genome.fa.s2.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  208  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65452875--65452942	33	2.1	33	100	0	136	27	27	20	23	1.99
65452908--65453051	51	2.8	51	83	9	186	29	28	16	25	1.97
65452829--65452991	83	2.0	82	89	3	247	29	28	17	23	1.97
65455398--65455445	24	2.0	24	95	0	87	43	8	27	20	1.80
65456151--65456181	16	1.9	16	100	0	62	25	6	3	64	1.33
65466098--65466159	28	2.3	27	83	8	72	33	3	24	38	1.71
65466674--65466728	23	2.4	23	96	0	101	16	16	27	40	1.89
65470656--65470715	27	2.3	26	88	8	86	45	3	1	50	1.28
65471044--65471115	16	4.3	18	73	18	66	50	1	1	47	1.18
65471048--65471110	5	11.8	5	77	15	56	53	1	1	42	1.19
65484550--65484610	3	20.3	3	96	0	113	31	0	1	67	1.01
65484925--65484975	24	2.1	23	82	13	59	45	7	3	43	1.51
65491198--65491388	24	8.1	23	89	2	274	28	20	22	28	1.99
65491198--65491390	71	2.7	70	91	2	314	27	20	22	28	1.99
65491447--65491503	9	5.9	9	73	15	51	35	21	8	35	1.84
65491435--65491505	20	3.5	20	94	0	124	32	21	11	35	1.89
65491440--65491494	11	5.4	11	70	16	55	30	20	12	36	1.90
65492873--65492914	22	1.9	22	85	0	57	71	2	14	11	1.24
65496829--65496865	4	9.2	4	87	0	56	72	2	0	24	0.97
65498726--65498757	16	1.9	17	93	6	57	53	0	9	37	1.34
65502984--65503052	11	6.4	11	85	6	70	4	13	24	57	1.53
65502975--65503063	21	4.0	22	77	11	76	4	11	25	58	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65505292--65505434	47	3.0	47	79	9	157	35	18	21	23	1.96
65512406--65512490	43	2.0	43	95	0	152	25	31	20	22	1.98
65517010--65517110	43	2.3	43	94	0	175	23	22	30	22	1.99
65528694--65529042	114	2.9	119	84	9	480	29	10	22	38	1.86
65529876--65529932	26	2.2	26	90	6	89	36	3	10	49	1.55
65529875--65529932	13	4.5	13	76	8	64	36	3	10	50	1.54
65531898--65531951	26	2.1	26	85	0	72	35	14	18	31	1.91
65537547--65537601	21	2.7	21	88	2	85	5	25	23	45	1.74
65537667--65537895	43	5.3	43	90	1	350	27	28	18	26	1.98
65538219--65538252	17	1.9	18	94	5	61	23	29	11	35	1.90
65543543--65543586	19	2.4	18	88	3	61	70	2	0	27	0.99
65544119--65544222	7	14.6	7	69	13	52	38	39	0	22	1.54
65544119--65544210	36	2.6	36	83	8	100	36	41	0	21	1.54
65544286--65544366	21	3.7	21	75	12	81	43	25	2	28	1.68
65544270--65544360	46	2.0	46	95	0	164	40	25	3	30	1.71
65544325--65544378	7	7.7	7	78	0	54	50	25	0	24	1.50
65544535--65544671	41	3.4	41	81	8	165	16	19	22	41	1.90
65544725--65544750	12	2.2	12	100	0	52	46	30	15	7	1.74
65545075--65545207	54	2.5	55	80	4	155	42	0	25	31	1.55
65545075--65545219	55	2.7	53	76	8	148	44	0	26	29	1.55
65549482--65549755	48	5.7	48	87	0	271	26	31	16	25	1.96
65549529--65549759	48	4.8	48	89	0	327	25	31	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65549482--65549759	96	2.9	96	84	0	340	26	31	16	26	1.96
65551173--65551232	22	2.7	22	94	0	102	26	21	13	38	1.90
65552821--65552858	16	2.4	16	95	0	67	42	0	23	34	1.55
65552948--65553184	125	1.9	124	93	0	411	39	8	16	35	1.80
65556808--65556890	41	2.0	41	97	0	157	45	12	6	36	1.66
65559162--65559411	28	8.9	28	83	3	279	28	23	10	37	1.88
65561244--65561324	40	2.0	40	100	0	162	30	9	27	32	1.89
65566399--65566622	40	5.6	40	87	4	317	25	26	23	24	2.00
65566399--65566622	83	2.8	80	89	4	317	25	26	23	24	2.00
65569639--65569708	36	1.9	36	100	0	140	28	25	18	27	1.98
65576371--65576479	37	2.9	37	87	0	164	26	30	19	23	1.98
65576619--65576922	48	6.0	48	89	9	419	30	27	5	35	1.81
65576698--65576912	56	4.0	56	81	14	240	31	27	5	36	1.79
65576650--65576922	104	2.6	105	90	4	405	31	27	5	35	1.80
65578757--65578786	2	15.0	2	100	0	60	50	0	0	50	1.00
65580006--65580145	27	5.2	27	80	11	162	35	22	24	17	1.95
65580006--65580145	54	2.6	54	90	2	219	35	22	24	17	1.95
65581742--65581849	26	4.2	26	93	0	180	36	23	7	33	1.83
65584558--65584650	42	2.2	42	100	0	186	25	27	22	23	2.00
65594136--65594285	44	3.5	45	76	14	163	30	26	19	24	1.98
65594127--65594284	86	1.8	85	85	6	221	31	25	18	24	1.97
65595907--65595947	2	21.0	2	95	5	75	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65595947--65595994	19	2.3	21	86	10	64	77	0	16	6	0.97
65595947--65595994	10	4.7	10	76	5	51	77	0	16	6	0.97
65596019--65596057	16	2.4	16	91	0	60	69	0	30	0	0.89
65598139--65598460	46	7.0	46	94	0	509	40	14	23	20	1.90
65598154--65598513	46	7.7	46	91	1	506	41	15	23	20	1.89
65600330--65600356	2	13.5	2	100	0	54	48	0	0	51	1.00
65601386--65601501	27	4.3	26	86	5	142	37	23	22	16	1.93
65601386--65601501	54	2.1	54	87	3	162	37	23	22	16	1.93
65601915--65601944	16	1.9	15	93	6	51	3	20	23	53	1.60
65603114--65603223	26	4.2	26	97	0	184	36	24	5	33	1.79
65604536--65604713	56	3.2	56	86	0	257	33	22	14	30	1.93
65604735--65604762	2	14.0	2	100	0	56	50	0	0	50	1.00
65627813--65627843	16	1.9	16	93	0	53	77	3	0	19	0.90
65629554--65629579	13	2.0	13	100	0	52	15	53	0	30	1.42
65630358--65630405	21	2.3	22	79	17	57	27	4	14	54	1.59
65630363--65630407	20	2.2	20	85	14	58	24	4	15	55	1.59
65632444--65632608	43	3.9	42	78	9	163	31	27	17	23	1.97
65637878--65637919	2	21.0	2	100	0	84	50	0	0	50	1.00
65641006--65641172	40	4.2	40	79	6	169	26	22	26	24	2.00
65649006--65649133	40	3.2	39	81	6	141	27	21	26	24	1.99
65651804--65651969	40	4.2	39	77	9	158	25	21	27	24	1.99
65655846--65655943	28	3.5	28	84	4	108	29	16	24	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65657602--65657716	29	4.0	29	71	5	90	26	28	13	30	1.94
65657789--65657825	19	2.0	18	89	5	56	18	40	16	24	1.90
65657798--65657834	19	1.9	19	88	0	56	16	37	18	27	1.92
65665826--65666098	48	5.7	47	75	6	237	30	20	26	23	1.98
65665826--65666098	96	2.8	97	80	3	293	30	20	26	23	1.98
65665826--65666099	144	1.9	144	82	4	347	30	20	25	22	1.98
65672750--65672794	22	2.0	22	95	0	81	22	17	15	44	1.86
65676148--65676272	44	2.7	46	80	9	130	24	28	20	28	1.99
65676148--65676457	94	3.3	95	77	6	238	23	30	19	26	1.98
65678920--65679017	43	2.3	43	89	0	142	37	18	18	25	1.93
65681856--65682062	42	4.9	42	83	4	209	23	14	26	35	1.93
65681864--65682062	85	2.3	85	78	4	213	23	14	26	35	1.94
65684238--65684338	28	3.5	28	86	6	114	29	26	13	29	1.94
65692630--65692794	43	3.9	41	81	6	177	26	18	23	31	1.97
65694184--65694359	46	3.8	47	79	12	211	20	21	29	28	1.98
65694181--65694351	93	1.8	93	93	2	299	20	21	29	28	1.98
65697985--65698018	4	8.5	4	93	0	59	23	2	23	50	1.63
65698219--65698310	32	2.9	32	80	9	116	36	13	15	34	1.86
65699023--65699071	17	2.9	17	87	6	73	48	6	2	42	1.39
65701106--65701175	27	2.6	27	93	2	113	30	28	14	27	1.95
65709041--65709110	27	2.6	27	93	2	113	30	28	14	27	1.95
65715021--65715062	21	2.0	21	90	0	66	54	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65715190--65715231	17	2.8	16	82	17	54	45	7	0	47	1.30
65724884--65724936	26	2.0	27	85	10	74	20	5	1	71	1.16
65726775--65726807	15	2.1	16	88	5	50	69	0	9	21	1.15
65727419--65727465	23	2.0	23	100	0	94	8	21	12	57	1.62
65728268--65728336	32	2.2	30	78	9	75	27	21	13	37	1.90
65731539--65731680	40	3.5	40	83	1	124	27	23	26	22	1.99
65731578--65731706	40	3.2	39	84	6	152	24	22	27	25	2.00
65734712--65734811	29	3.5	29	80	13	109	28	27	15	30	1.96
65742594--65742695	28	3.5	29	81	6	109	28	27	14	29	1.95
65744246--65744343	28	3.4	29	80	6	119	27	31	13	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318