genome.fa.s2.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  150  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46083708--46083778	35	2.0	35	100	0	142	25	8	33	32	1.86
46088939--46089362	24	17.9	24	94	2	732	35	24	19	21	1.96
46091740--46091896	27	5.8	26	88	1	179	29	8	21	39	1.84
46091739--46091896	81	2.0	81	84	2	210	29	8	22	39	1.84
46091739--46091896	54	2.9	54	87	1	210	29	8	22	39	1.84
46099556--46099658	29	3.6	28	80	5	116	29	33	16	21	1.95
46104518--46104643	40	3.2	39	80	6	139	21	25	24	28	1.99
46104457--46104643	80	2.3	80	78	12	204	22	27	24	25	2.00
46110841--46110943	29	3.6	28	80	5	116	29	33	16	21	1.95
46113000--46113045	2	23.0	2	100	0	92	50	0	0	50	1.00
46113045--46113082	2	19.0	2	94	0	67	2	0	47	50	1.15
46113816--46113869	27	2.0	27	92	0	90	27	24	16	31	1.96
46113908--46114063	27	5.8	26	87	4	170	30	8	21	39	1.83
46113907--46114049	53	2.7	54	86	4	182	29	7	23	39	1.82
46113907--46114063	54	2.9	54	87	3	210	29	8	22	39	1.83
46115465--46115634	42	4.0	42	80	0	178	33	26	15	24	1.95
46117013--46117142	46	2.8	49	78	14	148	29	26	20	23	1.99
46117015--46117158	46	3.1	44	75	15	132	29	27	20	22	1.98
46129295--46129391	48	2.0	48	97	0	185	28	23	18	28	1.98
46133000--46133057	16	3.7	15	90	4	80	25	24	5	44	1.74
46135931--46136080	67	2.2	67	81	8	171	32	17	28	21	1.96
46135955--46136138	67	2.8	64	77	8	194	29	17	29	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46140376--46140525	67	2.2	67	81	8	171	32	17	28	21	1.96
46140400--46140583	67	2.8	64	77	8	194	29	17	29	22	1.97
46144806--46144955	67	2.2	67	81	8	171	32	17	28	21	1.96
46144830--46145013	67	2.8	64	77	8	194	29	17	29	22	1.97
46145150--46145202	23	2.3	23	93	3	90	26	11	28	33	1.91
46147060--46147123	21	3.0	22	72	4	58	18	32	31	17	1.94
46155359--46155404	22	2.1	22	91	0	74	43	23	21	10	1.84
46155607--46155671	22	3.0	22	73	13	62	32	21	24	21	1.98
46157553--46157677	40	3.1	41	77	6	114	28	20	25	25	1.99
46166248--46166325	29	2.7	29	81	0	93	21	32	17	28	1.96
46170938--46171351	47	8.7	48	88	4	574	32	7	31	28	1.85
46170938--46171351	142	2.9	143	93	2	690	32	7	31	28	1.85
46172867--46172901	17	2.1	17	100	0	70	31	34	17	17	1.93
46174845--46174978	40	3.4	40	97	1	252	20	20	29	29	1.98
46174845--46175002	79	2.0	80	87	1	228	22	21	27	27	1.99
46186142--46186235	27	3.4	27	82	7	118	15	24	23	36	1.94
46186142--46186248	27	3.9	27	80	9	101	16	23	21	38	1.93
46186142--46186249	54	2.0	53	83	7	137	16	23	21	38	1.92
46193100--46193271	93	1.8	93	96	0	317	27	29	21	20	1.98
46193093--46193268	46	3.8	46	79	12	216	28	29	21	20	1.98
46200675--46200846	93	1.8	93	96	0	317	27	29	21	20	1.98
46200668--46200843	46	3.8	46	79	12	216	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46204361--46204490	40	3.3	39	84	4	172	23	24	28	23	2.00
46205887--46205977	37	2.4	37	88	1	137	24	30	18	26	1.98
46206073--46206384	49	6.4	49	94	1	511	29	33	8	28	1.86
46206279--46206359	27	3.2	27	61	16	64	30	33	4	30	1.79
46212885--46213068	40	4.6	40	78	4	147	22	24	29	23	1.99
46217900--46218001	29	3.5	29	90	0	150	27	15	33	23	1.95
46230190--46230399	40	5.2	40	87	2	305	25	24	28	21	1.99
46238182--46238379	71	2.8	70	92	3	294	33	17	28	20	1.95
46238248--46238365	41	3.1	41	60	28	98	32	17	28	21	1.96
46238216--46238379	71	2.3	71	100	0	328	35	17	28	18	1.94
46245748--46245945	71	2.8	70	92	3	294	33	17	28	20	1.95
46245814--46245931	41	3.1	41	60	28	98	32	17	28	21	1.96
46245782--46245945	71	2.3	71	100	0	328	35	17	28	18	1.94
46250444--46250491	25	1.9	25	95	0	87	45	20	16	16	1.85
46263161--46263192	15	2.0	17	88	11	50	25	9	28	37	1.87
46263509--46263598	42	2.1	42	85	0	117	21	26	28	23	1.99
46266889--46267033	40	3.6	40	87	4	211	24	25	26	23	2.00
46274898--46275042	40	3.6	40	85	4	193	26	25	25	22	2.00
46276768--46276930	39	4.2	39	93	0	263	23	20	31	24	1.98
46276768--46276960	39	4.9	39	90	0	251	23	21	31	23	1.98
46284704--46284866	39	4.2	39	93	0	263	23	20	31	24	1.98
46284704--46284896	39	4.9	39	90	0	251	23	21	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46291281--46291441	39	4.2	39	91	3	245	22	19	32	24	1.98
46291292--46291441	77	1.9	78	91	4	250	23	20	32	24	1.98
46295200--46295289	42	2.1	42	83	0	108	21	25	28	24	1.99
46298188--46298332	40	3.6	40	86	4	202	25	25	26	22	2.00
46306178--46306322	40	3.6	40	86	4	202	25	25	26	22	2.00
46324110--46324196	24	3.6	24	96	0	165	21	17	25	35	1.95
46324110--46324218	48	2.3	48	91	3	175	24	17	23	33	1.96
46324110--46324218	24	4.5	24	90	2	157	24	17	23	33	1.96
46327929--46328126	71	2.8	70	92	3	294	33	17	28	20	1.95
46327995--46328112	41	3.1	41	60	28	98	32	17	28	21	1.96
46327963--46328126	71	2.3	71	100	0	328	35	17	28	18	1.94
46335498--46335695	71	2.8	70	92	3	294	33	17	28	20	1.95
46335564--46335681	41	3.1	41	60	28	98	32	17	28	21	1.96
46335532--46335695	71	2.3	71	100	0	328	35	17	28	18	1.94
46340192--46340239	25	1.9	25	95	0	87	45	20	16	16	1.85
46343299--46343497	71	2.8	70	91	4	287	34	17	28	20	1.95
46343365--46343482	41	3.1	41	60	28	98	32	17	28	21	1.96
46343333--46343497	71	2.3	71	98	1	321	35	17	27	18	1.94
46350867--46351064	71	2.8	70	92	3	294	33	17	28	20	1.95
46350933--46351050	41	3.1	41	60	28	98	32	17	28	21	1.96
46350901--46351064	71	2.3	71	100	0	328	35	17	28	18	1.94
46359606--46359646	20	2.0	20	90	4	64	39	4	17	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46362317--46362502	71	2.7	68	93	5	279	18	28	17	34	1.94
46362340--46362502	71	2.3	71	100	0	326	19	28	17	35	1.94
46369872--46370242	69	5.3	71	93	5	659	19	27	16	35	1.94
46369872--46370241	139	2.7	141	92	6	655	19	27	16	35	1.94
46371632--46371677	20	2.3	20	100	0	92	21	13	8	56	1.63
46378207--46378366	29	5.5	29	82	4	180	25	31	16	26	1.97
46391206--46391255	23	2.0	26	81	11	61	42	4	12	42	1.60
46392637--46392894	41	6.4	40	88	4	317	27	28	21	22	1.99
46392663--46392894	41	5.7	41	92	2	337	28	28	21	21	1.98
46394774--46394886	43	2.7	42	78	8	122	27	18	26	27	1.98
46397097--46397122	13	2.0	13	100	0	52	23	15	23	38	1.92
46397852--46397893	22	1.9	22	95	0	75	50	2	0	47	1.14
46397880--46397936	29	2.0	29	92	0	96	35	3	1	59	1.25
46399189--46399230	21	2.0	21	86	9	59	52	19	0	28	1.46
46407436--46407591	42	3.7	41	73	8	132	30	23	16	28	1.96
46423396--46423465	34	2.1	34	97	0	131	28	24	21	25	1.99
46424939--46425117	40	4.4	40	80	3	180	22	26	24	27	2.00
46431324--46431387	31	2.0	32	93	6	112	43	21	9	25	1.82
46432861--46433039	40	4.4	40	85	2	216	22	26	24	26	2.00
46435313--46435345	7	4.7	7	100	0	66	42	42	15	0	1.46
46437762--46437816	28	1.9	29	82	10	69	52	3	12	30	1.56
46441568--46441675	44	2.5	42	82	7	119	21	19	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46441606--46441695	42	2.1	44	85	8	123	22	16	26	34	1.95
46441615--46441709	42	2.2	42	79	5	111	25	17	26	30	1.98
46446539--46446702	71	2.3	71	96	0	301	18	28	18	34	1.95
46446539--46446736	71	2.8	70	89	3	240	20	28	18	32	1.96
46448901--46449066	40	4.1	40	84	0	188	23	26	22	27	2.00
46456196--46456374	40	4.4	40	82	2	198	22	26	24	26	2.00
46457889--46458052	71	2.3	71	100	0	328	18	28	17	35	1.94
46465128--46465242	42	2.7	42	79	2	133	23	18	26	32	1.97
46465131--46465235	43	2.5	41	76	7	102	24	18	25	31	1.97
46471992--46472019	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318