genome.fa.s2.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  143  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43732191--43732247	9	5.9	9	73	15	51	35	21	8	35	1.84
43732187--43732249	20	3.2	20	95	0	117	31	19	12	36	1.89
43732282--43732329	25	1.9	25	86	0	69	25	16	25	33	1.96
43733557--43734127	27	21.6	27	82	7	618	40	9	22	27	1.85
43733556--43734127	53	10.8	54	81	6	593	40	9	22	27	1.85
43733557--43734127	80	7.2	80	79	9	546	40	9	22	27	1.85
43737232--43737356	24	5.2	24	89	3	173	25	20	22	32	1.98
43737234--43737356	47	2.6	48	88	3	187	26	19	22	31	1.98
43737410--43737491	20	4.2	20	93	3	148	32	18	12	36	1.88
43737410--43737480	11	7.1	11	67	20	57	32	18	12	36	1.88
43737410--43737491	39	2.1	40	95	2	148	32	18	12	36	1.88
43737528--43737575	25	1.9	25	86	0	69	25	16	25	33	1.96
43738807--43739388	27	21.6	27	83	3	645	40	8	21	28	1.83
43742475--43742577	29	3.6	29	90	2	145	27	15	31	26	1.96
43745607--43745641	11	3.1	11	91	4	52	57	25	0	17	1.40
43745808--43745921	40	2.8	40	91	1	174	50	13	10	25	1.73
43749959--43749999	18	2.3	19	87	8	59	39	0	0	60	0.96
43762768--43762870	29	3.6	29	81	2	118	21	16	33	29	1.95
43770749--43770851	29	3.6	29	81	2	118	21	16	33	29	1.95
43778639--43778871	78	3.1	76	84	7	303	53	9	7	29	1.61
43781171--43781408	104	2.3	105	81	13	278	54	15	0	28	1.48
43781464--43781693	72	3.2	71	92	3	372	57	14	0	27	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43781503--43781621	41	3.1	41	63	22	114	55	15	0	28	1.46
43781514--43781630	31	3.2	39	63	22	106	56	17	0	25	1.46
43781459--43781732	144	1.9	143	82	6	329	55	14	1	28	1.47
43781702--43781825	60	2.1	60	96	0	230	54	11	0	34	1.37
43781701--43781792	27	3.2	27	66	16	76	53	15	0	31	1.42
43781812--43781853	23	1.9	21	90	9	66	71	2	0	26	0.98
43781992--43782039	12	3.8	12	81	13	53	2	18	0	79	0.84
43782159--43782197	19	2.0	20	90	5	62	23	17	12	46	1.83
43782227--43782265	21	1.9	21	89	5	62	56	0	0	43	0.99
43782211--43782260	25	2.0	25	85	11	68	60	0	0	40	0.97
43782226--43782277	21	2.5	20	78	9	59	63	0	0	36	0.95
43783404--43783588	6	30.0	6	69	17	103	50	12	17	19	1.78
43783425--43783588	31	5.3	31	72	16	133	50	12	17	19	1.78
43783470--43783537	25	2.7	25	83	0	100	48	11	17	22	1.79
43783404--43783484	43	1.9	42	85	7	110	53	13	16	17	1.74
43783425--43783512	37	2.4	37	82	0	113	50	12	18	19	1.78
43783538--43783586	25	2.0	25	91	0	80	48	14	16	20	1.80
43783430--43783588	62	2.6	62	92	0	255	49	13	17	19	1.79
43783765--43783802	2	19.0	2	100	0	76	50	0	0	50	1.00
43784155--43784451	27	11.0	27	89	0	423	24	20	20	34	1.96
43784463--43784631	81	2.1	81	87	2	241	31	10	20	37	1.86
43784480--43784621	27	5.3	27	88	0	203	31	9	19	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43784612--43784870	54	4.8	54	88	3	351	41	6	20	31	1.78
43784645--43784870	27	8.4	27	90	1	346	41	6	21	31	1.78
43784885--43785025	27	5.3	27	80	9	155	31	9	17	41	1.82
43784885--43785025	54	2.7	53	80	10	180	31	9	17	41	1.82
43785196--43785230	17	2.0	18	94	5	63	17	34	28	20	1.95
43791737--43791768	17	1.9	16	93	6	55	34	12	21	31	1.91
43792981--43793039	10	5.8	10	78	4	64	18	27	15	38	1.91
43793185--43793222	20	1.9	21	84	10	53	34	0	7	57	1.28
43794280--43794463	80	2.3	81	84	5	232	26	26	21	26	1.99
43794261--43794459	40	5.0	40	82	6	208	26	25	20	27	1.99
43802415--43802639	40	5.7	40	86	5	260	27	28	20	24	1.99
43802415--43802637	79	2.8	79	82	5	243	26	28	20	24	1.99
43802417--43802639	119	1.9	120	84	6	301	26	27	21	24	1.99
43805950--43806045	48	2.0	48	100	0	192	25	18	22	33	1.97
43810193--43810376	79	2.3	80	80	10	207	23	27	23	25	2.00
43810186--43810377	40	4.8	39	73	8	145	23	28	23	25	2.00
43817704--43817866	39	4.2	39	91	0	263	23	33	20	22	1.97
43825108--43825270	39	4.2	39	91	0	263	23	33	20	22	1.97
43827907--43828094	40	4.7	40	92	3	308	24	22	27	25	2.00
43827907--43828117	80	2.7	79	86	7	295	25	22	27	24	2.00
43835980--43836089	41	2.7	40	74	20	120	25	21	29	23	1.99
43835980--43836122	41	3.6	40	72	20	111	27	21	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43836035--43836122	39	2.2	41	80	8	101	27	22	26	23	2.00
43838146--43838235	39	2.3	39	76	5	101	24	26	23	25	2.00
43839694--43839838	40	3.7	40	83	0	166	24	27	21	26	1.99
43839726--43839874	40	3.8	40	81	8	155	23	25	22	28	1.99
43845312--43845412	28	3.6	28	83	1	112	23	31	15	28	1.96
43848244--43848401	43	3.7	43	74	10	153	31	27	18	23	1.97
43848275--43848355	42	1.9	43	85	7	112	33	25	18	22	1.97
43851236--43851282	20	2.3	20	74	0	58	21	19	19	40	1.92
43860043--43860165	24	5.1	24	98	0	237	17	16	28	37	1.92
43860043--43860186	72	2.0	72	90	2	227	20	16	27	36	1.94
43863796--43863991	46	4.2	45	74	14	139	28	18	29	23	1.98
43867076--43867255	64	2.8	64	84	3	200	24	29	14	31	1.94
43870429--43870464	18	2.0	18	100	0	72	22	11	16	50	1.77
43873731--43873897	40	4.2	40	82	2	185	25	27	21	25	1.99
43873731--43873897	80	2.1	79	83	7	205	25	27	21	25	1.99
43874723--43874768	17	2.5	19	74	22	53	34	23	17	23	1.96
43884189--43884372	40	4.6	40	81	2	172	28	22	26	22	1.99
43884229--43884417	80	2.4	80	77	5	184	24	22	29	23	1.99
43892018--43892156	40	3.5	38	78	7	118	27	21	26	24	1.99
43892059--43892161	39	2.6	40	82	3	127	26	23	27	23	2.00
43894238--43894276	18	2.2	18	86	9	53	66	0	7	25	1.18
43898632--43898719	27	3.3	27	78	10	74	39	23	7	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43898656--43898719	27	2.4	26	84	7	83	40	23	6	29	1.79
43898700--43899025	27	12.1	27	85	2	379	28	22	8	40	1.82
43901486--43901551	26	2.5	27	82	2	80	42	24	7	25	1.81
43901553--43901905	27	13.1	27	86	3	442	28	21	9	40	1.84
43902217--43902276	27	2.3	27	85	2	77	21	23	20	35	1.96
43902423--43902485	6	10.5	6	83	6	83	17	15	17	49	1.80
43904336--43904443	43	2.5	43	83	7	123	29	24	21	25	1.99
43910711--43910749	20	2.0	20	84	0	51	53	15	15	15	1.73
43916824--43916884	19	3.4	19	68	13	65	42	18	22	16	1.89
43916818--43916892	35	2.1	35	97	0	141	45	21	20	13	1.84
43920508--43920545	2	19.0	2	100	0	76	50	0	0	50	1.00
43923548--43923731	40	4.6	39	79	9	185	23	21	28	26	1.99
43930771--43930951	40	4.6	40	79	8	174	24	21	27	26	1.99
43930768--43930984	79	2.7	78	74	14	194	25	22	27	25	2.00
43941632--43941757	40	3.2	39	80	6	139	21	25	24	28	1.99
43957684--43957782	28	3.5	29	83	6	114	30	27	15	27	1.96
43957897--43957925	2	14.5	2	100	0	58	48	0	0	51	1.00
43962082--43962130	17	2.8	18	74	22	50	24	18	22	34	1.96
43962953--43963119	40	4.2	40	79	6	169	25	21	27	25	1.99
43970087--43970135	17	2.8	18	74	22	50	24	18	22	34	1.96
43970957--43971122	40	4.2	39	77	9	158	25	21	27	24	1.99
43976358--43976406	17	2.8	18	74	22	50	24	18	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43977228--43977394	40	4.2	40	79	6	169	25	21	27	25	1.99
43983176--43983274	28	3.5	29	83	6	114	30	27	15	27	1.96
43983389--43983419	2	15.5	2	93	0	53	45	0	3	51	1.17
43992478--43992570	28	3.3	28	76	7	89	27	15	32	24	1.95
43996356--43996714	93	3.9	92	75	11	315	27	19	29	23	1.98
44001272--44001440	46	3.6	46	78	14	186	20	27	21	30	1.98
44001272--44001443	94	1.8	92	85	9	242	20	27	21	29	1.98
44001128--44001440	140	2.2	142	81	8	343	22	28	20	28	1.98
44006348--44006391	18	2.4	18	92	7	72	13	22	40	22	1.89
44013738--44013855	41	3.1	41	60	28	98	32	17	28	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318