genome.fa.s2.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  106  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32366823--32366889	18	3.7	18	73	15	66	26	20	11	40	1.88
32366823--32366866	19	2.4	19	88	3	63	27	18	13	40	1.88
32371257--32371477	40	5.6	40	81	4	243	28	25	21	25	1.99
32378633--32378809	40	4.5	40	83	4	180	23	25	22	28	1.99
32386650--32386827	40	4.5	40	83	3	180	23	25	22	28	1.99
32390130--32390203	29	2.6	29	95	0	139	27	31	14	27	1.95
32390071--32390203	58	2.3	57	80	5	133	25	33	16	24	1.96
32403441--32403501	24	2.5	24	86	5	79	19	16	29	34	1.94
32413166--32413191	9	2.9	9	100	0	52	19	0	11	69	1.18
32413195--32413271	39	2.0	39	94	0	136	31	12	11	44	1.79
32413550--32413584	13	2.7	13	86	0	52	40	2	8	48	1.49
32418027--32418072	24	2.0	24	95	4	85	43	26	17	13	1.85
32418247--32418306	23	2.5	23	79	15	59	33	20	26	20	1.97
32418718--32418787	17	3.9	17	68	23	54	21	11	0	67	1.22
32419437--32419474	20	2.1	18	85	14	51	34	0	13	52	1.40
32420034--32420163	40	3.2	40	80	2	118	15	29	17	37	1.91
32420051--32420129	20	4.0	20	72	9	72	15	27	18	37	1.91
32420167--32420212	20	2.3	20	80	0	56	10	36	21	30	1.88
32423918--32424008	27	3.4	27	81	3	112	21	20	19	37	1.95
32427700--32427754	28	2.0	28	85	0	74	34	23	16	25	1.95
32428108--32428196	27	3.3	27	77	0	88	24	17	17	39	1.92
32428426--32428460	17	2.0	18	88	5	54	22	37	25	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32430491--32430715	40	5.6	40	83	2	281	23	27	24	25	2.00
32430455--32430715	80	3.3	80	82	3	294	23	26	24	25	2.00
32432679--32432719	20	2.0	20	85	0	55	56	9	26	7	1.58
32448069--32448351	139	2.1	138	97	1	532	29	16	25	28	1.97
32450112--32450185	29	2.6	29	95	0	139	27	14	31	27	1.95
32450169--32450244	29	2.6	29	78	0	89	22	19	35	22	1.96
32450112--32450244	58	2.3	58	80	2	133	24	17	33	24	1.96
32454121--32454199	28	2.8	28	86	0	104	34	11	25	29	1.91
32454415--32454518	40	2.6	39	75	3	100	27	20	28	23	1.99
32468007--32468214	40	5.2	39	81	3	193	24	25	24	25	2.00
32468007--32468213	80	2.6	80	81	3	229	24	26	24	25	2.00
32477940--32478068	46	2.8	46	93	0	213	29	28	21	20	1.98
32477948--32478087	46	3.0	45	87	4	131	28	28	21	21	1.99
32484744--32484952	55	3.9	53	78	6	213	33	16	25	23	1.96
32484751--32484953	108	1.9	110	87	2	302	32	17	25	24	1.97
32485183--32485213	16	1.9	16	93	0	53	41	0	22	35	1.54
32489270--32489295	2	13.0	2	100	0	52	50	0	0	50	1.00
32490001--32490192	40	4.8	40	84	1	215	23	22	28	25	1.99
32490001--32490192	79	2.4	80	83	1	242	23	22	28	25	1.99
32497855--32497962	44	2.4	44	87	3	144	29	23	13	33	1.93
32504782--32504889	44	2.4	44	87	3	144	29	23	13	33	1.93
32507102--32507294	40	4.8	40	83	0	206	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32512820--32513034	55	4.0	54	78	7	231	34	15	26	22	1.94
32512827--32513028	108	1.9	109	85	5	284	33	16	26	23	1.96
32513266--32513296	16	1.9	16	93	0	53	41	0	22	35	1.54
32514391--32514457	33	2.0	34	88	2	100	29	19	22	28	1.98
32531834--32532342	249	2.0	252	91	4	826	33	23	19	23	1.97
32535078--32535258	55	3.4	54	82	3	204	20	24	18	35	1.95
32537267--32537310	23	1.9	23	100	0	88	50	20	18	11	1.77
32538162--32538205	20	2.2	20	95	0	79	52	13	0	34	1.41
32546602--32546858	40	6.5	40	88	3	342	25	28	22	23	1.99
32546602--32546858	79	3.2	80	87	3	342	25	28	22	23	1.99
32546628--32546858	119	1.9	120	87	2	340	26	29	22	22	1.99
32554775--32554977	40	5.1	40	92	3	313	25	28	24	21	1.99
32560166--32560195	10	3.1	10	95	4	53	50	20	20	10	1.76
32562233--32562442	40	5.2	40	87	2	305	25	24	28	21	1.99
32570368--32570537	40	4.2	40	84	3	225	25	24	28	21	1.99
32575361--32575526	40	4.1	39	79	5	154	27	25	19	26	1.99
32575364--32575523	80	2.0	81	85	3	216	28	25	19	26	1.99
32577254--32577443	50	3.8	50	93	0	299	35	15	24	25	1.94
32577436--32577465	15	2.0	15	93	0	51	20	30	20	30	1.97
32577451--32577526	31	2.5	30	89	2	107	27	21	23	27	1.99
32577482--32577572	45	2.0	46	85	6	123	27	25	20	26	1.99
32577423--32577589	76	2.2	77	91	2	273	27	20	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32586475--32586645	93	1.8	93	96	0	315	28	29	21	21	1.98
32586467--32586642	46	3.8	46	80	12	225	28	28	21	21	1.98
32590925--32591071	43	3.4	43	70	12	140	24	20	25	29	1.99
32590913--32591047	42	3.2	41	70	17	114	23	20	26	29	1.99
32590923--32591118	85	2.3	85	85	5	279	22	20	27	29	1.99
32593982--32594188	53	3.8	53	75	3	198	35	18	25	20	1.95
32597446--32597612	40	4.2	40	82	2	185	24	26	22	26	2.00
32605448--32605614	40	4.2	40	82	2	185	24	26	22	26	2.00
32618435--32618484	25	2.0	25	100	0	100	44	12	16	28	1.83
32618492--32618553	27	2.3	27	97	0	115	29	19	14	37	1.91
32624812--32624984	46	3.8	46	77	9	201	21	20	29	28	1.98
32627896--32627924	15	1.9	15	100	0	58	13	17	13	55	1.70
32630292--32630465	46	3.8	45	78	13	196	21	20	29	29	1.98
32633208--32633243	17	2.1	17	89	5	54	13	25	41	19	1.88
32633459--32633531	27	2.7	27	79	8	85	46	26	4	23	1.70
32633513--32633571	27	2.2	27	90	3	93	40	16	16	25	1.90
32633989--32634078	27	3.3	27	68	9	67	24	18	18	37	1.94
32634056--32634127	31	2.3	31	90	4	110	23	19	23	33	1.97
32641729--32641894	24	7.0	24	87	4	230	27	21	22	29	1.99
32641729--32641895	71	2.3	71	89	3	246	26	20	22	29	1.99
32641729--32641894	47	3.5	48	88	4	230	27	21	22	29	1.99
32641940--32642010	20	3.5	20	92	0	115	33	21	9	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32641940--32642010	9	7.0	11	71	18	64	33	21	9	35	1.86
32642047--32642094	25	2.0	24	87	4	69	25	16	25	33	1.96
32643332--32643644	27	11.6	27	84	6	366	40	9	21	28	1.85
32643333--32643644	81	3.9	82	85	5	413	40	9	21	28	1.85
32646746--32646911	47	3.5	48	88	5	232	26	21	22	29	1.99
32646747--32646911	24	7.0	24	87	6	230	26	21	22	29	1.99
32646968--32647024	9	5.9	9	73	15	51	35	21	8	35	1.84
32646956--32647026	20	3.5	20	94	0	124	32	21	11	35	1.89
32646961--32647015	11	5.4	11	70	16	55	30	20	12	36	1.90
32647063--32647110	25	2.0	24	83	4	60	25	18	25	31	1.98
32648341--32648650	27	11.6	27	84	6	373	40	9	22	28	1.85
32648342--32648649	80	3.9	80	86	5	419	39	9	22	28	1.85
32651754--32651920	24	7.0	24	87	6	232	26	21	22	29	1.99
32651754--32651921	72	2.3	71	91	4	266	26	21	23	29	1.99
32651965--32652013	20	2.5	20	96	0	89	34	22	8	34	1.84
32652053--32652100	25	2.0	24	83	4	60	25	18	25	31	1.98
32653545--32653714	40	4.2	40	85	3	225	21	28	24	25	1.99
32658623--32658801	40	4.4	40	80	3	189	25	21	26	26	2.00
32658623--32658801	80	2.2	81	84	3	227	25	21	26	26	2.00
32658671--32658827	80	2.0	80	80	0	179	27	22	24	24	2.00
32660518--32660544	6	4.5	6	100	0	54	37	0	14	48	1.45
32668974--32669013	20	2.0	20	90	0	62	42	17	12	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32673043--32673286	43	5.8	41	74	11	181	28	26	19	25	1.99
32673043--32673286	85	2.9	85	88	3	341	28	26	19	25	1.99
32677004--32677223	40	5.5	40	92	1	318	23	28	22	25	1.99
32685160--32685367	40	5.2	39	85	4	240	25	27	22	24	2.00
32687121--32687230	40	2.8	39	83	9	125	26	23	25	24	2.00
32692157--32692322	43	3.9	43	80	3	181	30	28	14	26	1.95
32693977--32694015	19	2.1	19	85	9	53	30	25	0	43	1.55
32695143--32695195	26	2.0	26	92	0	88	9	22	35	32	1.86
32697657--32697689	9	3.7	9	91	0	57	24	12	24	39	1.89
32697655--32697689	18	1.9	18	100	0	70	28	11	22	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318