genome.fa.s2.2.7.7.80.10.50.1000.286.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  286  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90504566--90504628	18	3.7	17	74	19	60	65	1	1	31	1.12
90505463--90505503	22	2.0	20	90	9	64	24	0	4	70	1.06
90505526--90505636	8	12.4	8	71	20	62	31	4	2	61	1.30
90505494--90505566	26	2.7	27	79	14	80	30	1	8	60	1.34
90505579--90505613	17	2.1	17	89	10	54	31	2	0	65	1.07
90514618--90514676	25	2.4	25	83	8	68	44	0	6	49	1.29
90518218--90518301	26	3.2	26	94	0	141	35	25	5	33	1.80
90519955--90520059	27	3.9	27	86	9	135	19	24	21	34	1.96
90524463--90524514	25	2.0	26	85	3	70	25	13	23	38	1.91
90525990--90526097	26	4.2	26	93	0	189	36	24	7	32	1.83
90532758--90532865	26	4.2	26	90	4	173	36	23	7	33	1.83
90533607--90533641	5	7.4	5	93	6	56	42	0	0	57	0.99
90533619--90533709	3	31.7	3	73	16	77	35	0	4	60	1.17
90533946--90534039	33	2.6	37	74	22	92	43	1	4	51	1.28
90534168--90534222	5	10.4	5	78	18	58	74	1	3	20	1.06
90534184--90534233	22	2.4	20	81	12	64	76	4	6	14	1.13
90534270--90534299	12	2.5	12	94	0	51	73	0	26	0	0.84
90534627--90534730	45	2.3	45	80	12	133	21	19	19	40	1.92
90534714--90534748	18	1.9	18	88	0	52	17	25	17	40	1.90
90535946--90535997	25	2.0	26	85	3	70	25	13	23	38	1.91
90537481--90537590	26	4.2	26	97	0	184	36	24	5	33	1.79
90542794--90542853	31	1.9	31	89	0	93	25	20	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90542881--90542972	42	2.2	42	86	3	123	40	21	10	27	1.87
90543112--90543305	47	4.1	47	89	2	309	27	21	22	28	1.99
90543112--90543304	23	8.2	24	90	3	295	27	21	22	28	1.99
90543362--90543418	9	5.9	9	73	15	51	35	21	8	35	1.84
90543350--90543419	20	3.5	20	94	0	122	32	21	11	34	1.89
90543355--90543409	11	5.4	11	70	16	55	30	20	12	36	1.90
90543638--90543805	27	6.2	27	78	6	144	38	22	8	30	1.84
90543638--90543777	54	2.6	54	86	4	201	38	22	8	30	1.84
90543638--90543859	54	4.1	53	77	10	173	39	19	9	31	1.84
90543921--90543985	27	2.4	27	82	5	78	35	18	24	21	1.96
90548772--90548809	19	2.0	19	90	10	60	55	5	2	36	1.37
90557528--90557616	23	3.9	23	73	8	83	39	15	21	23	1.92
90557524--90557662	23	6.0	22	74	9	75	38	17	19	23	1.93
90558789--90558814	6	4.3	6	100	0	52	19	15	15	50	1.79
90558859--90558894	18	1.9	19	94	5	65	36	8	5	50	1.56
90566268--90566430	42	3.9	42	81	2	193	31	11	25	31	1.91
90566268--90566430	85	1.9	83	87	4	238	31	11	25	31	1.91
90575235--90575555	48	6.6	49	78	4	290	27	27	17	28	1.97
90575371--90575555	50	3.8	49	82	5	160	27	26	16	29	1.97
90576766--90576798	11	3.1	11	86	8	50	63	0	27	9	1.24
90578494--90578767	46	6.0	46	93	2	435	37	15	24	22	1.93
90582467--90582499	16	2.1	16	88	5	50	60	9	18	12	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90586874--90587128	55	4.8	54	78	9	251	34	18	25	21	1.96
90587297--90587327	16	1.9	16	93	0	53	41	0	22	35	1.54
90593725--90593758	16	2.1	16	88	0	50	29	14	5	50	1.67
90596470--90596509	3	13.3	3	100	0	80	67	0	0	32	0.91
90597006--90597064	26	2.2	26	79	8	66	52	0	6	40	1.28
90598955--90599006	24	2.2	24	85	0	68	53	9	3	32	1.51
90599829--90599856	7	4.0	7	100	0	56	14	0	0	85	0.59
90603093--90603151	29	2.0	30	83	3	75	50	15	5	28	1.65
90603474--90603527	26	2.1	26	82	6	65	38	7	20	33	1.80
90603712--90603808	33	2.8	35	72	20	89	51	1	2	45	1.19
90603747--90603827	33	2.7	30	76	16	78	50	1	1	46	1.17
90608531--90608587	19	2.9	19	73	19	55	28	5	3	63	1.33
90613187--90613215	12	2.3	13	94	5	51	65	6	27	0	1.18
90614225--90614282	18	3.4	17	77	13	57	27	6	5	60	1.44
90614810--90614861	23	2.3	23	82	0	59	28	7	5	57	1.50
90621597--90621675	3	26.3	3	97	0	149	34	0	1	64	1.02
90625083--90625121	17	2.3	17	95	0	69	58	12	7	20	1.58
90637531--90637568	2	19.0	2	100	0	76	50	0	0	50	1.00
90638809--90638869	21	2.9	21	79	13	63	34	0	18	47	1.49
90639684--90639858	89	2.0	89	91	2	289	18	17	21	41	1.90
90639674--90639858	45	4.2	45	93	2	286	18	18	21	41	1.90
90640034--90640304	18	14.6	18	73	14	167	34	12	16	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90640022--90640304	72	3.8	72	76	12	214	34	12	15	37	1.85
90643817--90644175	46	7.8	46	91	1	479	39	14	24	21	1.91
90643826--90644180	183	1.9	184	87	1	525	39	14	24	21	1.91
90643817--90644198	137	2.8	134	82	5	460	40	14	23	21	1.90
90652263--90652305	20	2.2	20	95	0	77	18	27	32	20	1.96
90652263--90652314	20	2.6	20	90	0	68	17	26	34	21	1.95
90654838--90655016	46	3.9	46	78	11	195	29	27	21	21	1.98
90657406--90657483	15	5.2	15	83	6	88	56	14	16	12	1.68
90657404--90657483	30	2.7	30	84	7	108	56	13	17	12	1.68
90659154--90659271	31	3.5	35	89	9	135	22	23	16	37	1.94
90659177--90659271	31	3.1	31	98	0	181	23	22	15	38	1.92
90659463--90659605	24	6.0	24	90	7	202	25	23	22	28	1.99
90659463--90659604	47	3.0	48	89	7	200	26	23	22	28	1.99
90659462--90659605	71	2.0	72	88	6	213	25	22	22	29	1.99
90659656--90659715	20	3.0	20	90	0	102	33	20	11	35	1.88
90659758--90659805	25	1.9	25	86	0	69	25	16	25	33	1.96
90663447--90663619	93	1.9	93	90	2	276	28	29	20	20	1.98
90663440--90663618	46	3.9	46	78	11	195	29	29	20	20	1.98
90666466--90666512	22	2.3	20	82	13	60	70	8	4	17	1.29
90666543--90666591	26	2.0	25	88	8	73	65	8	6	20	1.41
90667126--90667186	19	3.3	19	93	6	108	37	16	8	37	1.78
90668961--90669074	31	3.7	31	92	2	187	28	25	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90669098--90669189	42	2.2	42	96	0	166	31	20	16	31	1.95
90669337--90669406	25	2.8	25	93	4	115	25	24	25	24	2.00
90670209--90670273	27	2.4	27	79	5	69	23	24	16	35	1.95
90670324--90670520	27	7.2	27	75	6	137	34	9	16	39	1.82
90670391--90670540	81	1.9	81	87	2	221	30	7	20	42	1.79
90670391--90670540	27	5.6	27	81	4	160	30	7	20	42	1.79
90670390--90670573	81	2.3	81	79	7	205	30	9	18	41	1.82
90670572--90670687	27	4.3	27	83	6	146	37	7	26	28	1.84
90670562--90670687	53	2.4	52	82	12	157	36	8	25	29	1.86
90672215--90672248	13	2.7	13	90	4	52	41	20	5	32	1.76
90680797--90680826	12	2.5	12	100	0	60	36	13	26	23	1.92
90682887--90682934	15	3.1	15	77	11	51	64	2	10	22	1.35
90682939--90683193	26	10.6	25	67	20	118	62	0	12	23	1.33
90682927--90683071	77	1.9	75	90	2	227	63	0	13	22	1.34
90683016--90683093	21	3.5	21	68	20	59	60	0	15	24	1.35
90682988--90683193	47	4.4	45	89	7	272	62	0	12	24	1.33
90682937--90683170	27	9.4	27	67	26	135	62	0	12	23	1.33
90683100--90683187	21	4.3	19	74	20	63	65	0	9	25	1.21
90683525--90683565	19	2.2	19	86	4	57	68	0	9	21	1.18
90683530--90683598	30	2.4	30	83	13	83	57	0	13	28	1.36
90683596--90683622	7	3.9	7	100	0	54	29	0	14	55	1.40
90683744--90683791	25	1.9	25	87	8	71	62	0	10	27	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90683778--90683865	11	7.7	11	73	16	63	64	1	14	19	1.35
90683778--90683812	5	6.6	5	87	12	52	60	0	20	20	1.37
90684181--90684219	18	2.2	18	86	4	53	66	2	7	23	1.30
90684212--90684306	5	17.6	5	70	18	50	52	1	16	29	1.51
90684224--90684285	11	5.5	11	74	14	56	53	1	16	29	1.52
90684344--90684383	17	2.4	17	86	0	53	65	5	12	17	1.44
90684405--90684466	5	11.4	5	75	16	52	62	0	22	14	1.31
90684405--90684467	11	5.7	11	70	18	51	63	0	22	14	1.30
90684405--90684466	17	3.8	16	75	12	63	62	0	22	14	1.31
90684420--90684476	28	2.2	24	75	21	62	66	1	19	12	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318