	22	1.97
49619165--49619299	48	2.8	48	94	3	227	31	28	6	34	1.83
49619270--49619476	47	4.5	47	93	3	366	25	29	13	31	1.93
49619270--49619476	91	2.2	93	94	2	364	25	29	13	31	1.93
49619314--49619385	22	3.3	22	63	27	53	26	30	13	29	1.94
49619357--49619435	24	3.3	24	65	28	69	25	31	12	30	1.93
49626022--49626078	30	1.9	30	85	0	78	38	8	22	29	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318