genome.fa.s2.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  117  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35833939--35834005	27	2.5	27	97	0	125	40	22	16	20	1.91
35834455--35834602	67	2.2	67	89	2	226	20	27	21	30	1.98
35838160--35838339	40	4.6	40	81	2	150	23	26	24	25	2.00
35838195--35838339	40	3.6	40	85	4	193	23	25	24	26	2.00
35846213--35846356	39	3.6	40	84	4	184	23	25	24	26	2.00
35854473--35854546	27	2.7	26	81	8	85	32	20	20	27	1.97
35856040--35856157	39	3.0	39	77	9	116	31	23	21	23	1.98
35856300--35856332	2	16.5	2	93	0	57	51	3	0	45	1.16
35857303--35857333	13	2.4	13	88	0	53	38	16	12	32	1.86
35858277--35858319	22	2.0	22	95	0	77	16	25	23	34	1.95
35863007--35863121	29	4.0	29	84	6	128	27	28	13	29	1.95
35878033--35878240	40	5.2	39	82	3	202	25	25	23	25	2.00
35878033--35878239	80	2.6	80	82	3	238	25	26	23	25	2.00
35886046--35886253	40	5.2	39	82	3	202	25	25	23	25	2.00
35886046--35886252	80	2.6	80	82	3	238	25	26	23	25	2.00
35893334--35893483	67	2.2	66	81	8	169	32	17	29	21	1.96
35893358--35893541	67	2.8	64	78	8	203	29	17	30	22	1.97
35894606--35894634	2	14.5	2	100	0	58	48	0	0	51	1.00
35897753--35897902	67	2.2	66	81	8	169	32	17	29	21	1.96
35897777--35897960	67	2.8	64	78	8	203	29	17	30	22	1.97
35899040--35899066	2	13.5	2	100	0	54	48	0	0	51	1.00
35904347--35904515	46	3.7	46	70	10	139	23	17	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35907459--35907498	15	2.7	15	76	0	53	10	10	17	62	1.53
35910229--35910398	46	3.7	46	75	7	182	22	18	27	31	1.98
35915693--35915741	26	1.9	25	83	4	62	34	22	24	18	1.96
35923460--35923626	40	4.2	40	78	6	160	25	22	27	24	2.00
35926298--35926349	27	2.0	26	84	3	68	34	21	26	17	1.95
35930074--35930250	40	4.5	40	85	4	209	25	29	22	22	1.99
35937790--35937878	27	3.3	27	87	3	99	29	13	15	41	1.85
35937830--35938036	27	7.7	27	87	3	256	31	8	20	39	1.83
35937828--35938036	81	2.6	80	85	3	283	31	9	20	39	1.83
35941230--35941368	27	5.1	27	80	5	115	29	11	18	40	1.86
35941687--35941860	28	6.2	28	84	0	222	27	34	14	24	1.94
35943495--35943587	19	5.1	19	71	21	81	29	9	13	47	1.75
35943469--35943597	54	2.4	54	89	0	195	34	9	14	41	1.78
35947585--35947677	19	5.1	19	71	17	79	31	10	12	45	1.77
35947559--35947687	54	2.4	54	92	0	213	34	10	14	40	1.81
35947838--35947908	24	3.1	23	76	19	76	42	12	14	30	1.82
35947835--35947900	21	3.0	22	80	15	73	42	12	13	31	1.81
35954719--35955279	283	2.0	283	91	0	899	44	14	13	27	1.82
35955288--35955324	17	2.3	17	86	9	51	10	18	0	70	1.16
35962398--35962644	39	6.5	39	79	9	249	33	17	29	19	1.95
35962429--35962494	33	2.0	33	90	0	105	33	16	30	19	1.94
35962525--35962588	19	3.3	19	67	16	51	32	15	34	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35962398--35962647	79	3.3	76	78	6	249	33	17	30	18	1.94
35972400--35972491	28	3.1	27	70	20	78	27	27	18	27	1.98
35972400--35972534	60	2.2	59	80	8	148	25	26	20	27	1.99
35972527--35972572	20	2.3	20	82	14	60	28	23	17	30	1.97
35975074--35975244	93	1.8	93	93	0	297	21	21	29	28	1.98
35975078--35975249	46	3.7	46	77	13	199	21	21	28	28	1.99
35979375--35979475	28	3.5	30	82	6	118	29	14	26	28	1.95
35979404--35979479	29	2.7	28	76	13	75	30	14	26	28	1.95
35987234--35987334	28	3.5	30	82	6	118	29	14	26	28	1.95
35987263--35987338	29	2.7	28	76	13	75	30	14	26	28	1.95
35989388--35989424	12	3.2	12	96	3	67	59	0	24	16	1.37
35991534--35991678	40	3.6	40	85	4	193	23	25	24	26	2.00
35992512--35992694	38	4.7	39	82	3	199	22	28	22	25	1.99
35992512--35992693	76	2.3	79	86	4	253	23	28	23	25	1.99
35992553--35992694	38	3.7	39	86	4	216	22	28	21	26	1.99
36003805--36003907	29	3.6	29	81	2	118	21	16	33	29	1.95
36011827--36011929	29	3.6	29	81	2	118	21	16	33	29	1.95
36016214--36016442	39	5.8	40	90	4	331	23	24	29	23	1.99
36016214--36016442	79	2.9	80	90	3	331	23	24	29	23	1.99
36016253--36016467	79	2.7	79	85	7	287	24	22	27	24	2.00
36024229--36024419	40	4.8	40	90	2	269	23	24	29	23	1.99
36028257--36028316	30	2.0	30	90	0	93	38	6	25	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36028735--36028905	93	1.8	93	89	0	270	23	21	27	27	1.99
36028739--36028910	46	3.7	46	78	10	179	23	21	26	27	1.99
36041028--36041211	40	4.6	39	75	6	138	26	23	27	22	2.00
36041068--36041256	80	2.4	81	77	4	186	23	24	29	22	1.99
36049004--36049187	40	4.6	39	75	6	138	26	23	27	22	2.00
36049044--36049232	80	2.4	81	77	4	186	23	24	29	22	1.99
36051766--36052005	24	10.1	24	91	4	380	36	25	17	20	1.94
36051766--36052005	70	3.4	71	91	4	360	36	25	17	20	1.94
36051766--36052005	94	2.5	95	92	3	387	36	25	17	20	1.94
36059775--36060015	24	10.1	24	95	1	414	36	25	17	20	1.94
36066279--36066340	30	2.1	30	87	0	88	38	6	19	35	1.77
36067152--36067348	55	3.6	54	79	7	204	37	17	22	21	1.94
36077112--36077145	11	3.1	11	95	0	59	64	14	8	11	1.49
36077812--36077863	25	2.1	25	85	0	68	13	11	1	73	1.19
36082039--36082089	15	3.5	15	71	15	52	29	7	7	54	1.57
36083356--36083389	16	2.1	16	89	10	52	73	8	5	11	1.24
36090316--36090623	40	7.6	40	84	4	402	22	23	28	25	1.99
36090320--36090623	123	2.5	120	85	7	400	22	23	29	24	1.99
36090316--36090623	83	3.8	81	91	4	487	22	23	28	25	1.99
36094714--36094843	40	3.2	40	84	4	174	22	24	29	23	1.99
36096638--36096815	40	4.5	40	90	6	256	25	28	23	23	2.00
36098801--36098845	22	2.0	22	87	8	65	35	6	20	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36098804--36098851	22	2.2	22	81	7	53	41	6	18	33	1.76
36098946--36098991	23	2.0	23	100	0	92	39	13	21	26	1.90
36102152--36102215	31	2.1	31	87	0	92	25	25	14	35	1.93
36102406--36102548	24	6.0	24	91	4	209	26	22	22	28	1.99
36102406--36102547	47	3.0	48	90	5	207	26	22	22	28	1.99
36102405--36102548	71	2.0	72	89	4	220	26	22	22	29	1.99
36102598--36102658	20	3.0	20	92	0	104	32	21	11	34	1.89
36102701--36102748	25	1.9	25	91	0	78	25	14	25	35	1.94
36103989--36104386	161	2.5	162	85	2	534	39	8	23	28	1.83
36103989--36104386	27	14.8	27	86	2	496	39	8	23	28	1.83
36104337--36104586	27	9.3	27	82	3	213	32	8	20	38	1.83
36104016--36104458	54	8.3	53	82	3	201	38	8	23	29	1.85
36104381--36104586	80	2.6	81	80	6	206	30	7	21	40	1.81
36104435--36104603	54	3.2	54	86	5	204	32	7	19	40	1.79
36104463--36104603	27	5.3	26	84	2	138	31	7	19	41	1.78
36107387--36107449	31	2.1	31	90	3	101	23	23	15	36	1.94
36107641--36107783	24	6.0	24	91	4	209	26	22	22	28	1.99
36107641--36107782	47	3.0	48	90	5	207	26	22	22	28	1.99
36107640--36107783	71	2.0	72	89	4	220	26	22	22	29	1.99
36107833--36107893	20	3.0	20	92	0	104	32	21	11	34	1.89
36107936--36107983	25	1.9	25	86	0	69	25	16	25	33	1.96
36109216--36109611	80	4.9	80	87	5	498	40	8	23	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36109216--36109611	27	14.8	27	86	2	514	40	8	23	28	1.84
36109535--36109811	27	10.3	27	80	3	211	32	9	20	37	1.84
36109242--36109684	54	8.3	54	82	6	157	38	9	22	29	1.86
36109660--36109829	53	3.2	52	84	8	202	32	7	19	40	1.80
36109689--36109828	26	5.3	26	81	4	129	31	7	19	42	1.78
36112799--36112953	68	2.3	68	93	2	258	23	22	29	24	1.99
36116707--36116747	19	2.2	19	100	0	82	31	26	9	31	1.89
36120990--36121447	47	9.7	47	95	0	745	32	8	29	29	1.86
36128773--36128945	46	3.7	46	78	13	201	21	20	28	30	1.98
36128770--36128940	93	1.8	93	93	0	297	21	20	29	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318