genome.fa.s2.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  144  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44013706--44013869	71	2.3	71	100	0	328	35	17	28	18	1.94
44021271--44021388	41	3.1	41	60	28	98	32	17	28	21	1.96
44021239--44021402	71	2.3	71	100	0	328	35	17	28	18	1.94
44024772--44024901	40	3.2	40	75	6	138	23	28	24	23	2.00
44024788--44024939	40	3.8	39	79	6	146	21	26	24	26	1.99
44024788--44024937	80	1.9	80	83	8	198	21	27	24	26	1.99
44027031--44027090	27	2.3	27	85	2	77	21	23	20	35	1.96
44034359--44034396	2	19.0	2	100	0	76	50	0	0	50	1.00
44034391--44034450	27	2.3	26	82	2	66	23	21	20	35	1.96
44035536--44035605	34	2.1	34	81	5	79	20	2	31	45	1.65
44041933--44042054	43	2.8	44	85	4	142	29	28	15	26	1.96
44041933--44042054	44	2.8	44	82	7	142	29	28	15	26	1.96
44047859--44047928	27	2.5	28	86	2	97	32	25	14	27	1.94
44047936--44048042	42	2.5	42	96	0	196	22	33	14	28	1.94
44055087--44055156	27	2.5	28	86	2	97	32	25	14	27	1.94
44055164--44055270	42	2.5	42	96	0	196	22	33	14	28	1.94
44059217--44059597	47	8.1	47	94	0	629	33	11	29	25	1.91
44059571--44059707	46	3.0	46	90	0	202	34	10	31	24	1.89
44064772--44064960	24	8.0	24	92	4	296	28	21	22	28	1.99
44064793--44064959	23	7.1	23	95	2	280	28	20	22	28	1.99
44064793--44064960	47	3.6	47	93	3	293	28	20	22	28	1.98
44065018--44065074	9	5.9	9	73	15	51	35	21	8	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44065006--44065076	20	3.5	20	94	0	124	32	21	11	35	1.89
44065011--44065065	11	5.4	11	70	16	55	30	20	12	36	1.90
44066399--44066978	27	21.5	27	85	3	704	41	8	22	27	1.83
44068871--44069000	29	4.5	29	86	6	165	28	26	13	31	1.94
44073028--44073090	30	2.1	31	90	3	101	23	23	15	36	1.94
44073301--44073464	23	7.1	23	93	4	253	28	21	21	28	1.98
44073523--44073579	9	5.9	9	73	15	51	35	21	8	35	1.84
44073511--44073581	20	3.5	20	94	0	124	32	21	11	35	1.89
44073516--44073570	11	5.4	11	70	16	55	30	20	12	36	1.90
44074896--44075471	27	21.5	27	86	4	729	40	9	22	27	1.84
44082644--44082689	11	4.5	11	78	13	53	32	19	13	34	1.90
44084667--44084713	20	2.3	20	85	0	58	23	14	21	40	1.90
44084723--44084766	20	2.2	20	100	0	88	31	15	13	38	1.87
44090849--44091073	40	5.7	40	84	7	271	24	21	27	26	1.99
44101763--44101913	54	2.8	54	92	0	248	31	7	21	40	1.80
44101762--44101920	81	2.0	81	87	0	228	32	7	20	39	1.81
44101762--44101913	27	5.6	27	84	0	205	31	7	21	40	1.80
44101771--44101940	81	2.1	81	78	2	189	33	7	20	38	1.81
44101908--44102148	27	8.9	27	85	7	310	40	9	23	27	1.84
44101907--44102156	54	4.6	54	91	0	401	39	8	23	28	1.84
44101906--44102156	81	3.1	81	84	6	364	39	8	23	28	1.84
44105618--44105767	54	2.8	54	92	1	248	31	7	21	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44105617--44105767	27	5.6	27	84	1	205	31	7	21	39	1.80
44105626--44105794	80	2.1	81	78	3	189	33	7	20	37	1.81
44105760--44106010	81	3.1	81	85	4	371	39	8	23	28	1.84
44105762--44106002	27	8.9	27	85	7	310	40	9	23	27	1.84
44105761--44106010	54	4.6	54	91	0	401	39	8	23	28	1.84
44107145--44107398	55	4.8	54	83	7	274	35	17	25	21	1.95
44107151--44107351	108	1.8	110	88	2	307	33	17	25	22	1.96
44116057--44116266	40	5.2	40	87	2	305	25	24	28	21	1.99
44119556--44119614	30	2.0	30	86	0	82	27	25	5	42	1.76
44123543--44123643	28	3.5	28	86	6	114	29	13	26	29	1.94
44127255--44127439	40	4.7	39	77	9	162	27	22	26	23	1.99
44137068--44137189	40	3.1	40	85	4	133	27	28	21	22	1.99
44145064--44145271	40	5.2	40	89	1	294	26	28	21	23	1.99
44151353--44151525	93	1.9	93	89	4	269	29	26	20	23	1.99
44151346--44151524	46	3.9	47	74	10	170	30	26	20	23	1.98
44156984--44157020	2	19.0	2	94	5	67	48	0	0	51	1.00
44157538--44157669	45	2.9	45	94	2	230	22	23	28	25	2.00
44165179--44165310	45	2.9	45	92	2	212	23	22	27	26	2.00
44168220--44168292	29	2.5	29	79	0	83	27	17	31	23	1.97
44170581--44170635	16	3.4	16	92	0	83	50	30	5	12	1.63
44172090--44172197	29	3.8	29	71	6	85	28	12	32	25	1.93
44174532--44174562	16	1.9	16	93	0	53	35	22	0	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44174529--44174568	20	2.0	20	85	0	53	37	22	0	40	1.54
44174776--44175009	55	4.4	52	79	10	226	22	24	17	35	1.95
44175803--44175885	41	2.0	41	97	0	157	38	15	25	20	1.92
44176172--44176241	35	2.0	35	100	0	140	51	11	5	31	1.61
44180714--44180901	40	4.7	40	88	3	281	25	22	26	26	2.00
44180714--44180934	119	1.9	119	82	7	279	26	23	26	24	2.00
44182092--44182143	7	7.3	7	95	4	95	46	40	0	13	1.43
44188635--44188850	55	4.0	54	78	7	215	34	17	26	22	1.95
44188642--44188844	108	1.9	110	83	4	268	32	18	26	23	1.97
44200584--44200757	45	3.8	46	78	13	189	20	21	29	28	1.98
44200589--44200762	46	3.8	46	79	13	214	20	21	29	28	1.98
44203643--44203711	15	4.6	15	83	0	84	11	17	13	57	1.64
44203634--44203721	30	3.0	30	81	8	99	10	17	15	56	1.66
44205674--44205774	28	3.5	28	86	6	114	29	26	13	29	1.94
44209256--44209431	46	3.8	46	80	12	225	21	21	28	28	1.98
44209252--44209423	93	1.8	93	96	0	317	20	21	29	27	1.98
44213150--44213316	40	4.2	40	82	2	185	24	26	22	26	2.00
44221152--44221318	40	4.2	40	82	2	185	24	26	22	26	2.00
44230180--44230281	27	3.7	27	82	2	123	41	18	14	25	1.89
44230178--44230284	55	1.9	55	86	0	151	41	18	14	26	1.88
44230400--44230442	17	2.5	17	100	0	86	13	41	27	16	1.86
44238639--44238823	40	4.6	40	94	1	309	25	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44245931--44246075	40	3.6	40	99	0	281	25	28	23	22	1.99
44250667--44250779	6	18.3	6	67	18	54	47	12	19	20	1.81
44250676--44250779	31	3.5	30	75	17	101	48	11	20	20	1.80
44250688--44250751	25	2.6	25	94	0	110	45	12	23	18	1.84
44250919--44250980	31	2.0	32	87	3	90	35	16	24	24	1.95
44251284--44251784	54	9.5	54	83	6	564	41	7	20	30	1.81
44251582--44251726	43	3.1	43	74	19	119	42	9	19	28	1.83
44251284--44251685	27	14.9	27	87	2	513	41	8	20	29	1.81
44251672--44251703	16	2.0	16	100	0	64	43	12	6	37	1.68
44251591--44251779	97	1.9	97	90	0	297	41	8	19	30	1.81
44251681--44251784	27	3.8	27	84	1	127	42	7	18	31	1.78
44251303--44251765	81	5.9	81	83	8	449	41	8	20	29	1.82
44251636--44251728	43	2.2	43	92	0	150	43	10	16	30	1.82
44251618--44251755	70	2.0	70	92	0	231	41	10	18	30	1.83
44251795--44251884	27	3.3	26	72	15	67	33	8	17	40	1.81
44251875--44251935	26	2.3	26	85	2	77	26	8	24	40	1.83
44251813--44251935	27	4.6	26	72	8	77	29	8	21	39	1.84
44254303--44254506	40	5.1	40	86	4	214	24	27	22	25	2.00
44255709--44255792	40	2.1	40	100	0	168	32	30	11	25	1.92
44262482--44262681	76	2.5	79	81	8	237	24	28	21	26	1.99
44262482--44262681	40	5.1	40	84	8	214	24	28	21	26	1.99
44265279--44265325	6	7.8	6	81	9	60	51	14	17	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44265300--44265403	31	3.2	31	78	15	109	47	8	20	24	1.78
44265311--44265381	19	3.8	19	78	10	83	46	8	21	23	1.78
44265300--44265393	37	2.5	37	89	0	143	46	8	20	24	1.78
44265534--44265592	27	2.2	26	84	3	73	37	22	22	18	1.94
44265636--44265687	27	2.0	26	85	11	70	38	21	23	17	1.93
44265924--44266332	27	15.2	27	87	1	534	40	7	21	29	1.81
44266339--44266478	27	5.2	26	72	12	86	28	9	21	40	1.84
44293668--44293708	20	2.0	20	95	0	73	26	9	12	51	1.70
44296887--44297056	47	3.6	47	83	7	179	23	28	19	28	1.98
44301217--44301380	71	2.3	71	96	0	301	32	17	29	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318