genome.fa.s2.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  157  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48295306--48295477	31	5.5	31	73	10	136	18	18	15	47	1.83
48303843--48304013	43	4.0	42	77	3	153	33	23	15	26	1.95
48305749--48305830	43	1.9	43	82	5	103	14	34	28	23	1.94
48307475--48307728	46	5.5	46	79	6	241	24	29	18	28	1.98
48307474--48307731	94	2.8	93	77	9	271	24	29	18	27	1.98
48307475--48307724	140	1.8	136	82	10	319	24	29	18	28	1.98
48310370--48310396	2	13.5	2	100	0	54	51	0	0	48	1.00
48312512--48312700	39	4.8	40	88	0	186	24	31	21	22	1.98
48312548--48312700	39	3.9	39	91	0	234	24	32	20	22	1.98
48320634--48320786	39	3.9	39	92	0	243	24	32	20	23	1.98
48325233--48325440	44	4.6	44	80	9	222	24	30	18	26	1.98
48332869--48332971	29	3.6	28	80	5	116	29	33	16	21	1.95
48339607--48339760	43	3.6	43	80	6	134	29	26	16	27	1.97
48342648--48342696	20	2.5	20	90	3	73	34	30	4	30	1.76
48346371--48346541	93	1.8	93	86	5	247	31	28	17	22	1.96
48346964--48347023	30	2.0	30	90	0	93	30	25	8	36	1.85
48348193--48348245	8	6.6	8	77	0	61	49	20	22	7	1.74
48356124--48356206	28	2.9	29	78	3	80	26	14	30	28	1.95
48369150--48369453	40	7.6	40	82	6	357	25	23	25	25	2.00
48369150--48369474	80	4.1	80	83	1	393	25	23	25	25	2.00
48369150--48369474	120	2.7	120	94	0	544	25	23	25	25	2.00
48377330--48377669	40	8.6	40	79	7	363	26	22	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48377330--48377669	120	2.8	119	90	4	508	26	22	25	25	2.00
48383462--48383531	27	2.5	28	86	2	97	32	25	14	27	1.94
48383539--48383645	42	2.5	42	96	0	196	22	33	14	28	1.94
48390392--48390461	27	2.5	28	86	2	97	32	25	14	27	1.94
48390469--48390574	41	2.5	42	92	1	178	23	33	13	29	1.93
48392914--48392951	13	2.9	13	92	0	67	26	47	21	5	1.71
48395645--48395796	44	3.5	43	75	7	128	33	25	16	24	1.96
48397410--48397521	30	3.8	30	91	1	163	41	15	24	19	1.90
48398216--48398278	31	2.0	31	90	0	99	23	25	15	34	1.95
48398501--48398560	26	2.4	25	86	5	77	30	20	28	21	1.98
48398488--48398570	25	3.4	24	80	8	78	26	20	22	30	1.98
48398629--48398685	9	5.9	9	73	15	51	35	21	8	35	1.84
48398621--48398687	20	3.3	20	95	0	125	32	19	11	35	1.88
48398621--48398676	11	5.5	11	75	16	66	32	19	12	35	1.89
48406269--48406331	31	2.0	31	84	0	81	25	23	14	36	1.93
48406559--48406620	25	2.5	24	82	10	72	30	22	17	29	1.97
48406679--48406775	9	9.9	9	79	16	104	38	20	6	35	1.78
48406671--48406777	20	5.3	20	95	0	196	36	19	8	35	1.82
48411302--48411426	40	3.2	40	79	3	119	22	24	24	28	1.99
48414473--48414631	30	5.5	30	87	9	213	32	13	25	27	1.94
48414473--48414631	56	2.8	58	87	6	209	32	13	25	27	1.94
48422454--48422610	29	5.5	29	89	5	196	31	14	26	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48422483--48422610	56	2.3	56	89	6	188	32	14	25	27	1.94
48422454--48422610	85	1.8	85	85	5	201	31	14	26	28	1.94
48429753--48429882	40	3.3	39	76	8	136	23	27	23	24	2.00
48429769--48429920	40	3.8	40	78	6	148	22	26	23	27	1.99
48429769--48429918	80	1.9	80	83	8	198	22	26	24	27	1.99
48437759--48437909	40	3.8	40	78	6	146	22	26	23	27	2.00
48437759--48437907	80	1.9	79	83	6	194	22	26	24	26	2.00
48440788--48440894	39	2.7	38	85	9	128	20	29	26	23	1.99
48444014--48444228	47	4.6	47	95	0	369	30	12	31	26	1.92
48444212--48444338	60	2.0	64	92	7	217	33	10	30	25	1.89
48444353--48444379	2	13.5	2	100	0	54	48	0	0	51	1.00
48446640--48447119	40	12.1	40	94	1	822	26	21	25	25	2.00
48450591--48450806	47	4.6	47	95	0	369	30	12	31	26	1.92
48450790--48450921	65	2.0	65	100	0	264	34	10	31	24	1.89
48450809--48450910	32	3.2	32	66	18	93	36	8	29	25	1.86
48450936--48450964	2	14.5	2	100	0	58	48	0	0	51	1.00
48455132--48455372	49	4.9	49	81	3	284	28	26	19	25	1.99
48455141--48455372	100	2.3	98	85	2	320	28	26	18	25	1.98
48455869--48455928	30	2.0	30	87	6	86	28	23	8	40	1.83
48466555--48466812	27	9.6	26	86	5	293	28	20	8	41	1.83
48466538--48466840	54	5.6	54	83	2	198	31	21	8	38	1.83
48466555--48466811	81	3.2	81	89	2	347	28	20	8	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48466583--48466867	134	2.1	135	79	1	304	31	20	8	39	1.82
48466449--48467016	27	21.0	27	77	7	150	35	20	8	35	1.84
48467065--48467165	27	3.7	26	79	10	96	33	22	22	20	1.97
48468413--48468469	9	5.9	9	73	15	51	35	8	21	35	1.84
48468411--48468473	20	3.2	20	95	0	117	36	12	19	31	1.89
48468528--48468694	24	7.0	23	85	6	210	29	21	22	26	1.99
48468528--48468694	47	3.5	47	86	4	212	29	21	22	26	1.99
48468528--48468693	71	2.3	71	88	3	244	28	21	22	27	1.99
48469784--48469891	40	2.7	40	88	0	153	33	25	17	24	1.96
48474221--48474250	15	2.0	15	100	0	60	26	20	13	40	1.89
48477068--48477110	17	2.5	17	96	0	77	32	9	18	39	1.83
48477362--48477469	41	2.7	41	84	8	141	32	26	15	25	1.96
48480647--48480896	67	3.8	64	83	9	265	30	17	29	22	1.97
48480680--48480842	67	2.4	67	95	1	292	33	18	28	19	1.96
48482721--48482882	46	3.5	45	81	9	161	23	32	17	25	1.97
48490251--48490521	48	5.7	47	78	10	232	26	30	16	26	1.97
48490390--48490605	45	4.7	45	79	8	192	24	31	18	25	1.97
48491425--48491586	46	3.5	45	81	9	161	23	32	17	25	1.97
48495547--48495674	47	2.7	47	85	0	157	32	28	14	24	1.94
48499344--48499377	18	1.9	18	88	5	52	29	17	11	41	1.85
48502987--48503303	47	6.7	47	90	2	447	32	7	31	28	1.85
48502987--48503303	96	3.3	93	87	6	447	32	7	31	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48508311--48508545	39	6.0	39	84	6	219	23	22	28	25	2.00
48508538--48508757	43	5.1	43	94	1	370	13	21	32	32	1.92
48512498--48512813	47	6.7	47	90	3	447	32	7	31	29	1.84
48512498--48512813	96	3.3	93	87	6	447	32	7	31	29	1.84
48512498--48512813	145	2.2	142	91	3	496	32	7	31	29	1.84
48514267--48514341	28	2.7	28	85	8	107	26	34	14	24	1.94
48519954--48520222	46	5.8	47	87	4	350	20	24	15	39	1.91
48525490--48525576	28	3.1	28	75	17	81	26	36	11	25	1.90
48525510--48525576	28	2.4	28	89	0	98	28	38	10	22	1.87
48540278--48540450	51	3.4	50	85	4	222	28	29	14	27	1.95
48540278--48540445	52	3.3	52	90	4	238	27	29	14	27	1.95
48544872--48544972	24	4.2	24	96	0	175	32	3	42	20	1.71
48544878--48544971	12	7.8	12	64	13	50	30	4	42	22	1.72
48547708--48548020	49	6.4	49	96	0	554	27	8	34	29	1.87
48548122--48548206	37	2.3	37	95	0	152	24	20	34	21	1.97
48554452--48554609	40	4.0	40	79	4	151	26	24	26	22	2.00
48554452--48554639	80	2.3	80	79	12	206	26	23	27	22	2.00
48557783--48557956	47	3.5	52	81	14	199	25	29	14	29	1.95
48557846--48557956	49	2.2	51	93	4	190	27	29	13	29	1.94
48565749--48566158	48	8.6	47	85	4	387	23	29	18	28	1.97
48568107--48568473	48	7.6	48	82	3	281	25	27	16	31	1.96
48568156--48568476	96	3.3	96	82	3	385	25	27	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48572433--48572459	14	1.9	14	100	0	54	29	3	14	51	1.60
48580087--48580161	28	2.6	28	87	6	98	30	14	25	29	1.95
48580087--48580165	29	2.8	28	77	12	81	30	13	25	30	1.94
48584836--48585002	40	4.2	40	81	5	178	23	28	23	24	2.00
48592885--48593014	40	3.2	40	83	4	165	23	29	25	22	1.99
48598336--48598429	29	3.2	29	98	0	179	29	15	27	26	1.96
48598332--48598466	58	2.3	58	83	6	168	27	15	31	25	1.96
48608178--48608307	40	3.3	39	83	4	163	23	25	28	23	1.99
48609679--48609835	29	5.4	29	80	4	165	27	16	30	25	1.97
48611292--48611365	31	2.4	31	86	0	103	22	20	16	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318