genome.fa.s2.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  107  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32697740--32697776	9	4.1	9	92	0	65	45	13	10	29	1.77
32700605--32700687	40	2.1	41	93	4	143	43	16	8	31	1.78
32710458--32710555	28	3.5	28	84	4	108	29	16	24	29	1.96
32718128--32718225	28	3.5	28	84	4	108	29	16	24	29	1.96
32720007--32720116	39	2.8	39	83	8	134	23	22	29	24	1.99
32720007--32720157	39	3.8	39	80	10	132	23	22	28	25	1.99
32728028--32728180	40	3.8	40	78	9	143	22	23	28	25	2.00
32733001--32733133	28	4.8	27	84	8	160	32	22	11	33	1.90
32733001--32733121	56	2.2	56	87	3	181	32	24	12	30	1.92
32736557--32736588	13	2.5	13	95	5	57	40	0	9	50	1.35
32737651--32737722	33	2.2	33	92	0	117	44	2	15	37	1.61
32738996--32739054	30	1.9	31	83	10	77	45	1	3	49	1.28
32745303--32745337	18	1.9	18	88	11	54	34	5	2	57	1.37
32746911--32746968	29	2.0	30	89	3	91	31	1	20	46	1.61
32748226--32748276	25	2.0	25	100	0	102	29	11	19	39	1.87
32752111--32752146	6	5.7	6	87	12	54	69	0	2	27	1.02
32752111--32752146	14	2.8	12	88	12	54	69	0	2	27	1.02
32752102--32752146	20	2.2	21	88	4	65	71	0	2	26	0.98
32752623--32752669	3	15.7	3	100	0	94	31	0	0	68	0.90
32760781--32760910	40	3.3	39	82	4	154	23	29	25	22	1.99
32762973--32763045	28	2.7	27	91	6	112	31	26	13	28	1.94
32762973--32763045	27	2.7	27	95	2	128	31	26	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32769111--32769239	63	2.0	63	100	0	258	38	6	18	36	1.76
32769121--32769225	33	3.3	32	63	18	83	40	4	20	35	1.73
32769588--32769678	23	3.8	23	79	4	92	23	21	16	38	1.93
32769795--32769834	19	2.1	19	100	0	80	37	5	15	42	1.68
32771106--32771133	8	3.5	8	100	0	56	35	0	25	39	1.56
32777079--32777220	39	3.6	39	87	1	187	23	28	23	23	1.99
32779424--32779476	27	2.0	27	92	7	90	15	24	3	56	1.55
32781049--32781102	26	2.1	25	83	10	65	22	11	1	64	1.35
32784698--32785729	516	2.0	516	99	0	2037	34	11	23	30	1.90
32793110--32793297	40	4.7	40	91	1	279	25	29	21	23	1.99
32793090--32793301	80	2.7	79	88	3	318	26	28	21	23	1.99
32800064--32800251	40	4.7	40	91	1	279	25	29	21	23	1.99
32800044--32800255	80	2.7	79	88	3	318	26	28	21	23	1.99
32807024--32807210	40	4.7	40	88	2	261	25	28	21	24	1.99
32807004--32807214	80	2.7	79	86	4	300	27	27	20	24	1.99
32808297--32808340	19	2.2	20	84	12	63	36	6	18	38	1.77
32808303--32808342	19	2.1	19	95	0	71	40	5	12	42	1.64
32812042--32812092	25	2.1	24	85	3	66	70	0	9	19	1.14
32812124--32812153	15	1.9	16	93	6	53	60	3	13	23	1.48
32815735--32816591	48	18.0	48	93	1	1413	35	6	26	31	1.82
32815735--32816591	285	3.0	284	95	2	1520	35	6	26	31	1.82
32816636--32816756	37	3.3	37	89	2	199	24	19	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32817932--32818163	40	5.8	40	96	0	392	25	20	28	26	1.99
32821638--32822457	48	17.1	48	92	0	1325	35	6	26	31	1.81
32823363--32823442	26	3.1	26	94	0	142	36	25	6	32	1.81
32823821--32823896	25	3.0	24	78	14	82	34	22	21	22	1.97
32823790--32823896	50	2.1	50	84	3	135	31	20	21	26	1.98
32836882--32836920	20	2.0	20	85	5	53	33	2	17	46	1.62
32841521--32841546	10	2.6	10	100	0	52	92	0	0	7	0.39
32843540--32843620	40	2.0	40	97	0	153	44	17	9	28	1.80
32845075--32845180	35	3.0	35	100	0	212	37	11	22	28	1.89
32846715--32846760	24	1.9	24	95	0	83	43	26	2	28	1.66
32850391--32850615	79	2.9	80	93	3	386	25	21	27	25	1.99
32850395--32850648	79	3.2	80	90	5	385	25	21	27	24	1.99
32850391--32850615	40	5.7	40	93	3	386	25	21	27	25	1.99
32857590--32857817	40	5.7	40	94	0	404	24	22	27	25	2.00
32860956--32861008	28	1.9	28	84	3	72	30	18	24	26	1.98
32862843--32862935	45	2.0	47	87	6	136	25	12	25	35	1.92
32868969--32869017	25	2.0	25	91	0	80	32	26	12	28	1.92
32872469--32872511	17	2.6	17	81	3	52	41	20	4	32	1.73
32876701--32876780	26	3.0	27	85	3	117	35	15	15	35	1.88
32879181--32879268	42	2.1	42	84	0	113	26	27	21	25	1.99
32879232--32879352	48	2.5	48	82	0	143	27	24	21	26	1.99
32882708--32882878	40	4.3	39	77	10	159	28	21	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32890804--32890953	40	3.8	40	82	5	162	28	22	26	23	1.99
32890800--32890984	40	4.8	38	76	11	155	28	22	26	23	1.99
32898431--32898514	42	2.0	42	80	0	96	27	26	17	28	1.98
32903678--32903797	39	3.1	39	88	0	177	23	18	30	28	1.98
32905792--32905962	44	3.8	44	76	13	186	22	19	28	29	1.98
32906819--32906861	20	2.2	20	82	0	50	51	2	2	44	1.27
32913320--32913492	46	3.7	46	78	14	203	21	18	28	31	1.97
32913317--32913487	93	1.8	93	92	2	290	21	18	29	30	1.97
32915385--32915461	29	2.7	29	93	0	127	28	29	16	24	1.97
32915351--32915461	58	1.9	58	85	1	152	28	28	15	27	1.96
32915672--32917582	961	2.0	961	92	0	3216	30	23	15	30	1.96
32926574--32926771	71	2.8	70	92	3	294	33	17	28	20	1.95
32926640--32926757	41	3.1	41	60	28	98	32	17	28	21	1.96
32926608--32926771	71	2.3	71	100	0	328	35	17	28	18	1.94
32928467--32928637	93	1.8	93	94	2	308	28	29	21	21	1.98
32928459--32928634	46	3.8	46	80	14	218	29	28	20	21	1.98
32936977--32937114	48	2.9	48	83	2	161	28	18	28	24	1.98
32936983--32937418	42	9.7	48	83	5	166	29	15	24	30	1.96
32937083--32937456	42	8.6	42	83	5	408	29	15	24	31	1.95
32939567--32939666	27	3.7	27	93	0	164	26	17	23	34	1.96
32942621--32942735	29	4.0	29	84	6	137	26	16	29	26	1.97
32943990--32944051	31	2.0	31	100	0	124	51	16	3	29	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32957108--32957367	49	5.4	48	93	2	382	30	9	30	28	1.89
32958882--32958982	28	3.5	29	86	6	125	29	27	13	28	1.95
32966857--32966957	28	3.5	29	86	6	125	29	27	13	28	1.95
32974524--32974707	40	4.6	39	75	6	138	26	23	27	22	2.00
32974564--32974752	80	2.4	81	77	4	186	23	24	29	22	1.99
32979851--32979995	40	3.6	40	85	4	193	23	25	24	26	2.00
32987851--32988029	40	4.5	40	81	2	148	23	26	24	25	2.00
32987886--32988029	40	3.6	40	84	4	191	23	25	25	25	2.00
32989802--32989916	27	4.3	26	83	9	126	37	20	22	19	1.94
32989802--32989916	54	2.1	54	85	6	153	37	20	22	19	1.94
32990330--32990359	8	3.8	8	90	0	51	3	23	23	50	1.64
32991808--32991840	3	11.0	3	100	0	66	66	0	0	33	0.92
32993119--32993231	6	18.3	6	67	18	54	47	11	19	21	1.80
32993119--32993231	25	4.6	25	84	3	113	47	11	19	21	1.80
32993826--32994046	27	8.1	27	87	1	271	26	20	17	35	1.95
32993826--32994029	109	1.9	108	86	1	291	25	21	17	35	1.95
32996024--32996154	6	21.3	6	73	16	108	46	14	19	19	1.84
32996033--32996126	37	2.5	37	92	0	152	46	13	21	18	1.83
32996081--32996151	25	2.8	25	89	0	106	43	15	21	19	1.87
32996769--32996988	27	8.1	27	84	4	273	25	20	17	36	1.94
32998310--32998457	43	3.4	43	80	0	179	32	24	14	29	1.94
33001377--33001423	20	2.3	20	96	0	85	42	6	19	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33010711--33010807	40	2.4	40	89	0	140	32	28	19	18	1.96
33012666--33012695	13	2.3	13	100	0	60	46	0	36	16	1.47
33021366--33021434	27	2.5	28	90	2	104	28	28	14	27	1.95
33022773--33022810	20	2.1	18	85	14	51	10	15	0	73	1.09
33029367--33029435	27	2.5	28	90	2	104	28	28	14	27	1.95
33030774--33030811	20	2.1	18	85	14	51	10	15	0	73	1.09
33037368--33037436	27	2.5	28	90	2	104	28	28	14	27	1.95
33045906--33045940	18	2.0	18	88	5	54	25	31	31	11	1.91
33052335--33052538	46	4.5	45	82	11	197	23	30	20	25	1.98
33052378--33052585	46	4.6	44	79	12	181	22	31	19	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318