genome.fa.s2.2.7.7.80.10.50.1000.280.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  280  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88556230--88556346	10	11.9	10	71	23	65	59	2	0	36	1.17
88556182--88556377	67	2.9	67	89	3	270	61	3	1	34	1.18
88556803--88556869	19	3.4	19	72	15	57	34	4	1	59	1.26
88556869--88556942	27	2.7	28	81	12	82	43	5	2	48	1.40
88556958--88556992	18	1.9	18	88	0	52	20	0	5	74	1.02
88558450--88558496	23	2.0	23	84	8	60	42	2	0	55	1.12
88558620--88558678	20	3.0	20	82	2	75	27	1	0	71	0.96
88558929--88558962	2	17.0	2	100	0	68	50	0	0	50	1.00
88559799--88559858	21	2.7	22	75	15	61	45	1	0	53	1.10
88561294--88561340	22	2.2	23	85	11	64	48	6	6	38	1.54
88566235--88566277	20	2.2	20	86	0	59	32	20	2	44	1.65
88567532--88567557	12	2.2	12	100	0	52	92	0	7	0	0.39
88581864--88581889	1	26.0	1	100	0	52	100	0	0	0	0.00
88581960--88582155	97	2.0	98	96	1	367	28	14	14	42	1.84
88597093--88597118	13	2.0	13	100	0	52	38	23	0	38	1.55
88597599--88597644	24	1.9	24	82	8	58	34	2	4	58	1.30
88598186--88598210	3	8.3	3	100	0	50	32	0	0	68	0.90
88600036--88600143	26	4.2	26	89	0	171	34	7	22	36	1.82
88603724--88603930	40	5.2	39	81	4	193	24	26	23	25	2.00
88603724--88603929	80	2.6	80	81	4	229	24	26	23	25	2.00
88611775--88611982	40	5.2	39	81	3	193	24	25	24	25	2.00
88611775--88611981	80	2.6	80	81	3	229	24	26	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88619432--88619515	39	2.2	39	84	4	107	35	19	4	40	1.72
88628592--88628659	21	3.3	21	69	19	54	66	7	11	14	1.44
88628648--88628801	77	2.0	77	93	0	263	35	11	16	37	1.84
88628945--88628992	20	2.5	19	86	6	62	31	4	0	64	1.12
88646926--88647010	44	1.9	44	97	0	161	27	12	20	40	1.89
88652087--88652124	20	1.9	20	89	10	60	68	5	0	26	1.11
88652086--88652130	22	2.1	22	84	8	58	66	8	0	24	1.20
88652948--88652983	17	2.1	17	89	0	54	55	2	0	41	1.14
88655030--88655059	12	2.4	13	94	5	53	0	3	13	83	0.77
88660139--88660231	43	2.2	43	92	3	152	27	6	13	51	1.66
88661962--88662448	241	2.0	241	100	0	974	27	16	15	40	1.89
88664993--88665040	19	2.6	19	83	3	62	33	2	16	47	1.58
88665054--88665146	43	2.2	42	90	5	150	29	5	12	52	1.61
88668620--88668672	20	2.7	19	88	11	72	39	1	3	54	1.29
88668783--88668889	56	2.0	55	87	9	157	44	20	2	31	1.66
88695698--88695722	2	12.5	2	100	0	50	48	0	0	52	1.00
88700767--88700847	29	2.7	29	81	9	83	34	6	9	49	1.61
88700794--88700862	29	2.4	30	85	9	90	31	10	10	47	1.70
88707699--88707763	32	2.0	32	100	0	130	27	9	18	44	1.80
88717943--88717979	18	2.1	18	100	0	74	27	16	5	51	1.66
88722968--88723047	42	1.9	41	92	2	133	25	18	16	40	1.91
88725384--88725428	3	15.0	3	95	0	81	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88726067--88726121	9	6.0	9	74	19	51	67	1	0	30	1.01
88726052--88726119	27	2.5	28	83	11	88	69	2	0	27	1.03
88726052--88726121	20	3.9	18	70	20	56	67	2	0	30	1.05
88732417--88732442	11	2.4	11	100	0	52	84	0	0	15	0.62
88734566--88734599	2	17.5	2	93	6	61	50	0	50	0	1.00
88742581--88742683	21	4.8	21	87	2	143	33	26	25	15	1.95
88742567--88742696	63	2.0	64	85	2	172	35	23	23	17	1.95
88742841--88742938	47	2.1	47	98	0	187	39	21	0	38	1.54
88743123--88743164	15	2.8	15	92	0	75	52	14	0	33	1.42
88744486--88744514	8	3.6	8	100	0	58	62	0	0	37	0.96
88748584--88748613	10	3.0	10	95	0	51	50	6	0	43	1.28
88753201--88753313	40	2.8	40	88	4	158	25	28	22	23	1.99
88755933--88756139	64	3.1	64	61	22	143	30	25	17	26	1.98
88755894--88756181	138	2.1	137	96	0	531	31	24	18	24	1.97
88757969--88758104	26	5.2	26	95	0	227	36	23	5	34	1.77
88763833--88763877	14	3.0	15	77	9	56	24	4	17	53	1.62
88767422--88767513	34	2.7	35	81	11	118	15	22	8	53	1.69
88769932--88770002	26	2.7	26	84	0	88	30	22	11	35	1.89
88780828--88780852	3	8.3	3	100	0	50	68	0	32	0	0.90
88781968--88782000	16	2.0	17	88	5	50	48	6	9	36	1.60
88784264--88784303	4	10.0	4	88	0	62	22	2	25	50	1.62
88791503--88791541	15	2.5	15	83	4	51	48	7	2	41	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88791497--88791542	16	2.8	17	78	15	53	52	6	4	36	1.47
88794577--88794603	13	2.1	13	100	0	54	22	40	7	29	1.81
88795931--88796157	48	4.7	47	87	5	203	24	26	18	29	1.98
88796070--88796145	23	3.2	23	65	31	61	27	23	18	30	1.98
88795982--88796157	96	1.8	96	92	2	300	25	26	18	30	1.98
88807255--88807288	13	2.6	13	90	0	50	44	2	0	52	1.16
88807320--88807354	17	2.1	17	88	0	52	74	5	14	5	1.19
88808871--88809005	39	3.4	39	75	6	121	23	20	27	28	1.99
88815054--88815112	13	4.6	13	87	4	84	44	3	0	52	1.17
88815056--88815112	25	2.2	26	96	3	107	43	3	0	52	1.18
88815142--88815176	17	2.1	17	88	0	52	74	5	14	5	1.19
88816695--88816829	39	3.4	39	75	6	121	23	20	27	28	1.99
88817775--88817876	48	2.1	48	82	10	120	23	26	18	31	1.98
88825370--88825641	48	5.7	48	82	3	253	23	27	19	29	1.98
88829227--88829294	20	3.4	19	70	21	50	69	1	7	22	1.22
88845982--88846022	21	2.0	21	85	0	55	26	14	24	34	1.94
88859295--88859390	48	2.0	48	91	0	156	13	32	15	38	1.87
88867630--88867756	46	2.7	47	86	4	159	27	20	28	23	1.99
88867643--88867897	141	1.8	138	79	9	293	27	20	27	25	1.99
88880583--88880629	25	1.9	25	86	4	69	65	2	6	25	1.27
88880706--88880743	15	2.4	16	87	12	53	60	5	13	21	1.52
88883094--88883133	19	2.1	19	100	0	80	32	32	5	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88887383--88887428	23	2.0	22	84	12	58	50	10	2	36	1.50
88892729--88893147	138	3.1	137	89	1	601	45	5	8	41	1.58
88897648--88897777	40	3.2	40	79	2	145	26	26	23	23	2.00
88901110--88901162	26	2.0	27	82	7	65	24	16	22	35	1.95
88902655--88902746	32	2.9	32	95	1	168	38	23	5	32	1.78
88907562--88907592	12	2.6	12	100	0	62	12	51	25	9	1.70
88909255--88909308	26	2.0	27	82	10	67	24	16	22	37	1.94
88910792--88910888	32	3.0	32	92	5	169	38	22	6	32	1.79
88913794--88913827	17	1.9	18	88	5	52	14	5	17	61	1.52
88914533--88914658	42	3.0	41	74	13	112	23	16	27	31	1.96
88914533--88914697	43	3.8	43	69	14	133	24	16	27	30	1.97
88916244--88916351	56	1.9	56	86	0	153	26	13	24	35	1.93
88919737--88919840	54	1.9	55	94	2	183	25	12	25	35	1.92
88924147--88924209	33	1.9	33	96	0	117	33	12	20	33	1.90
88928117--88928192	36	2.1	36	100	0	152	44	21	0	34	1.52
88928593--88928837	50	4.9	50	86	1	321	24	29	18	27	1.98
88933831--88933855	12	2.1	12	100	0	50	40	16	0	44	1.47
88940914--88940977	30	2.1	30	82	5	76	54	3	0	42	1.16
88943590--88943769	90	2.0	90	94	0	315	37	20	5	37	1.76
88944027--88944082	24	2.3	25	84	3	69	39	16	21	23	1.92
88944978--88945036	30	2.0	29	86	3	82	25	13	27	33	1.93
88944978--88945036	29	2.0	30	83	9	77	25	13	27	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88945345--88945600	47	5.5	45	70	17	200	27	19	30	22	1.98
88945342--88945643	47	6.4	47	71	15	198	27	19	30	22	1.98
88945342--88945796	94	4.8	94	81	7	489	27	20	29	23	1.98
88945345--88945796	46	9.6	46	70	12	271	27	19	29	23	1.98
88950098--88950160	31	2.0	31	90	0	99	38	12	14	34	1.84
88950698--88950726	15	1.9	15	100	0	58	27	20	13	37	1.91
88951751--88951808	8	7.2	8	76	7	55	29	1	18	50	1.57
88951754--88951808	24	2.3	24	93	0	92	29	1	20	49	1.59
88955184--88955212	14	2.1	14	100	0	58	20	0	37	41	1.53
88967148--88967179	6	5.7	6	89	10	50	0	9	0	90	0.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318