genome.fa.s2.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  168  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52162514--52162698	79	2.3	82	82	8	238	25	26	21	25	2.00
52175485--52175615	30	4.5	30	86	8	171	32	13	25	28	1.94
52175485--52175615	58	2.2	58	86	4	174	32	13	25	28	1.94
52183265--52183395	30	4.5	30	86	8	171	32	13	25	28	1.94
52183265--52183395	58	2.2	58	86	4	174	32	13	25	28	1.94
52192537--52192574	18	2.1	18	100	0	76	39	13	21	26	1.89
52198286--52198801	260	2.0	259	90	1	811	28	11	25	35	1.90
52204906--52204966	24	2.5	24	100	0	122	19	18	26	36	1.94
52210052--52210123	34	2.1	34	87	7	103	29	20	22	27	1.99
52211866--52212021	57	2.7	56	77	12	165	32	21	16	28	1.95
52215383--52215485	29	3.6	27	81	5	98	29	33	16	21	1.95
52221149--52221403	68	3.9	63	74	13	196	30	16	29	23	1.96
52226783--52226818	2	18.0	2	100	0	72	50	0	0	50	1.00
52229610--52229636	2	13.5	2	100	0	54	48	0	0	51	1.00
52232907--52232939	2	16.5	2	100	0	66	51	0	0	48	1.00
52235937--52235994	27	2.1	27	100	0	116	39	0	34	25	1.56
52249515--52249544	15	2.1	15	93	6	53	66	0	0	33	0.92
52251586--52251621	2	18.5	2	88	5	56	50	0	0	50	1.00
52251621--52251674	2	27.0	2	96	0	99	0	1	48	50	1.11
52251830--52251886	15	3.9	15	86	2	80	36	0	10	52	1.36
52251826--52251884	30	2.0	28	93	6	100	33	0	10	55	1.33
52252260--52252344	21	4.0	21	82	3	89	16	21	24	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52255082--52255257	46	3.8	45	75	10	167	20	19	30	29	1.97
52255078--52255250	93	1.9	93	90	0	274	20	20	30	28	1.98
52260999--52261036	2	19.5	2	89	5	60	50	0	0	50	1.00
52261036--52261091	2	28.0	2	100	0	112	0	0	50	50	1.00
52261247--52261303	15	3.9	15	86	2	80	36	0	10	52	1.36
52261243--52261301	30	2.0	28	93	6	100	33	0	10	55	1.33
52261687--52261761	21	3.4	23	76	12	77	14	20	25	40	1.90
52263342--52263382	14	2.9	14	88	0	55	34	9	19	36	1.85
52263418--52263465	14	3.4	14	70	0	51	39	12	10	37	1.77
52263408--52263497	28	3.2	28	79	0	99	36	10	17	35	1.84
52263467--52263525	14	4.2	14	84	0	73	32	8	25	33	1.86
52263360--52263527	28	6.0	28	72	5	97	34	11	19	33	1.89
52265597--52265631	17	2.1	17	94	0	61	11	22	22	42	1.85
52266581--52266621	17	2.5	17	80	15	50	63	0	0	36	0.95
52266582--52266619	16	2.4	16	82	8	51	65	0	0	34	0.93
52269854--52269904	26	2.0	26	84	3	68	64	3	0	31	1.11
52269866--52269914	26	2.0	24	88	8	71	63	6	0	30	1.19
52269901--52269943	21	2.0	22	81	4	52	69	9	2	18	1.26
52274177--52274224	20	2.4	20	75	0	60	20	29	18	31	1.97
52275483--52275591	54	2.0	54	100	0	218	27	32	3	36	1.74
52276830--52276877	6	7.8	6	78	2	51	72	2	22	2	1.05
52276830--52276927	18	5.4	18	70	14	76	66	2	24	7	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52280062--52280279	29	7.5	29	85	3	278	26	29	15	27	1.96
52283328--52283516	29	6.5	29	84	3	229	26	30	15	26	1.96
52285241--52285288	20	2.4	20	71	0	51	20	27	18	33	1.96
52289082--52289131	10	5.0	10	81	13	59	68	2	8	22	1.26
52289795--52289975	95	1.9	97	87	4	269	31	25	13	29	1.94
52290772--52290824	15	3.2	17	82	12	58	77	1	1	18	0.96
52293795--52293828	18	1.9	18	94	5	61	55	5	11	26	1.58
52294537--52294576	20	2.0	20	90	9	64	70	2	7	20	1.24
52294562--52294612	23	2.1	26	82	10	63	56	9	1	31	1.43
52311282--52311329	25	2.0	25	87	4	71	56	14	2	27	1.50
52319398--52319497	44	2.2	45	81	8	107	29	25	21	25	1.99
52319467--52319579	41	2.8	41	87	0	163	28	24	18	28	1.98
52319654--52319930	88	3.1	88	64	12	215	27	25	19	28	1.98
52319596--52320119	177	3.0	177	89	0	780	26	25	18	28	1.98
52319692--52319989	89	3.4	87	67	14	223	27	26	17	28	1.98
52322220--52322294	29	2.6	29	78	4	80	21	36	21	21	1.96
52322278--52322351	29	2.6	29	95	0	139	27	31	14	27	1.95
52330096--52330170	28	2.6	28	78	2	87	21	36	20	22	1.96
52330154--52330227	29	2.6	29	95	0	139	27	31	14	27	1.95
52336742--52336849	44	2.4	44	87	3	144	29	23	13	33	1.93
52342877--52342984	44	2.4	44	87	3	144	29	23	13	33	1.93
52348147--52348186	19	2.1	19	100	0	80	45	22	0	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52349028--52349135	44	2.4	44	87	3	144	29	23	13	33	1.93
52351685--52351835	53	2.8	53	87	4	196	30	27	15	26	1.96
52355733--52355840	44	2.4	44	87	3	144	29	23	13	33	1.93
52361868--52361975	44	2.4	44	87	3	144	29	23	13	33	1.93
52368002--52368109	44	2.4	44	87	3	144	29	23	13	33	1.93
52374139--52374246	44	2.4	44	87	3	144	29	23	13	33	1.93
52385139--52385165	13	2.1	13	100	0	54	29	22	18	29	1.97
52388568--52388627	30	2.0	30	100	0	120	40	16	20	23	1.91
52394143--52394255	41	2.8	41	86	0	163	27	23	19	29	1.98
52394281--52394604	177	1.8	177	85	1	452	27	25	18	28	1.98
52394281--52394563	88	3.2	88	68	8	214	28	25	17	28	1.97
52403006--52403056	24	2.1	24	85	0	66	9	29	15	45	1.79
52408154--52408197	10	4.1	10	78	16	52	75	0	6	18	1.02
52418198--52418297	41	2.4	41	88	0	146	30	22	21	27	1.98
52418372--52418648	88	3.1	88	67	13	217	25	24	20	28	1.99
52418286--52418654	177	2.1	177	88	1	551	26	24	19	28	1.99
52418286--52418699	177	2.3	177	85	1	508	27	24	18	29	1.98
52420433--52420501	34	2.0	34	100	0	138	30	23	17	28	1.97
52420603--52420635	17	1.9	17	88	11	50	12	0	9	78	0.95
52423094--52423152	28	2.1	28	100	0	118	28	10	15	45	1.78
52425277--52425517	49	4.9	49	78	6	261	26	17	26	29	1.98
52425284--52425360	26	3.1	26	62	24	65	27	14	28	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52425279--52425508	101	2.3	98	85	3	300	26	16	26	29	1.97
52431504--52431547	6	6.8	6	80	14	52	13	0	0	86	0.57
52431510--52431541	8	4.2	8	84	15	50	12	0	0	87	0.54
52431504--52431547	14	3.2	14	96	3	81	13	0	0	86	0.57
52433177--52433245	33	2.1	33	100	0	138	57	5	10	26	1.53
52433528--52433587	18	3.3	19	68	17	54	63	6	1	28	1.29
52435664--52436162	205	2.5	200	90	1	782	29	22	17	31	1.97
52439882--52440091	40	5.2	40	88	2	305	21	28	24	25	1.99
52447614--52447643	14	2.1	14	93	0	51	46	10	6	36	1.64
52451456--52451515	18	3.3	19	68	17	54	63	6	1	28	1.29
52451796--52451877	11	6.9	11	74	19	51	63	2	3	30	1.24
52454414--52454590	94	1.9	94	89	0	273	36	14	17	31	1.90
52462214--52462243	15	2.0	15	93	0	51	10	30	13	46	1.75
52462221--52462271	20	2.5	20	77	0	57	9	25	11	52	1.68
52462226--52462280	25	2.2	25	83	6	67	7	21	14	56	1.63
52468239--52468291	21	2.5	20	82	14	63	11	15	5	67	1.38
52471669--52471711	18	2.3	19	84	15	54	23	6	2	67	1.27
52473777--52473860	40	2.1	40	95	0	150	21	2	27	48	1.62
52475389--52475512	22	5.4	21	70	21	63	25	26	12	35	1.92
52475435--52475535	23	4.4	23	70	18	84	25	24	14	34	1.94
52475390--52475539	23	6.5	23	68	15	69	24	26	14	36	1.93
52475389--52475546	69	2.3	69	93	1	262	25	26	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52479160--52479287	66	1.9	65	84	6	168	32	17	30	20	1.95
52482672--52482730	26	2.3	25	85	2	73	23	22	22	32	1.98
52483188--52483233	17	2.6	17	89	3	65	15	15	39	30	1.88
52483392--52483429	2	19.0	2	100	0	76	50	0	0	50	1.00
52487845--52487880	17	2.1	18	89	5	56	47	2	0	50	1.15
52491929--52491970	21	2.0	21	100	0	84	38	14	19	28	1.90
52493449--52493485	16	2.3	16	86	13	58	40	0	0	59	0.97
52505497--52505671	100	1.8	97	79	11	209	34	4	2	58	1.31
52505616--52505663	17	2.9	17	81	12	64	39	2	0	58	1.10
52505607--52505665	24	2.4	25	81	13	70	37	1	0	61	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318