genome.fa.s2.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  104  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31777813--31777882	32	2.3	31	83	11	83	50	5	2	41	1.41
31777737--31777853	62	1.9	59	86	5	162	52	2	3	41	1.31
31784451--31784511	18	3.4	17	73	13	52	32	13	16	37	1.87
31787768--31787836	31	2.2	31	82	5	86	52	8	4	34	1.52
31790910--31790940	14	2.2	14	100	0	62	22	19	0	58	1.40
31801766--31802217	234	1.9	235	92	1	755	29	15	18	36	1.91
31809652--31809689	18	2.2	18	90	9	62	21	5	2	71	1.19
31814424--31814464	3	13.7	3	100	0	82	34	0	0	65	0.93
31817252--31817316	26	2.5	25	80	12	78	40	21	3	35	1.69
31817399--31817764	46	8.0	46	91	0	527	22	22	14	40	1.90
31819879--31819965	28	3.1	28	100	0	174	21	18	10	49	1.77
31824947--31825065	55	2.2	55	83	3	150	26	26	25	21	2.00
31827033--31827209	6	28.8	6	72	15	121	49	11	18	20	1.79
31827033--31827187	25	6.3	24	73	12	86	49	11	18	20	1.78
31827065--31827237	31	5.6	31	71	15	115	47	12	18	21	1.81
31827060--31827187	37	3.5	37	78	6	118	48	11	18	21	1.80
31827060--31827175	25	4.7	25	74	15	107	47	11	19	21	1.80
31827074--31827237	62	2.6	62	89	0	229	46	11	18	22	1.81
31827170--31827238	25	2.8	25	86	0	93	47	13	15	23	1.80
31827355--31827428	27	2.8	27	82	10	89	37	20	22	18	1.94
31827464--31827700	78	3.0	78	91	0	384	31	29	20	18	1.96
31827706--31827817	27	4.1	27	88	5	147	35	21	23	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31828059--31828162	27	3.9	27	89	0	145	26	21	17	34	1.95
31828041--31828153	54	2.1	54	86	0	154	29	19	15	35	1.93
31828059--31828165	54	2.0	54	88	0	160	27	20	17	34	1.95
31834410--31834529	43	2.8	42	85	7	188	29	23	15	31	1.95
31843755--31843849	25	3.8	25	88	2	138	24	21	25	29	1.99
31854808--31855044	117	2.0	119	90	1	370	43	6	10	39	1.65
31854923--31855601	138	5.0	137	81	8	768	44	5	8	41	1.58
31855131--31855341	67	3.1	66	64	19	153	45	5	8	40	1.58
31855093--31855599	261	1.9	263	89	3	790	44	5	7	42	1.55
31855231--31855465	123	1.9	125	88	1	357	42	6	7	43	1.58
31857638--31857690	26	2.0	26	85	7	72	20	16	22	39	1.92
31859835--31859959	45	2.7	46	88	2	189	28	27	22	21	1.99
31860382--31860441	30	2.0	30	90	0	93	30	25	8	36	1.85
31861607--31861711	24	4.3	24	90	1	156	19	39	5	36	1.75
31869231--31869359	40	3.3	38	76	14	127	24	23	27	25	2.00
31877137--31877205	28	2.5	28	95	2	122	18	10	27	43	1.82
31878820--31878857	20	1.9	20	88	0	58	52	10	2	34	1.50
31885103--31885171	28	2.5	28	95	2	122	18	10	27	43	1.82
31888092--31888143	26	2.0	26	81	7	61	44	15	3	36	1.65
31894405--31894434	11	2.7	11	94	0	51	36	33	0	30	1.58
31896262--31896300	18	2.2	18	85	0	51	23	7	20	48	1.75
31897609--31897647	21	1.9	20	89	5	60	20	20	38	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31898000--31898064	11	6.1	11	75	5	62	36	13	16	32	1.89
31898000--31898050	21	2.4	21	90	0	75	37	11	19	31	1.88
31898002--31898062	32	1.9	31	83	3	77	36	11	18	34	1.86
31898096--31898192	25	3.9	25	95	0	176	26	25	21	25	2.00
31898098--31898205	25	4.4	25	89	8	136	28	23	22	25	1.99
31898096--31898217	50	2.4	50	87	5	149	27	24	22	25	2.00
31898411--31898493	31	2.7	31	79	3	89	31	13	24	31	1.93
31899577--31899836	27	9.6	27	85	0	340	40	20	8	31	1.81
31899577--31899837	54	4.8	54	89	1	389	40	19	8	31	1.81
31899577--31899909	54	6.2	54	83	3	368	40	20	8	31	1.82
31899577--31899947	27	13.7	27	80	3	316	39	20	8	31	1.82
31899927--31900367	27	16.3	27	87	2	546	36	19	19	23	1.95
31900347--31900410	27	2.4	27	74	10	67	17	18	26	37	1.93
31902678--31903044	27	13.6	27	82	1	423	39	20	7	31	1.82
31902678--31903045	54	6.8	54	87	3	501	39	20	7	31	1.82
31902678--31903105	81	5.3	81	80	3	425	39	21	8	31	1.83
31902678--31903105	27	15.9	27	77	7	318	39	21	8	31	1.83
31903149--31903668	27	19.3	27	88	0	700	35	19	20	24	1.96
31904099--31904124	6	4.3	6	100	0	52	15	19	15	50	1.79
31911613--31911658	20	2.1	22	84	11	60	17	19	41	21	1.90
31912004--31912060	10	5.6	10	75	8	53	35	10	21	33	1.87
31912010--31912060	21	2.4	21	83	0	66	35	11	21	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31912106--31912177	25	2.9	25	91	0	117	26	25	22	26	2.00
31912108--31912204	25	4.0	24	82	10	83	27	22	22	26	1.99
31912106--31912202	50	1.9	50	81	8	117	27	23	22	25	2.00
31912396--31912478	31	2.7	31	83	3	107	27	18	25	28	1.98
31917993--31918116	39	3.2	39	84	3	142	25	28	20	25	1.99
31918783--31918820	2	19.0	2	88	0	58	52	2	0	44	1.14
31920881--31920907	13	2.1	13	100	0	54	22	40	14	22	1.90
31927845--31927989	40	3.6	40	86	4	202	25	25	26	22	2.00
31935844--31935987	40	3.6	40	85	5	184	26	24	26	22	2.00
31957009--31957280	6	44.8	6	77	14	265	48	13	16	20	1.80
31957009--31957280	85	3.1	85	89	7	420	48	13	16	20	1.80
31957020--31957255	91	2.6	91	93	1	384	48	13	16	20	1.81
31957398--31957463	27	2.5	26	82	7	78	39	22	21	16	1.92
31957416--31957471	27	2.1	27	86	6	78	35	21	25	17	1.95
31957635--31957693	22	2.7	22	81	0	64	32	22	25	20	1.98
31957781--31957863	27	3.1	26	84	5	103	38	21	20	19	1.93
31958061--31958231	54	3.2	54	84	6	220	26	19	16	37	1.93
31958081--31958223	27	5.3	27	81	0	169	25	19	17	37	1.93
31958235--31958939	27	26.2	27	82	4	825	41	10	21	27	1.85
31958240--31958921	54	12.7	54	88	3	914	41	10	21	27	1.85
31958223--31958936	161	4.4	161	92	1	1085	41	10	21	27	1.85
31962386--31962464	37	2.1	37	92	0	131	24	32	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31962596--31962739	48	3.0	48	81	4	139	30	26	9	34	1.87
31962625--31962750	48	2.6	48	85	0	171	30	25	7	35	1.85
31966632--31966776	40	3.6	40	84	4	184	25	25	25	23	2.00
31973439--31973599	43	3.7	43	82	6	175	32	27	16	23	1.96
31973469--31973600	44	3.0	44	81	8	155	32	28	15	23	1.95
31973439--31973599	86	1.9	85	83	8	211	32	27	16	23	1.96
31973796--31973821	13	2.0	13	100	0	52	30	15	0	53	1.42
31977026--31977067	21	2.0	21	95	0	75	19	30	14	35	1.91
31978027--31978145	29	4.2	29	78	10	129	26	29	15	29	1.96
31978030--31978141	58	1.9	57	89	1	170	25	30	16	28	1.96
31978356--31978398	16	2.7	16	88	0	59	9	20	18	51	1.74
31982527--31982645	29	4.2	29	73	6	91	27	26	12	32	1.93
31982533--31982641	58	1.9	57	80	1	128	26	28	12	32	1.93
31998563--31998805	24	10.1	24	95	0	414	36	25	17	19	1.94
32004275--32004313	20	2.0	20	89	0	60	25	15	28	30	1.96
32004238--32004353	60	1.9	59	85	1	160	32	19	21	25	1.97
32008558--32008642	40	2.2	40	84	2	109	28	31	22	17	1.97
32008713--32008821	47	2.3	46	87	7	150	27	29	10	33	1.89
32011370--32011410	20	2.0	20	85	9	55	46	19	4	29	1.71
32024404--32024579	46	3.8	46	81	10	232	20	21	29	28	1.98
32024400--32024571	93	1.8	93	96	0	317	20	22	30	27	1.98
32027534--32027612	15	5.4	15	77	10	83	10	17	13	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32027525--32027611	29	3.0	29	81	8	95	10	17	16	56	1.67
32029997--32030172	46	3.8	46	81	10	232	20	21	29	28	1.98
32029993--32030164	93	1.8	93	96	0	317	20	22	30	27	1.98
32038253--32038285	17	1.9	17	100	0	66	24	18	21	36	1.95
32039576--32039690	29	4.0	29	82	6	128	28	28	14	27	1.95
32039567--32039677	58	1.9	58	85	1	152	27	29	15	27	1.96
32044108--32044221	29	4.0	29	79	6	108	30	28	13	28	1.94
32044106--32044205	29	3.5	29	81	1	121	29	28	15	28	1.96
32049622--32049910	41	7.1	41	77	4	194	38	19	19	22	1.93
32049951--32050026	22	3.5	22	73	10	66	51	25	0	23	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318