genome.fa.s2.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  121  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37117430--37117723	54	5.4	54	82	0	293	32	21	7	38	1.82
37117660--37117868	27	7.8	27	80	4	190	41	20	9	29	1.83
37117660--37117828	81	2.1	81	86	2	232	42	19	8	29	1.80
37118111--37118204	25	3.8	25	91	5	145	26	28	20	24	1.99
37118111--37118232	50	2.4	49	81	6	147	27	26	20	25	1.99
37127445--37127586	40	3.5	40	83	1	124	27	23	26	21	1.99
37127484--37127673	40	4.7	39	76	7	148	22	23	29	24	1.99
37127443--37127638	80	2.4	79	80	6	198	24	22	28	23	1.99
37127489--37127673	80	2.3	80	79	3	185	22	24	30	23	1.99
37134244--37134344	28	3.5	30	82	6	118	29	14	26	28	1.95
37134273--37134348	29	2.7	28	76	13	75	30	14	26	28	1.95
37142132--37142232	28	3.5	30	82	6	118	29	14	26	28	1.95
37142161--37142236	29	2.7	28	76	13	75	30	14	26	28	1.95
37153661--37153778	23	5.0	24	89	9	172	27	22	21	28	1.99
37153836--37153912	9	7.9	9	70	16	55	33	20	10	35	1.87
37153832--37153914	20	4.2	20	93	0	148	31	19	13	36	1.90
37153832--37153903	11	7.1	11	67	17	57	30	19	13	36	1.91
37153951--37153998	25	1.9	25	86	0	69	25	16	25	33	1.96
37155159--37155246	27	3.3	27	75	9	81	22	19	19	38	1.93
37155367--37155506	54	2.6	54	84	4	192	32	7	20	39	1.81
37155254--37155560	27	11.3	27	78	5	165	34	9	19	37	1.83
37155350--37155533	81	2.3	80	77	9	192	34	8	19	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37155482--37155749	81	3.3	81	76	7	231	38	8	22	30	1.84
37155483--37155695	27	7.9	27	86	7	229	39	7	23	29	1.83
37155485--37155688	54	3.8	54	84	3	259	40	8	21	29	1.82
37155701--37155790	27	3.3	27	82	3	110	33	10	16	40	1.82
37156854--37157863	506	2.0	506	92	0	1662	31	20	15	32	1.93
37162226--37162409	40	4.6	39	75	6	138	26	23	27	22	2.00
37162266--37162454	80	2.4	81	77	4	186	23	24	29	22	1.99
37170314--37170496	40	4.6	39	75	8	138	26	24	27	22	2.00
37170357--37170505	80	1.9	80	81	2	183	22	24	30	22	1.99
37175210--37175353	39	3.7	40	84	0	175	23	22	29	23	1.99
37183180--37183323	39	3.7	40	84	0	175	23	22	29	23	1.99
37197874--37197908	10	3.4	10	84	7	52	0	14	2	82	0.77
37197874--37197908	11	3.3	11	84	8	54	0	14	2	82	0.77
37208872--37208972	28	3.5	28	86	6	114	28	13	27	29	1.95
37208901--37208972	29	2.5	28	91	6	110	29	13	27	29	1.95
37216927--37217027	28	3.5	28	86	6	114	28	13	27	29	1.95
37216956--37217027	29	2.5	28	91	6	110	29	13	27	29	1.95
37220858--37220898	20	1.9	23	85	14	61	48	17	9	24	1.76
37226583--37226753	93	1.8	93	96	0	315	28	29	21	21	1.98
37226575--37226750	46	3.8	46	80	12	225	28	28	21	21	1.98
37229102--37229190	30	3.0	30	80	8	101	57	15	16	10	1.65
37229102--37229181	15	5.4	15	80	7	92	58	13	17	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37229113--37229190	15	5.2	15	78	9	79	56	15	16	11	1.67
37232127--37232299	46	3.8	46	79	14	214	28	29	21	20	1.98
37232135--37232304	91	1.8	92	94	2	306	27	30	21	20	1.98
37233807--37233838	2	16.0	2	100	0	64	50	0	0	50	1.00
37238510--37238657	18	7.7	18	71	12	89	41	13	10	34	1.78
37238885--37238909	12	2.1	12	100	0	50	40	20	24	16	1.91
37239029--37239062	16	2.1	16	89	10	52	35	8	0	55	1.31
37239311--37239343	2	16.5	2	100	0	66	48	0	0	51	1.00
37239579--37239700	51	2.4	52	86	2	158	27	21	10	40	1.86
37240275--37240338	32	2.0	32	85	8	87	46	7	0	45	1.32
37240321--37240373	20	2.8	18	76	18	54	47	3	0	49	1.19
37240474--37240524	3	18.0	3	78	11	54	62	3	0	33	1.13
37248680--37249108	214	2.0	215	99	0	851	37	10	11	39	1.77
37256395--37256497	29	3.6	29	81	2	118	21	16	33	29	1.95
37264410--37264512	29	3.6	29	81	2	118	21	16	33	29	1.95
37266952--37267002	26	2.0	26	88	7	77	52	5	9	31	1.58
37268377--37268470	40	2.3	40	87	3	136	28	14	25	30	1.95
37271712--37271893	101	1.8	101	85	0	256	26	19	24	29	1.98
37271560--37271935	50	7.5	50	73	3	297	26	17	25	30	1.97
37271559--37271951	151	2.6	151	89	0	588	27	18	24	30	1.98
37274462--37274621	82	2.0	82	85	0	221	40	10	23	26	1.86
37279321--37279380	28	2.1	29	84	3	77	41	3	25	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37279321--37279385	29	2.3	28	83	2	76	43	3	24	29	1.69
37281169--37281201	16	2.0	17	88	5	50	42	0	18	39	1.50
37284066--37284180	43	2.7	43	80	1	133	32	15	23	28	1.95
37288853--37289000	40	3.7	40	88	7	203	24	25	29	20	1.99
37288809--37289032	40	5.6	39	79	5	164	26	24	27	21	1.99
37288853--37289041	80	2.4	78	80	7	193	23	24	29	22	1.99
37296967--37297150	40	4.6	39	75	6	138	26	23	27	22	2.00
37297007--37297195	80	2.4	81	77	4	186	23	24	29	22	1.99
37298820--37298858	20	2.0	19	90	5	60	64	0	5	30	1.15
37298848--37298882	18	1.9	18	88	0	52	48	5	2	42	1.41
37298831--37298923	16	5.6	16	69	14	55	59	2	3	35	1.26
37298890--37298941	27	2.0	26	92	3	86	63	0	0	36	0.95
37300399--37300927	44	11.9	44	73	6	307	26	26	14	31	1.95
37300430--37300999	134	4.3	136	78	6	565	25	26	15	32	1.95
37300445--37301003	267	2.1	268	83	5	693	26	26	15	32	1.95
37303503--37303542	15	2.8	14	85	7	62	25	20	10	45	1.81
37308272--37308381	40	2.8	40	85	0	148	26	23	26	23	2.00
37308272--37308418	40	3.7	39	80	7	127	26	21	27	24	1.99
37320595--37320778	40	4.6	39	75	6	138	26	23	27	22	2.00
37320635--37320823	80	2.4	81	77	4	186	23	24	29	22	1.99
37327354--37327400	20	2.3	20	88	0	67	51	2	10	36	1.49
37331897--37332131	47	4.9	47	91	3	335	28	31	8	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37331947--37332025	25	3.3	25	66	16	67	31	30	5	32	1.79
37331941--37332131	49	4.0	44	89	5	184	29	30	8	31	1.87
37331897--37332131	96	2.5	94	89	4	337	28	31	8	31	1.86
37332112--37332147	16	2.2	16	100	0	72	25	36	11	27	1.90
37332063--37332196	65	2.1	65	98	0	259	29	31	8	30	1.88
37337876--37338046	93	1.8	93	96	0	315	27	29	22	20	1.98
37337868--37338048	46	3.9	46	81	9	233	27	29	21	20	1.98
37340415--37340503	30	3.0	30	80	8	101	57	15	16	10	1.65
37340415--37340494	15	5.4	15	80	7	92	58	13	17	10	1.62
37340426--37340503	15	5.2	15	78	9	79	56	15	16	11	1.67
37343441--37343612	93	1.8	93	96	0	317	27	30	22	20	1.98
37343433--37343608	46	3.8	46	81	10	232	28	29	21	20	1.98
37345976--37346064	30	3.0	30	80	8	101	57	15	16	10	1.65
37345976--37346055	15	5.4	15	80	7	92	58	13	17	10	1.62
37345987--37346064	15	5.2	15	78	9	79	56	15	16	11	1.67
37349009--37349179	93	1.8	93	96	0	315	27	29	22	20	1.98
37349001--37349181	46	3.9	46	81	9	233	27	29	21	20	1.98
37353246--37353342	30	3.2	30	77	2	106	28	15	26	28	1.96
37364364--37364417	25	2.2	25	100	0	108	35	3	24	37	1.73
37375541--37375570	13	2.3	13	100	0	60	46	10	20	23	1.80
37382536--37382599	29	2.1	31	83	11	80	35	0	3	60	1.12
37382577--37382601	8	3.1	8	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37385495--37385534	20	2.0	21	90	5	64	25	0	5	70	1.08
37385734--37385776	18	2.5	17	80	3	50	69	2	0	27	1.00
37385872--37385904	16	2.1	16	88	5	50	30	3	0	66	1.06
37395705--37395729	2	12.5	2	100	0	50	52	0	0	48	1.00
37403844--37403980	67	2.0	67	94	0	238	37	13	24	24	1.91
37410162--37410345	40	4.6	39	75	6	138	26	23	27	22	2.00
37410202--37410390	80	2.4	81	77	4	186	23	24	29	22	1.99
37423463--37423629	40	4.2	40	82	2	185	24	26	22	26	2.00
37431401--37431567	38	4.3	39	79	12	150	25	28	20	26	1.99
37431417--37431561	77	1.9	76	83	7	186	24	28	21	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318