Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  19  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4987734--4987783
19
2.7
18
90
6
82
76
0
0
24
0.80
4987734--4987780
13
3.8
12
86
13
69
74
0
0
25
0.82
4991418--4991466
20
2.5
20
76
6
55
67
2
8
22
1.28
4997014--4997070
30
1.9
30
89
7
89
10
29
36
22
1.88
4997385--4997552
81
2.1
82
84
3
214
35
23
22
17
1.95
4997385--4997552
41
4.1
40
88
3
210
35
23
22
17
1.95
4997778--4997841
7
9.0
7
77
3
56
23
3
26
46
1.67
4997794--4997844
15
3.5
15
81
2
59
21
1
29
47
1.62
4998444--4998528
8
11.0
8
87
7
122
65
1
0
32
1.00
4999747--4999785
17
2.3
17
81
0
51
43
5
23
28
1.75
5001220--5001257
18
2.2
18
85
4
51
26
0
2
71
1.00
5001248--5001295
20
2.4
21
82
10
64
22
2
6
68
1.23
5001359--5001413
27
2.0
27
86
6
76
29
5
3
61
1.35
5001432--5001531
43
2.3
43
94
0
182
23
22
32
23
1.98
5002718--5002757
17
2.3
18
86
4
55
57
0
0
42
0.98
5002725--5002788
18
3.3
18
76
20
58
53
0
1
45
1.10
5002721--5002788
10
6.9
10
71
14
52
51
0
1
47
1.09
5006346--5006383
19
2.0
20
85
15
53
39
23
0
36
1.55
5006610--5006774
46
3.6
45
77
8
170
29
27
19
23
1.98
5006611--5006781
93
1.8
93
89
0
270
29
27
20
22
1.99
5012615--5012736
50
2.4
50
95
0
217
36
17
20
25
1.94
5012724--5012860
31
4.4
31
86
3
204
26
19
25
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5012882--5013007
49
2.6
49
86
3
150
29
15
25
30
1.95
5012882--5013044
42
3.6
47
81
9
169
29
15
25
29
1.96
5012974--5013071
42
2.3
42
89
3
144
31
13
26
28
1.94
5012974--5013087
42
2.7
40
86
5
138
31
14
25
28
1.94
5020545--5020579
17
2.1
17
100
0
70
28
0
20
51
1.47
5021312--5021368
21
2.7
21
100
0
114
36
10
8
43
1.70
5021994--5022182
3
61.3
3
68
20
72
32
3
1
62
1.20
5021996--5022122
43
2.9
43
74
13
118
34
1
1
62
1.14
5022068--5022112
16
2.8
16
83
13
56
40
0
0
60
0.97
5022060--5022119
23
2.6
23
78
5
68
36
0
0
63
0.95
5022324--5022440
19
6.2
19
66
25
61
30
4
2
62
1.28
5022310--5022367
31
1.9
30
85
3
80
27
3
0
68
1.05
5024824--5025326
266
1.9
266
95
1
911
21
17
26
34
1.95
5026570--5026599
14
2.1
14
93
0
51
36
6
10
46
1.64
5034840--5034932
44
2.1
44
91
0
150
33
16
25
24
1.96
5034919--5035427
204
2.5
205
94
0
885
30
19
22
27
1.98
5035328--5035515
87
2.2
87
90
0
286
31
16
22
29
1.96
5037008--5037061
2
27.5
2
92
3
92
46
0
0
53
1.00
5041729--5041761
9
3.7
9
95
0
57
39
12
18
30
1.87
5041729--5041774
9
5.0
9
89
2
56
39
15
15
30
1.88
5042137--5042184
24
2.0
24
95
0
87
27
45
4
22
1.70
5047649--5047873
125
1.8
125
86
5
330
28
8
25
38
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5049141--5049185
23
2.0
23
86
4
65
48
17
4
28
1.66
5049138--5049195
22
2.6
22
84
7
73
44
18
3
32
1.67
5054279--5054323
23
2.0
23
91
4
74
46
17
4
31
1.68
5054305--5054355
19
2.9
17
83
11
66
37
17
7
37
1.79
5054276--5054333
22
2.6
22
86
7
82
43
18
3
34
1.68
5054289--5054346
19
2.8
20
84
10
64
39
17
6
36
1.76
5054707--5054738
6
5.3
6
92
0
55
3
0
43
53
1.16
5055444--5055473
15
2.0
15
100
0
60
66
6
6
20
1.38
5056031--5056068
2
19.0
2
100
0
76
50
0
0
50
1.00
5056127--5056160
15
2.3
15
90
5
52
79
5
11
2
1.02
5056528--5056575
23
2.1
23
96
0
87
29
25
2
43
1.66
5062590--5063311
176
4.1
178
82
5
854
27
25
18
29
1.98
5062957--5063272
88
3.6
86
73
7
260
26
27
17
29
1.97
5063046--5063270
44
5.1
44
65
14
104
27
28
16
27
1.97
5064698--5064918
40
5.6
40
84
6
281
26
28
22
22
1.99
5064697--5064918
80
2.8
80
85
7
310
27
28
22
22
1.99
5068517--5068567
8
6.6
8
82
8
70
13
1
1
82
0.85
5068520--5068573
14
3.8
14
88
11
83
12
1
1
83
0.81
5073388--5073616
112
2.0
112
87
1
325
31
20
27
20
1.97
5076908--5076939
6
5.3
6
92
0
55
81
0
3
15
0.82
5088727--5088897
93
1.8
93
94
0
306
28
28
21
21
1.98
5088722--5088894
46
3.7
46
77
13
201
29
27
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5094181--5094350
93
1.8
93
93
0
295
28
28
20
22
1.99
5094168--5094348
46
3.9
46
79
12
217
29
29
19
21
1.97
5094765--5094824
30
2.0
30
83
6
77
28
25
8
38
1.84
5095118--5095285
47
3.6
47
75
15
202
22
17
29
30
1.97
5095118--5095331
94
2.3
93
93
0
365
21
19
29
29
1.97
5099323--5099499
47
3.8
47
80
13
222
21
19
28
30
1.97
5115991--5116078
28
3.1
29
82
4
101
35
21
23
19
1.96
5116184--5116275
28
3.3
28
95
3
159
30
7
28
33
1.85
5120053--5120087
6
5.8
6
86
0
52
11
5
0
82
0.82
5140293--5140344
25
2.1
25
100
0
104
57
7
7
26
1.54
5143489--5143523
18
1.9
18
100
0
70
22
28
5
42
1.76
5150904--5150979
6
12.3
6
81
5
89
77
3
2
15
1.03
5153130--5153159
11
2.7
11
94
0
51
70
0
0
30
0.88
5155946--5156023
19
4.1
19
86
9
115
38
11
14
35
1.82
5155935--5156021
36
2.4
36
76
16
108
39
11
13
35
1.81
5160620--5160672
9
5.9
9
82
8
54
84
0
9
5
0.76
5160618--5160672
12
4.7
11
75
20
58
85
0
9
5
0.74
5161557--5162030
44
10.8
43
74
10
340
31
17
23
27
1.97
5161553--5161890
174
1.9
175
89
2
527
31
16
23
28
1.97
5161676--5162030
132
2.7
131
93
2
595
32
16
23
27
1.96
5162293--5162355
19
3.4
19
86
8
103
34
14
14
36
1.86
5162541--5162576
16
2.2
16
100
0
72
0
41
11
47
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5165768--5165862
40
2.4
39
77
6
104
36
36
12
13
1.83
5170763--5170890
24
5.4
24
88
7
158
34
19
20
25
1.96
5173794--5173846
25
2.2
24
83
10
63
41
22
20
15
1.89
5180132--5180225
5
18.6
5
83
14
122
21
0
0
78
0.75
5182085--5182118
12
2.9
12
91
4
52
55
0
2
41
1.15
5189926--5189973
12
3.8
12
78
15
53
54
0
2
43
1.12
5190170--5190210
20
2.0
21
90
4
66
60
4
2
31
1.30
5190261--5190315
10
5.4
10
75
12
58
60
1
1
36
1.18
5190279--5190329
18
2.8
18
75
16
52
58
1
1
37
1.20
5191569--5191607
15
2.6
15
87
0
60
20
38
17
23
1.93
5192496--5192534
15
2.6
15
95
0
69
20
17
41
20
1.91
5196722--5196761
21
1.9
21
84
0
53
50
12
5
32
1.62
5198165--5198221
29
1.9
30
89
3
89
17
19
0
63
1.32
5198947--5199005
20
2.9
21
80
14
70
67
5
1
25
1.20
5206916--5206940
13
1.9
13
100
0
50
32
0
20
48
1.50
5210513--5211280
382
2.0
383
85
1
1029
30
22
13
32
1.93
5211529--5211586
30
1.9
30
85
0
80
18
36
31
13
1.90
5219400--5219570
83
2.1
83
97
0
333
31
17
24
26
1.97
5220361--5220427
14
4.9
13
75
12
55
19
2
1
76
1.00
5220357--5220442
5
17.0
5
68
20
54
19
3
2
74
1.07
5220372--5220442
19
3.6
19
77
11
56
21
4
1
73
1.08
5222173--5222234
6
10.5
6
77
8
65
14
3
4
77
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5222164--5222234
12
6.2
11
80
13
65
14
4
4
77
1.07
5222164--5222234
18
4.1
17
79
15
67
14
4
4
77
1.07
5224076--5224154
30
2.7
30
80
3
81
22
35
29
12
1.91
5230882--5230943
22
2.8
22
78
9
54
56
6
6
30
1.50
5231398--5231426
6
4.8
6
100
0
58
17
0
0
82
0.66
5234520--5234559
18
2.2
19
86
13
57
5
37
0
57
1.21
5235751--5235831
38
2.1
38
97
0
153
24
6
32
37
1.80
5240415--5240460
18
2.6
18
82
0
56
28
0
4
67
1.10
5249767--5249801
17
2.1
17
89
10
54
51
0
0
48
1.00
5252147--5252207
18
3.4
18
90
0
95
24
26
8
40
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318