genome.fa.s2.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  221  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69552849--69552949	28	3.5	30	82	6	118	29	14	26	28	1.95
69552878--69552953	29	2.7	28	76	13	75	30	14	26	28	1.95
69560501--69560533	16	2.0	17	88	5	50	39	0	24	36	1.56
69560634--69560732	28	3.5	28	84	4	101	29	15	27	28	1.96
69560663--69560732	27	2.5	28	88	2	97	30	15	27	27	1.96
69563373--69563570	39	5.1	39	94	1	335	23	19	31	25	1.98
69563373--69563570	77	2.5	78	94	1	335	23	19	31	25	1.98
69572670--69572742	29	2.5	29	93	0	101	26	31	16	26	1.96
69579127--69579196	28	2.5	28	86	9	90	32	25	14	27	1.94
69583684--69583727	17	2.5	17	96	3	79	47	6	22	22	1.75
69585568--69585657	28	3.2	27	84	7	110	20	25	23	31	1.98
69585568--69585682	55	2.1	56	82	8	137	19	25	21	33	1.97
69586746--69586779	10	3.3	10	84	8	50	29	8	8	52	1.62
69593319--69593708	48	8.0	48	89	5	584	36	5	25	32	1.80
69593319--69593705	150	2.6	149	90	4	597	36	5	25	32	1.80
69593855--69593963	37	2.9	37	91	0	173	22	19	31	27	1.97
69595868--69595900	12	2.6	13	85	9	50	9	45	0	45	1.35
69597110--69597199	27	3.2	28	82	7	103	18	25	24	31	1.98
69597110--69597224	55	2.1	56	80	8	128	18	25	22	33	1.96
69606888--69606985	28	3.5	28	84	4	108	29	16	24	29	1.96
69611056--69611246	39	4.9	39	92	0	310	24	22	31	21	1.98
69624786--69624857	37	2.0	34	81	7	81	6	37	0	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69634168--69634375	40	5.2	40	82	2	229	25	22	26	24	2.00
69645087--69645180	29	3.2	29	93	0	152	25	27	15	30	1.96
69646495--69646533	20	2.1	18	86	13	53	10	15	0	74	1.07
69647381--69647544	27	6.1	27	85	0	157	38	20	9	31	1.84
69647576--69647629	27	2.0	27	88	0	81	37	18	20	24	1.94
69647583--69647655	27	2.7	27	82	4	76	31	21	23	23	1.98
69648388--69648419	2	16.0	2	100	0	64	50	0	0	50	1.00
69650771--69650873	37	2.8	37	93	0	170	25	31	19	24	1.98
69651014--69651695	48	14.0	48	92	2	1103	30	27	6	35	1.81
69651023--69651695	146	4.6	144	92	2	1121	30	27	6	35	1.81
69657140--69657282	27	5.3	27	86	1	198	40	21	8	29	1.83
69657114--69657281	80	2.1	80	88	4	250	41	19	8	30	1.81
69657124--69657278	53	2.9	54	88	1	215	40	20	8	30	1.82
69657260--69657550	27	10.8	27	89	0	402	29	23	7	39	1.81
69657552--69657683	27	4.9	27	82	4	151	35	15	21	27	1.94
69658200--69658337	6	22.3	6	71	21	99	18	18	15	47	1.83
69658200--69658279	25	3.2	25	81	11	94	16	18	16	48	1.81
69658265--69658354	25	3.6	25	81	11	105	18	17	15	47	1.82
69658222--69658304	37	2.2	37	82	4	114	16	19	16	46	1.84
69658200--69658337	62	2.2	62	90	2	224	18	18	15	47	1.83
69658203--69658328	31	4.3	30	73	16	104	17	19	15	46	1.84
69661020--69661089	27	2.5	28	93	2	115	27	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69663612--69663686	27	2.8	27	100	0	150	42	21	6	29	1.78
69663612--69663772	27	6.0	27	82	4	148	39	21	9	29	1.85
69663616--69663823	27	7.7	27	78	3	107	40	22	7	29	1.81
69663807--69663860	27	2.0	27	88	0	81	40	18	16	24	1.90
69663815--69663879	27	2.4	27	86	0	85	32	24	18	24	1.97
69676918--69676953	18	1.9	19	88	5	56	75	0	2	22	0.94
69676928--69676955	12	2.3	12	100	0	56	78	0	0	21	0.75
69681743--69682161	49	8.7	49	93	1	652	32	9	29	28	1.89
69682011--69682086	22	3.3	22	64	10	62	32	10	27	28	1.90
69690945--69691024	42	2.0	42	82	5	101	28	26	17	27	1.98
69690989--69691108	46	2.6	46	76	7	125	25	25	21	28	1.99
69693880--69694083	47	4.3	47	89	0	309	28	28	8	33	1.87
69694057--69694240	48	3.8	48	96	1	323	34	27	6	32	1.82
69693908--69694234	94	3.4	97	85	8	340	30	28	8	32	1.86
69696216--69696262	21	2.2	22	84	3	60	48	12	4	34	1.61
69696202--69696497	159	1.9	159	84	4	393	42	9	6	42	1.62
69696659--69696697	19	2.1	19	85	9	53	76	0	17	5	0.96
69696813--69696846	3	11.0	3	87	6	50	61	2	0	35	1.11
69701901--69702033	55	2.4	55	78	5	135	21	26	24	28	1.99
69706880--69707306	42	10.2	42	85	0	512	36	23	18	21	1.95
69710433--69710613	39	4.6	39	87	2	240	24	22	30	23	1.99
69718500--69718681	39	4.6	39	87	1	240	24	21	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69731430--69731637	40	5.2	39	83	4	179	26	25	21	25	2.00
69731430--69731637	80	2.6	78	82	8	231	26	25	21	25	2.00
69733659--69733824	42	3.8	42	70	9	107	27	24	18	28	1.98
69735262--69735308	21	2.2	22	84	3	60	48	12	4	34	1.61
69735211--69735519	154	2.0	154	83	6	383	42	10	5	42	1.62
69735225--69735557	156	2.2	154	80	6	365	40	10	6	42	1.64
69735248--69735538	156	1.9	154	83	5	372	41	9	5	42	1.61
69735700--69735739	19	2.1	19	86	9	55	77	0	17	5	0.94
69735854--69735887	3	11.0	3	87	6	50	61	2	0	35	1.11
69736343--69736442	43	2.3	43	94	0	182	25	32	22	21	1.98
69736343--69736455	43	2.6	42	92	2	181	24	31	20	23	1.98
69739566--69739750	40	4.6	39	87	6	221	26	27	21	25	1.99
69746789--69746972	40	4.6	39	84	7	194	27	27	20	25	1.99
69746795--69746974	80	2.2	81	80	9	217	26	27	21	25	1.99
69749037--69749244	40	5.2	39	82	3	202	25	25	23	25	2.00
69749037--69749243	80	2.6	80	82	3	238	25	26	23	25	2.00
69758479--69758579	28	3.5	30	82	6	118	29	14	26	28	1.95
69758508--69758583	29	2.7	28	76	13	75	30	14	26	28	1.95
69766333--69766433	28	3.5	30	82	6	118	29	14	26	28	1.95
69766362--69766437	29	2.7	28	76	13	75	30	14	26	28	1.95
69778994--69779070	21	3.7	20	79	5	73	32	18	12	36	1.89
69787802--69787902	28	3.5	28	86	6	114	29	26	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69790408--69790459	25	2.1	25	85	3	70	26	19	21	32	1.97
69790507--69790567	21	2.9	21	85	4	88	32	19	11	36	1.88
69790507--69790567	10	5.9	10	77	11	61	32	19	11	36	1.88
69798215--69798425	39	5.4	39	85	4	275	45	21	2	31	1.65
69798215--69798425	77	2.7	77	84	5	282	45	21	2	31	1.65
69798331--69798395	16	3.6	17	70	29	55	44	23	1	30	1.62
69798215--69798425	116	1.8	116	87	5	318	45	21	2	31	1.65
69801627--69801726	33	3.0	33	76	0	119	20	24	15	41	1.90
69801704--69801748	22	2.0	22	95	0	81	28	26	11	33	1.91
69809838--69810266	47	9.1	47	90	0	660	32	11	29	27	1.92
69809865--69809940	23	3.2	25	62	24	63	28	13	34	23	1.92
69809836--69810257	141	3.0	141	97	0	781	31	11	29	27	1.92
69810147--69810222	23	3.2	25	62	24	63	28	13	34	23	1.92
69809859--69810322	94	4.9	91	85	6	491	32	11	28	27	1.91
69811735--69811842	27	4.0	27	87	0	135	29	15	16	37	1.90
69811836--69812481	54	12.3	53	77	10	562	31	9	19	39	1.84
69811836--69811920	27	3.2	27	83	3	109	28	8	22	41	1.82
69811878--69811958	42	1.9	42	89	0	126	33	9	22	34	1.87
69811852--69811989	69	2.0	68	87	6	199	29	10	23	36	1.87
69811920--69812481	27	21.0	27	84	2	641	31	10	18	39	1.84
69811920--69812482	160	3.5	161	84	3	683	31	10	18	39	1.85
69820252--69820318	27	2.4	27	95	2	116	31	26	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69832083--69832142	31	1.9	31	100	0	120	28	6	21	43	1.78
69835967--69836150	40	4.6	39	75	6	138	26	23	27	22	2.00
69836007--69836195	80	2.4	81	77	4	186	23	24	29	22	1.99
69839895--69839924	6	5.0	6	100	0	60	16	16	0	66	1.25
69841226--69841288	28	2.2	29	88	8	94	31	23	22	22	1.98
69851083--69851136	27	2.0	27	92	0	90	35	14	12	37	1.85
69856169--69856227	28	2.1	28	83	0	73	22	20	33	23	1.97
69856543--69857002	27	17.1	27	82	3	489	38	19	9	31	1.84
69860775--69860875	28	3.5	28	86	6	114	29	26	13	29	1.94
69868694--69868794	28	3.5	28	86	6	114	29	26	13	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318