genome.fa.s2.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  18  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4714132--4714357	76	3.0	76	80	9	266	30	17	20	31	1.95
4714336--4714368	14	2.4	14	94	0	57	18	12	6	63	1.48
4714685--4714735	13	3.8	13	80	12	59	74	3	0	21	0.98
4719092--4719161	25	2.8	24	83	10	79	24	30	28	17	1.97
4720799--4720829	2	15.5	2	100	0	62	51	0	0	48	1.00
4723678--4723703	13	2.0	13	100	0	52	23	7	23	46	1.78
4726819--4726870	27	1.9	27	96	0	95	34	9	13	42	1.77
4730710--4730740	5	6.2	5	100	0	62	80	0	19	0	0.71
4735418--4735466	2	24.5	2	100	0	98	48	0	0	51	1.00
4738920--4739765	308	2.7	303	80	8	842	35	14	10	39	1.80
4740793--4740832	21	1.9	21	89	0	62	50	17	12	20	1.78
4742952--4742996	22	2.0	23	91	4	74	26	2	13	57	1.48
4748467--4748572	40	2.7	39	82	5	124	31	24	21	22	1.98
4751583--4751709	63	2.0	63	86	6	177	30	25	24	18	1.98
4754635--4754678	16	2.7	17	89	6	65	52	0	34	13	1.41
4754962--4755009	24	2.0	24	84	4	62	12	29	0	58	1.35
4765114--4765143	3	10.0	3	100	0	60	66	0	0	33	0.92
4766130--4766162	17	1.9	17	88	11	50	69	0	0	30	0.88
4766414--4766508	18	4.7	21	78	12	65	40	16	6	36	1.74
4766450--4766523	19	3.9	19	96	3	141	36	16	10	36	1.83
4766443--4766523	37	2.2	38	91	8	141	35	17	9	37	1.83
4766453--4766532	37	2.2	37	88	6	110	38	13	12	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4766642--4766681	20	2.0	20	85	5	53	10	2	12	75	1.15
4766874--4767064	45	4.3	45	87	1	231	25	27	13	33	1.93
4766874--4767057	89	2.1	90	87	3	264	25	27	14	32	1.94
4767087--4767381	78	3.8	78	89	1	448	25	23	19	31	1.98
4767323--4767910	220	2.7	219	90	1	908	26	21	18	32	1.97
4770582--4770620	21	1.9	20	84	5	51	10	2	15	71	1.23
4770995--4771027	17	1.9	17	93	0	57	36	0	0	63	0.95
4774300--4774372	26	2.8	26	97	0	137	35	4	24	35	1.75
4774360--4774385	13	2.0	13	100	0	52	30	0	38	30	1.58
4774308--4774437	65	2.0	65	96	0	242	33	5	26	34	1.79
4774334--4774411	39	2.0	39	100	0	156	33	5	28	33	1.79
4774369--4774474	26	4.1	26	96	0	185	33	5	25	35	1.80
4776091--4776194	27	3.8	27	82	9	122	20	24	20	35	1.96
4776085--4776199	54	2.1	54	88	3	169	18	23	21	36	1.95
4780645--4780693	3	17.3	3	76	19	52	28	2	0	69	1.00
4780649--4780687	11	3.5	11	92	0	69	28	2	0	69	1.02
4780645--4780686	19	2.2	19	87	8	59	26	2	0	71	0.98
4782830--4783415	46	13.0	46	88	5	824	39	14	23	22	1.90
4783272--4783345	38	1.9	38	86	0	103	40	20	21	17	1.91
4783226--4783390	84	2.0	84	86	4	235	41	16	21	20	1.90
4791437--4791470	3	11.3	3	100	0	68	67	0	0	32	0.91
4791728--4792682	475	2.0	476	95	0	1707	45	15	16	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4793855--4793981	51	2.5	51	88	2	184	27	19	21	31	1.97
4794040--4794597	89	6.3	88	76	7	515	30	22	15	31	1.94
4793718--4794597	133	6.5	133	77	8	668	29	21	16	32	1.95
4793723--4794597	44	19.3	44	74	9	620	29	21	16	32	1.95
4801318--4801375	3	19.3	3	82	7	73	65	1	3	29	1.19
4801523--4801570	18	2.6	19	87	6	64	60	0	8	31	1.26
4804335--4804388	25	2.2	25	90	6	83	12	20	20	46	1.83
4812653--4812696	17	2.6	17	78	7	54	54	13	0	31	1.39
4817043--4817313	46	5.9	46	92	0	425	40	13	22	22	1.89
4817594--4817626	17	2.0	17	94	5	59	48	0	15	36	1.45
4821985--4822029	18	2.5	18	89	7	65	51	2	20	26	1.59
4824084--4824116	11	2.9	12	86	13	52	33	0	0	66	0.92
4824243--4824302	30	2.0	30	86	0	84	55	13	5	26	1.59
4824334--4824376	22	2.0	22	85	0	59	58	11	11	18	1.63
4824341--4824381	11	3.7	11	80	0	55	56	9	14	19	1.66
4824781--4824852	6	12.2	6	69	19	53	45	0	2	51	1.15
4824781--4824845	11	5.5	11	72	16	51	44	0	3	52	1.16
4824782--4824860	17	4.8	17	73	22	71	45	0	3	50	1.19
4824802--4824860	28	2.1	28	96	0	109	45	0	1	52	1.10
4834421--4834463	9	4.8	9	80	11	52	55	2	0	41	1.12
4835234--4835265	11	2.9	11	95	0	55	56	9	9	25	1.61
4835236--4835286	22	2.4	22	81	12	63	60	9	7	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4835391--4835428	2	19.5	2	94	5	69	50	0	0	50	1.00
4836081--4836137	23	2.6	23	78	10	57	31	1	0	66	1.02
4836176--4836215	19	2.1	19	100	0	80	55	5	10	30	1.54
4837293--4837334	20	2.1	20	100	0	84	14	14	16	54	1.71
4841731--4841891	26	6.2	26	95	1	288	37	23	4	34	1.77
4842348--4842385	10	3.8	10	83	13	51	23	7	2	65	1.32
4857602--4857820	33	6.6	33	93	0	357	36	8	21	33	1.84
4858789--4858826	18	2.1	17	86	13	58	73	2	0	23	0.95
4859443--4859901	3	150.7	3	68	14	194	30	5	4	58	1.41
4860810--4860840	9	3.3	9	91	8	53	19	3	0	77	0.90
4869155--4869231	38	2.0	38	100	0	154	25	32	7	33	1.85
4871307--4871335	15	1.9	15	100	0	58	55	3	0	41	1.17
4874001--4874033	12	2.6	13	90	4	50	0	12	21	66	1.23
4880290--4880314	13	1.9	13	100	0	50	32	0	32	36	1.58
4886342--4886377	17	2.1	17	89	0	54	33	0	11	55	1.35
4886347--4886379	13	2.6	13	85	4	50	36	0	9	54	1.32
4886940--4887129	96	2.0	96	90	0	299	41	17	31	10	1.83
4899220--4899352	46	2.9	46	84	3	133	22	19	24	33	1.97
4903723--4903847	55	2.3	54	82	6	144	28	32	23	16	1.95
4907046--4907112	13	5.2	13	88	0	89	17	32	29	19	1.95
4915788--4915869	41	2.0	41	83	4	103	28	17	21	32	1.96
4923871--4923926	18	3.3	18	65	27	50	23	0	26	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4923875--4923938	32	2.0	32	96	0	119	23	0	26	50	1.50
4924687--4924722	2	18.0	2	100	0	72	50	0	0	50	1.00
4926056--4926112	30	1.9	30	89	7	89	14	28	33	24	1.94
4929574--4929602	3	9.7	3	100	0	58	68	0	0	31	0.89
4929890--4929993	52	2.0	52	92	0	172	25	8	54	10	1.63
4934240--4934340	31	3.4	31	87	10	156	52	9	3	33	1.53
4934255--4934340	28	2.9	29	93	5	138	51	10	3	34	1.53
4934748--4934804	30	1.9	30	82	7	71	12	26	35	26	1.92
4948708--4948750	16	2.7	16	83	16	54	81	0	2	16	0.79
4949295--4949332	19	2.0	19	94	0	67	55	10	23	10	1.65
4954614--4954659	17	2.6	17	81	15	58	13	4	4	78	1.05
4954614--4954659	18	2.6	18	86	10	60	13	4	4	78	1.05
4955439--4955471	9	3.7	9	95	0	57	39	12	18	30	1.87
4955439--4955484	9	5.0	9	89	2	56	39	15	15	30	1.88
4955847--4955893	24	2.0	24	91	4	78	27	44	4	23	1.72
4960737--4960774	19	2.0	19	100	0	76	21	26	5	47	1.71
4966282--4966325	18	2.4	18	92	0	70	22	22	20	34	1.97
4969329--4969384	21	2.6	22	82	5	78	35	1	0	62	1.06
4969325--4969385	17	3.6	17	77	14	56	34	1	0	63	1.04
4969425--4969537	18	6.3	18	66	18	58	31	7	1	58	1.37
4969797--4969851	15	3.5	15	76	16	58	34	1	1	61	1.17
4971250--4971285	18	2.0	18	100	0	72	33	5	11	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4981592--4982140	205	2.7	206	92	2	919	31	18	21	28	1.97
4983804--4983919	28	4.0	27	74	22	94	33	3	0	62	1.18
4983809--4983919	21	5.1	22	76	14	99	34	3	0	61	1.20
4983809--4983888	3	25.3	3	72	22	58	35	2	0	62	1.09
4983842--4983919	33	2.4	34	81	16	94	33	5	1	60	1.27
4983807--4983934	58	2.2	58	82	14	147	35	3	0	60	1.21
4983805--4984068	143	1.8	145	80	11	317	32	5	2	59	1.32
4983867--4984068	73	2.7	75	72	18	172	32	5	2	58	1.37
4984287--4984336	16	3.1	16	77	13	50	34	2	2	62	1.18
4987732--4987782	6	8.8	6	85	10	63	74	0	0	25	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318