genome.fa.s2.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  180  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55935494--55935556	30	2.1	30	90	0	99	28	14	19	38	1.90
55936788--55936837	21	2.3	23	82	10	68	44	2	30	24	1.65
55940827--55940871	22	2.0	22	83	8	56	37	8	17	35	1.81
55943131--55943298	40	4.2	40	79	3	178	25	22	26	25	2.00
55943131--55943298	80	2.1	80	82	3	196	25	22	26	25	2.00
55948924--55948968	20	2.1	22	84	8	58	31	8	13	46	1.74
55949609--55949706	43	2.2	44	80	8	112	25	18	25	30	1.98
55950508--55950950	227	2.0	227	90	0	697	29	9	23	37	1.87
55963173--55963206	17	2.0	17	100	0	68	35	23	0	41	1.55
55970417--55970504	44	2.0	44	95	0	158	28	26	14	30	1.95
55983136--55983238	40	2.6	40	90	4	165	25	27	23	24	2.00
55984723--55984825	29	3.6	28	80	5	116	29	33	16	21	1.95
55992741--55992843	29	3.6	28	80	5	116	29	33	16	21	1.95
56002974--56003042	19	3.5	20	77	16	63	59	2	1	36	1.21
56002976--56003042	21	3.3	21	79	6	68	59	2	1	35	1.22
56003612--56003653	10	4.2	10	76	11	50	35	0	2	61	1.09
56003587--56003627	19	2.2	19	86	0	55	29	0	2	68	1.03
56003572--56003657	26	3.1	28	82	12	83	30	0	2	67	1.03
56003606--56003665	30	2.0	30	90	9	97	30	0	5	65	1.14
56003615--56003656	20	2.1	20	86	8	59	30	0	2	66	1.04
56008927--56008988	31	1.9	33	84	12	85	35	0	16	48	1.46
56010658--56010769	43	2.7	41	80	8	118	33	22	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56014877--56014930	24	2.2	24	84	12	67	29	38	16	14	1.89
56020589--56020888	47	6.3	47	92	1	449	29	30	8	31	1.87
56020639--56020717	25	3.3	25	66	16	67	31	30	5	32	1.79
56027533--56027586	24	2.2	24	84	12	67	29	38	16	14	1.89
56034148--56034323	46	3.8	46	80	10	214	21	21	28	28	1.99
56034145--56034315	93	1.8	93	93	0	297	21	22	28	27	1.99
56035790--56035841	23	2.2	23	89	3	77	15	26	23	34	1.94
56036292--56036473	46	4.0	46	88	0	229	41	14	22	21	1.89
56040382--56040473	46	2.0	46	85	8	125	28	20	15	35	1.93
56041636--56041750	58	2.0	57	81	5	133	28	8	17	45	1.78
56045928--56045972	20	2.1	22	84	8	58	71	4	6	17	1.25
56050194--56050244	24	2.1	24	92	0	84	52	21	1	23	1.57
56056543--56056639	29	3.4	29	92	5	155	32	27	11	27	1.91
56065096--56065126	2	15.5	2	100	0	62	48	0	0	51	1.00
56069354--56069511	30	5.5	30	87	8	204	28	25	13	31	1.94
56069380--56069511	58	2.2	58	86	5	176	28	25	13	31	1.94
56077314--56077474	30	5.5	30	89	6	231	27	25	13	32	1.94
56077314--56077474	58	2.8	57	88	4	216	27	25	13	32	1.94
56082745--56082789	20	2.2	20	88	0	63	37	11	2	48	1.51
56083371--56083395	12	2.1	12	100	0	50	32	36	0	32	1.58
56086411--56086436	13	2.0	13	100	0	52	61	30	0	7	1.24
56087482--56087589	44	2.5	44	82	10	132	29	30	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56087475--56087602	43	3.0	43	80	11	161	30	30	17	21	1.96
56101224--56101431	40	5.2	39	82	1	200	25	25	21	26	2.00
56101224--56101429	80	2.6	81	82	3	238	25	26	21	26	2.00
56109211--56109418	40	5.2	39	84	1	209	25	25	22	26	2.00
56109211--56109416	80	2.6	81	84	3	247	24	26	22	26	2.00
56112073--56112115	7	5.9	7	89	5	50	44	37	0	18	1.50
56112073--56112115	15	2.9	15	80	10	52	44	37	0	18	1.50
56113411--56113437	10	2.7	10	100	0	54	51	0	18	29	1.46
56119208--56119274	29	2.3	29	75	10	73	37	22	0	40	1.54
56122135--56122342	53	3.9	54	80	6	215	22	24	18	35	1.95
56122149--56122334	55	3.5	52	79	7	185	21	23	19	35	1.96
56122321--56122489	47	3.6	46	90	1	239	26	23	13	36	1.92
56125243--56125399	43	3.7	42	79	5	136	22	17	27	32	1.96
56128220--56128402	39	4.6	39	87	0	240	22	30	22	24	1.99
56135684--56135796	38	2.9	39	86	2	156	23	30	21	23	1.99
56137849--56137909	31	2.0	31	83	3	79	36	13	21	29	1.91
56138410--56138747	50	6.9	50	78	7	352	26	18	29	24	1.98
56138420--56138750	145	2.3	148	83	5	429	26	19	29	24	1.98
56147732--56147770	19	2.0	20	85	5	53	33	12	0	53	1.39
56160197--56160258	6	9.8	6	92	3	79	75	3	4	16	1.10
56162115--56162238	39	3.2	39	91	1	194	21	19	33	25	1.97
56162116--56162269	79	1.9	79	84	2	202	22	21	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56165896--56166080	79	2.3	81	83	7	227	23	27	24	24	2.00
56165889--56166080	40	4.8	39	76	8	163	23	28	23	24	2.00
56173100--56173272	45	3.8	46	80	13	196	21	21	28	28	1.99
56173104--56173277	46	3.8	45	81	12	219	21	21	28	28	1.98
56177761--56177934	45	3.8	45	80	13	212	21	20	28	29	1.98
56177758--56177926	92	1.8	92	93	2	295	21	21	28	28	1.98
56180869--56181044	46	3.8	46	80	12	225	21	21	28	28	1.98
56180866--56181036	93	1.8	93	96	0	315	21	21	29	28	1.98
56189463--56189647	79	2.3	81	83	7	227	23	27	24	24	2.00
56189456--56189647	40	4.8	39	76	8	163	23	28	23	24	2.00
56201346--56201370	13	1.9	13	100	0	50	36	0	24	40	1.55
56202454--56202614	43	3.8	42	77	11	148	24	16	26	32	1.96
56208484--56208551	21	3.2	21	71	8	57	19	19	16	45	1.85
56208486--56208584	42	2.4	42	80	0	117	19	21	17	42	1.89
56208693--56208760	20	3.3	20	68	22	59	38	2	22	36	1.69
56208709--56208774	22	3.1	22	68	24	68	39	3	19	37	1.67
56208693--56208774	42	2.0	42	97	0	155	39	3	20	36	1.71
56210809--56210923	46	2.5	44	83	6	133	26	30	17	26	1.97
56210809--56210969	46	3.5	46	79	7	132	25	31	18	25	1.97
56214340--56214398	29	2.1	27	84	9	75	25	35	11	27	1.91
56214350--56214406	29	2.0	29	100	0	114	21	35	10	33	1.87
56216148--56216214	28	2.3	29	82	7	75	35	2	10	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56219631--56219663	16	2.1	16	94	0	57	60	6	9	24	1.49
56219872--56219931	30	2.0	30	100	0	120	40	10	13	36	1.78
56222498--56222563	25	2.5	26	81	13	73	6	19	0	74	1.03
56224472--56224629	42	3.9	41	77	9	169	31	14	24	29	1.95
56224472--56224629	81	2.0	80	85	1	217	31	14	24	29	1.95
56224800--56224829	15	1.9	16	93	6	53	33	0	26	40	1.57
56230682--56230824	39	3.6	39	93	0	232	25	20	30	22	1.98
56232754--56232957	101	2.0	101	91	0	327	30	25	17	26	1.97
56234436--56234558	49	2.5	50	80	6	135	26	26	18	29	1.98
56234616--56234744	46	2.8	50	76	17	152	22	31	19	27	1.98
56236774--56236933	43	3.7	42	75	8	135	33	23	16	26	1.96
56239571--56239595	13	1.9	13	100	0	50	32	4	24	40	1.73
56247072--56247356	27	10.6	27	87	5	314	27	12	19	39	1.89
56247689--56247729	18	2.3	18	86	0	55	21	19	9	48	1.77
56247998--56248177	87	2.1	86	97	1	342	26	5	17	51	1.67
56249749--56249775	12	2.2	12	100	0	54	14	0	0	85	0.61
56251087--56251239	27	5.7	27	85	3	200	26	10	19	43	1.83
56251087--56251272	54	3.4	54	82	4	205	26	10	18	44	1.82
56251087--56251272	81	2.3	80	85	3	239	26	10	18	44	1.82
56252724--56252807	43	2.0	43	90	0	132	21	20	32	26	1.98
56260629--56260653	2	12.5	2	100	0	50	52	0	0	48	1.00
56263678--56263721	22	2.0	22	90	0	70	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56263678--56263733	22	2.6	22	86	5	62	46	0	0	53	1.00
56263746--56263780	15	2.2	16	90	5	54	60	0	0	40	0.97
56269434--56269504	26	2.8	26	80	2	90	40	22	19	16	1.91
56270552--56270610	29	2.0	30	83	9	77	25	13	1	59	1.44
56270857--56271003	38	3.6	38	77	15	168	29	14	25	30	1.95
56274297--56274360	26	2.4	26	81	5	74	31	23	15	29	1.95
56274464--56274604	27	5.2	27	82	11	182	17	24	23	34	1.96
56274461--56274604	54	2.7	54	93	2	245	17	24	23	34	1.96
56279857--56279963	26	4.2	26	91	2	180	32	7	23	36	1.83
56279857--56279963	51	2.1	52	94	1	189	32	7	23	36	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318