genome.fa.s2.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  138  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42199749--42199912	71	2.3	71	100	0	328	18	28	17	35	1.94
42199749--42199946	71	2.8	70	91	3	258	20	28	17	33	1.95
42207318--42207481	71	2.3	71	100	0	328	18	28	17	35	1.94
42207318--42207515	71	2.8	70	91	3	258	20	28	17	33	1.95
42214635--42214735	28	3.5	28	86	6	114	29	26	13	29	1.94
42214723--42214853	29	4.5	29	87	1	174	25	31	16	27	1.96
42219312--42219410	28	3.5	28	79	6	101	29	27	15	28	1.96
42229446--42229590	40	3.7	40	88	3	215	22	24	28	24	2.00
42238401--42238568	40	4.2	40	80	12	175	23	22	27	26	1.99
42238401--42238568	80	2.1	79	86	4	230	23	22	27	26	1.99
42241844--42241876	16	2.0	17	88	5	50	18	12	36	33	1.88
42245507--42245675	40	4.2	40	84	4	216	21	28	24	25	1.99
42245507--42245675	79	2.1	80	84	3	216	21	28	24	25	1.99
42253597--42253766	40	4.2	40	85	3	225	21	28	24	25	1.99
42258410--42258886	27	17.7	27	78	7	305	38	20	9	31	1.85
42258847--42259202	27	13.3	27	86	2	414	32	20	21	24	1.98
42259610--42259728	6	19.3	6	69	17	75	18	15	15	50	1.78
42259610--42259744	31	4.4	31	82	2	139	18	14	15	51	1.77
42261693--42262173	27	17.8	26	78	9	301	38	20	9	31	1.84
42261673--42262173	54	9.3	53	75	7	338	38	20	9	31	1.84
42261673--42262173	81	6.2	81	76	9	382	38	20	9	31	1.84
42262103--42262513	27	15.3	27	86	2	470	33	18	20	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42262944--42263040	6	15.8	6	72	16	74	19	16	15	48	1.81
42262921--42263056	31	4.4	31	81	3	141	19	14	13	52	1.75
42267721--42267896	46	3.8	46	79	14	200	22	19	28	29	1.98
42267717--42267888	93	1.8	93	92	2	292	22	20	29	28	1.98
42278161--42278330	84	2.0	84	100	0	340	35	15	28	20	1.93
42279384--42279507	47	2.7	47	91	2	189	35	12	27	25	1.91
42279392--42279463	22	3.1	22	64	24	58	33	13	29	23	1.93
42279432--42279610	48	3.8	48	84	9	215	34	8	27	29	1.86
42279478--42279614	48	2.8	49	92	5	224	34	6	28	30	1.83
42279760--42279835	37	2.1	37	94	0	134	21	19	30	28	1.97
42282041--42282170	40	3.2	40	76	4	129	24	23	27	24	2.00
42291951--42291994	22	2.0	22	86	0	61	43	0	4	52	1.22
42298075--42298109	2	17.5	2	100	0	70	51	0	0	48	1.00
42301700--42301892	68	2.8	68	91	3	271	21	28	16	33	1.95
42301737--42301892	68	2.3	68	97	0	294	23	28	15	32	1.95
42301737--42301920	68	2.7	68	90	1	244	21	27	16	33	1.95
42310300--42310411	54	2.1	54	81	0	125	31	23	8	37	1.84
42310325--42310455	27	4.9	27	88	3	192	29	21	8	41	1.82
42310359--42310481	54	2.3	55	82	2	151	33	17	8	39	1.81
42310312--42310496	81	2.3	81	74	3	185	34	21	8	36	1.83
42310447--42310677	27	8.7	26	81	7	241	42	19	8	29	1.80
42310717--42310766	26	1.9	26	88	8	75	36	14	14	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42310810--42310879	26	2.6	27	86	6	90	38	21	22	17	1.93
42310820--42310905	27	3.2	26	85	3	91	34	18	26	19	1.95
42311711--42311808	26	3.8	26	94	1	171	26	23	23	26	2.00
42311954--42312045	42	2.2	42	90	0	139	30	14	20	34	1.92
42312069--42312147	31	2.5	31	93	0	131	31	18	25	24	1.98
42315420--42315482	31	2.0	31	93	0	108	23	23	15	36	1.94
42315674--42315815	24	6.0	24	90	5	200	26	22	21	28	1.99
42315674--42315814	46	3.0	48	88	7	198	26	22	21	28	1.99
42315866--42315925	20	3.0	20	92	0	102	31	21	11	35	1.90
42315968--42316015	25	1.9	25	86	0	69	25	16	25	33	1.96
42323519--42323581	31	2.0	31	93	0	108	23	23	15	36	1.94
42323773--42323915	24	6.0	24	91	4	209	26	22	22	28	1.99
42323773--42323914	47	3.0	48	90	5	207	26	22	22	28	1.99
42323772--42323915	71	2.0	72	89	4	220	26	22	22	29	1.99
42323966--42324025	20	3.0	20	92	0	102	31	21	11	35	1.90
42324068--42324115	25	1.9	25	86	0	69	25	16	25	33	1.96
42330124--42330276	79	1.9	80	82	6	195	26	26	20	25	1.99
42330077--42330280	40	5.1	40	77	8	202	26	26	21	25	2.00
42336335--42336420	42	2.0	42	100	0	172	25	27	8	38	1.84
42345336--42345362	13	2.1	13	100	0	54	55	0	14	29	1.40
42350741--42350847	42	2.5	42	96	0	196	28	14	33	22	1.94
42350855--42350924	27	2.5	28	86	2	97	27	14	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42355369--42355420	27	2.0	26	84	3	68	34	23	25	17	1.96
42362820--42362871	27	2.0	26	84	3	68	34	21	26	17	1.95
42370678--42371399	47	15.4	47	89	1	1063	32	8	31	27	1.87
42370678--42371399	188	3.8	188	94	0	1232	32	8	31	27	1.87
42374706--42374757	27	2.0	26	84	3	68	34	21	26	17	1.95
42377098--42377130	17	2.0	17	88	5	50	27	6	21	45	1.75
42379512--42379730	40	5.4	40	86	4	271	26	23	26	23	2.00
42379512--42379730	120	1.8	121	86	3	316	26	23	26	23	2.00
42379579--42379756	80	2.2	80	81	0	185	27	24	26	21	1.99
42397221--42397395	46	3.8	45	79	11	203	21	20	29	28	1.98
42397217--42397387	92	1.8	93	93	1	299	21	21	30	27	1.98
42400335--42400403	15	4.6	15	83	0	84	11	17	13	57	1.64
42400326--42400412	30	3.0	30	81	9	99	10	17	16	56	1.67
42402785--42402960	46	3.8	45	81	10	212	21	21	29	28	1.98
42402781--42402952	93	1.8	93	94	0	308	20	21	30	27	1.98
42405763--42405811	25	2.0	25	83	0	62	34	24	16	24	1.95
42407414--42407486	35	2.1	35	100	0	146	39	19	5	35	1.75
42409729--42409798	35	2.0	35	100	0	140	51	14	8	25	1.70
42411640--42411789	67	2.2	67	81	8	171	32	17	28	21	1.96
42411664--42411847	67	2.8	64	77	8	194	29	17	29	22	1.97
42412933--42412963	2	15.5	2	100	0	62	48	0	0	51	1.00
42420661--42420709	25	2.0	25	83	0	62	32	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42420833--42420878	25	1.9	24	82	8	58	26	21	23	28	1.99
42426628--42426773	79	1.8	79	82	2	186	24	21	29	23	1.99
42426628--42426732	39	2.7	39	90	1	165	26	20	29	23	1.99
42430090--42430129	17	2.3	18	86	4	55	20	42	25	12	1.86
42433964--42434067	34	3.1	34	98	0	199	28	28	13	28	1.94
42439138--42439292	40	3.9	40	91	0	240	25	30	24	19	1.98
42442712--42442850	40	3.5	40	90	1	208	25	29	23	20	1.99
42444818--42444985	40	4.2	40	85	5	198	26	27	22	23	1.99
42444818--42444985	80	2.1	80	86	4	232	26	27	22	23	1.99
42455448--42455632	79	2.3	81	83	7	227	23	27	24	24	2.00
42455441--42455632	40	4.8	39	76	8	163	23	28	23	24	2.00
42463454--42463592	39	3.5	39	84	5	140	22	28	24	25	2.00
42463455--42463645	40	4.8	40	79	7	194	23	28	23	24	2.00
42463462--42463645	79	2.3	81	83	8	227	23	27	23	24	2.00
42468916--42469026	24	4.6	24	96	0	204	36	25	16	21	1.94
42478442--42478590	80	1.9	80	81	2	183	22	30	24	22	1.99
42478483--42478590	40	2.7	38	85	8	128	21	29	25	23	1.99
42486545--42486693	80	1.9	80	81	2	183	22	30	24	22	1.99
42486586--42486693	40	2.7	38	85	8	128	21	29	25	23	1.99
42492124--42492173	16	3.1	17	77	11	59	10	18	18	54	1.70
42492124--42492173	24	2.1	24	84	0	64	10	18	18	54	1.70
42492129--42492181	24	2.2	24	82	0	61	11	16	16	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42499794--42499827	8	4.2	8	84	0	50	2	20	20	55	1.56
42506910--42507550	326	2.0	321	88	2	953	28	16	24	30	1.96
42507464--42507716	96	2.7	90	79	11	269	27	16	26	29	1.97
42507506--42507678	48	3.6	48	77	3	179	28	17	25	28	1.97
42507485--42507673	96	2.0	96	90	6	303	27	16	26	29	1.97
42521032--42521191	29	5.5	29	82	4	180	25	31	16	26	1.97
42525568--42525661	29	3.2	29	92	0	152	27	14	29	27	1.96
42525564--42525698	58	2.3	58	83	3	166	25	14	33	26	1.95
42533545--42533705	29	5.6	29	82	1	162	24	16	33	26	1.95
42538897--42538937	20	2.0	20	85	4	55	46	4	12	36	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318