genome.fa.s2.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  101  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30824963--30825123	46	3.5	47	80	14	135	26	19	30	22	1.98
30826662--30826734	29	2.5	29	100	0	146	31	15	28	24	1.95
30826721--30826793	29	2.5	29	84	0	92	28	17	26	27	1.98
30830617--30830791	89	2.0	87	89	4	271	25	28	20	25	1.99
30830630--30830784	44	3.5	44	86	7	226	25	29	20	23	1.99
30835124--30835150	10	2.7	10	100	0	54	25	11	0	62	1.28
30837976--30838260	48	5.9	48	80	0	329	29	17	25	27	1.98
30837976--30838258	96	2.9	96	90	3	453	28	17	26	27	1.98
30850211--30850328	41	3.1	41	60	28	98	32	17	28	21	1.96
30850179--30850342	71	2.3	71	100	0	328	35	17	28	18	1.94
30857790--30857907	41	3.1	41	60	28	98	32	17	28	21	1.96
30857758--30857921	71	2.3	71	100	0	328	35	17	28	18	1.94
30865345--30865409	32	2.0	32	100	0	130	38	24	6	30	1.80
30867364--30867535	93	1.8	93	96	0	317	27	29	21	20	1.98
30867357--30867532	46	3.8	46	79	12	216	28	29	21	20	1.98
30874904--30875074	92	1.9	92	93	0	297	28	29	21	20	1.98
30874897--30875071	46	3.8	46	79	14	198	29	29	20	20	1.97
30878382--30878445	31	2.1	31	90	0	101	23	21	15	39	1.92
30878639--30878733	24	4.0	24	86	6	131	29	22	20	28	1.98
30878660--30878732	23	3.1	23	94	2	119	31	20	19	28	1.97
30878783--30878849	20	3.3	20	89	0	107	32	20	13	32	1.92
30879559--30879622	27	2.4	27	81	5	76	21	25	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30879655--30879833	27	6.7	26	73	8	126	30	7	21	40	1.81
30879869--30880020	27	5.7	27	88	1	234	38	6	25	29	1.81
30879854--30880026	80	2.2	80	90	2	231	38	8	23	30	1.83
30879865--30880034	54	3.2	54	88	1	261	38	7	25	29	1.82
30881937--30881962	13	2.0	13	100	0	52	38	7	30	23	1.83
30888144--30888196	26	2.0	26	96	0	97	49	18	11	20	1.78
30893359--30893424	33	2.0	33	100	0	132	30	42	9	18	1.81
30898736--30898772	6	6.3	6	93	6	67	0	83	0	16	0.64
30898736--30898772	17	2.1	18	95	5	67	0	83	0	16	0.64
30904999--30905084	45	1.9	45	92	4	147	30	13	20	34	1.92
30909880--30909925	23	2.0	23	100	0	92	39	4	8	47	1.54
30912479--30912552	29	2.6	29	95	0	139	27	14	31	27	1.95
30912536--30912611	29	2.6	29	78	0	89	22	19	35	22	1.96
30912479--30912611	58	2.3	58	80	2	133	24	17	33	24	1.96
30920359--30920432	29	2.6	29	95	0	139	27	14	31	27	1.95
30920416--30920491	29	2.6	29	78	0	89	22	19	35	22	1.96
30920359--30920491	58	2.3	58	80	2	133	24	17	33	24	1.96
30926708--30926878	93	1.8	93	96	0	315	27	29	22	20	1.98
30926700--30926880	46	3.9	46	81	9	233	27	29	21	20	1.98
30935032--30935161	40	3.2	40	77	13	142	24	26	24	23	2.00
30935048--30935199	40	3.8	40	80	5	155	22	26	24	26	2.00
30935048--30935199	80	1.9	80	83	5	200	22	26	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30940673--30940880	40	5.2	39	81	3	193	24	25	24	25	2.00
30940673--30940879	80	2.6	80	81	3	229	24	26	24	25	2.00
30948711--30948918	40	5.2	39	81	3	193	24	25	24	25	2.00
30948711--30948917	80	2.6	80	81	3	229	24	26	24	25	2.00
30955119--30955172	16	3.4	16	86	0	81	27	29	7	35	1.84
30955541--30955576	10	3.0	13	76	23	51	36	0	16	47	1.47
30955945--30956007	30	2.1	30	90	0	99	26	4	12	55	1.57
30958134--30958201	31	2.2	31	91	0	118	36	1	7	54	1.37
30962573--30962610	19	2.1	19	85	5	51	31	18	23	26	1.97
30962908--30962990	40	2.1	40	100	0	166	42	10	12	34	1.77
30965360--30965584	44	4.8	46	77	11	210	24	29	18	28	1.98
30969053--30969088	13	2.8	13	91	0	54	38	19	2	38	1.66
30972106--30972149	22	2.0	22	95	0	79	43	29	9	18	1.80
30976296--30976474	50	3.4	50	69	16	146	37	11	29	22	1.89
30976489--30976514	7	3.7	7	100	0	52	38	0	30	30	1.58
30976439--30976571	64	2.1	64	85	2	178	38	10	26	24	1.88
30976496--30976773	58	4.8	58	85	3	301	35	11	28	24	1.90
30977004--30977123	31	3.8	32	86	4	154	42	18	22	16	1.89
30978709--30978746	20	1.9	20	88	0	58	52	5	2	39	1.38
30983223--30983247	13	1.9	13	100	0	50	32	16	16	36	1.90
30984707--30984978	48	5.7	48	95	0	454	33	8	27	30	1.86
30985023--30985108	37	2.3	37	95	0	154	25	19	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30987990--30988111	58	2.1	58	98	0	235	36	22	22	18	1.95
30989081--30989157	38	2.0	38	100	0	154	37	20	5	36	1.75
30992683--30992722	11	3.6	11	82	0	53	60	10	10	20	1.57
30992684--30992745	22	2.8	22	76	7	54	67	6	9	16	1.39
30999287--30999429	62	2.3	62	97	0	268	39	13	10	37	1.79
30999790--30999860	30	2.3	31	80	7	83	50	7	12	29	1.66
31000514--31000562	16	3.1	16	79	5	55	36	10	10	42	1.73
31006361--31006414	24	2.3	22	81	9	63	50	1	0	48	1.11
31006366--31006409	22	2.1	22	87	8	65	47	2	0	50	1.13
31006498--31006574	28	2.7	28	76	8	66	48	3	2	45	1.34
31007220--31007263	22	2.0	22	90	0	70	54	0	0	45	0.99
31007288--31007319	16	1.9	17	93	6	57	62	0	0	37	0.95
31007357--31007408	15	3.2	15	73	19	50	53	3	0	42	1.19
31009972--31010007	8	4.4	8	89	3	54	75	0	2	22	0.94
31014146--31014277	59	2.3	58	84	4	158	25	31	15	27	1.96
31014195--31014277	29	2.9	29	100	0	166	26	28	14	30	1.95
31015440--31015494	19	3.1	17	78	16	58	5	14	1	78	1.02
31027408--31027463	28	2.0	28	100	0	112	35	3	21	39	1.71
31029767--31029850	26	3.3	25	66	21	66	30	23	17	27	1.97
31029768--31029955	51	3.7	49	82	5	205	32	26	16	24	1.96
31044658--31044877	47	4.7	46	76	10	162	29	19	28	23	1.98
31045843--31045937	42	2.3	42	90	0	145	22	17	44	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31052640--31052745	52	2.0	52	100	0	212	37	16	18	26	1.93
31057646--31057677	16	2.0	16	93	0	55	34	18	0	46	1.49
31057878--31058272	151	2.6	151	89	1	612	29	24	18	28	1.98
31057878--31058271	101	3.9	99	79	4	358	29	24	18	27	1.98
31057876--31058272	50	7.9	50	78	3	384	29	23	18	28	1.98
31058885--31058944	30	2.0	30	83	0	75	26	26	6	40	1.81
31061769--31061978	40	5.2	40	88	2	305	21	28	24	25	1.99
31069903--31070112	40	5.2	40	88	2	305	21	28	24	25	1.99
31072687--31072746	15	4.0	15	82	0	66	53	13	18	15	1.73
31072688--31072746	30	2.0	30	82	0	73	52	13	18	15	1.74
31072888--31072927	2	20.0	2	100	0	80	50	0	0	50	1.00
31082593--31082750	33	4.8	33	86	0	199	32	18	10	37	1.86
31086530--31086640	27	4.2	26	85	10	143	36	23	23	16	1.94
31086530--31086640	53	2.1	54	88	5	163	36	23	23	16	1.94
31091836--31091870	10	3.4	10	84	7	52	54	8	8	28	1.60
31092925--31093036	27	4.2	26	85	7	143	37	23	24	15	1.93
31092925--31093036	54	2.1	54	88	3	163	37	23	24	15	1.93
31097037--31097234	71	2.8	70	92	3	294	33	17	28	20	1.95
31097103--31097220	41	3.1	41	60	28	98	32	17	28	21	1.96
31097071--31097234	71	2.3	71	100	0	328	35	17	28	18	1.94
31108480--31108524	23	1.9	24	90	4	74	51	2	37	8	1.46
31115407--31115569	39	4.2	39	91	0	263	22	20	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31115407--31115600	39	4.9	39	89	0	253	22	21	32	23	1.98
31123299--31123460	39	4.2	39	90	2	254	22	20	33	23	1.97
31123316--31123496	40	4.6	40	86	2	154	22	22	33	22	1.98
31127301--31127494	27	7.2	27	89	1	264	28	25	7	38	1.84
31127301--31127494	81	2.4	81	92	1	309	28	25	7	38	1.84
31127497--31127669	27	6.4	27	80	4	188	41	19	8	30	1.81
31127530--31127679	81	1.9	81	88	2	230	43	20	7	29	1.78
31127530--31127735	54	3.8	54	81	3	171	42	18	7	30	1.79
31127619--31127735	27	4.3	27	80	10	112	44	17	6	31	1.75
31127783--31127860	27	2.9	27	75	11	70	37	19	20	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318